CF831984
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF831984 vs. ExPASy Swiss-Prot
Match: RS4_SULIA (30S ribosomal protein S4P OS=Sulfolobus islandicus (strain M.16.27) GN=rps4p PE=3 SV=1) HSP 1 Score: 106.686 bits (265), Expect = 1.449e-22 Identity = 59/160 (36.88%), Postives = 91/160 (56.88%), Query Frame = -1 Query: 278 KTFKKPRRPYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMVKSIPHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPFGGGRP 757 K ++ P P+ KER+ E L+G+YGLR KRE+W Q + + R+ AR LL L R + L+ ++ + G L+ +D +L+LT ++ LERRLQT+V+K G+ + AR LI HI V + V P ++V VD + I++ +TS F P Sbjct: 9 KKWESPGHPWIKERIGYEQELLGKYGLRNKREIWIAQSIIRKFRHQARSLLALPPAE--RAVREKQLVGKLLKMGLLKRETATVDDILSLTEQDLLERRLQTIVYKKGLANTTYQARQLIIHGHIAVNGKRVTSPGYIVNVDEENLIDYYVTSSFKSRPP 166
BLAST of CF831984 vs. ExPASy Swiss-Prot
Match: RS4_METS5 (30S ribosomal protein S4P OS=Metallosphaera sedula (strain ATCC 51363 / DSM 5348) GN=rps4p PE=3 SV=1) HSP 1 Score: 106.686 bits (265), Expect = 1.449e-22 Identity = 56/160 (35.00%), Postives = 94/160 (58.75%), Query Frame = -1 Query: 278 KTFKKPRRPYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMVKSIPHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPFGGGRP 757 + ++ P P+ + L +E +++G+YGLR K+E+W + ++ R+ AR LL L R + LL ++++ G L+ Q+ +D +L L E+ LERRLQT+V + G+ ++I AR LI HI VG + + P ++V+ D + I+F TSPF P Sbjct: 9 RKWEGPGMPWLSQALKSEQKIMGDYGLRNKKEIWLARTIVTGYRHMARSLLALPPAE--RAVREKQLLGKLYKLGLLKSEQSTIDDILGLEEESLLERRLQTIVHRKGLARTIYQARQLIVHGHIAVGGRKITSPGYIVKRDEEDSIDFYPTSPFKNNPP 166
BLAST of CF831984 vs. ExPASy Swiss-Prot
Match: RS4_PYRKO (30S ribosomal protein S4P OS=Pyrococcus kodakaraensis GN=rps4p PE=3 SV=1) HSP 1 Score: 106.301 bits (264), Expect = 1.893e-22 Identity = 65/164 (39.63%), Postives = 94/164 (57.32%), Query Frame = -1 Query: 269 KTFKKPRRPYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMVKSIPHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPFG-GGRPGRV 757 K ++ P P+ KERLD E L Y L+ K+ELWR + L R AR LL K E + LL+R++R G L + LD VL+LTVE+ LERRLQT+V++ G+ +++ AR LI HI V Q++ P ++V + + I ++ SPF G P R+ Sbjct: 9 KKYETPSHPWIKERLDRERVLKRNYALKNKKELWRHETQLKEFRRRARRLLAARGKQAE--IERQQLLQRLYRLGLLP-ADAVLDDVLSLTVEDVLERRLQTIVYRKGLARTMKQARQLIVHGHIEVNGQVIRSPGYLVLREEEDTITYAKGSPFAKEGHPERM 169
BLAST of CF831984 vs. ExPASy Swiss-Prot
Match: RS4_METBF (30S ribosomal protein S4P OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=rps4p PE=3 SV=1) HSP 1 Score: 105.916 bits (263), Expect = 2.472e-22 Identity = 58/160 (36.25%), Postives = 91/160 (56.88%), Query Frame = -1 Query: 296 KTFKKPRRPYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEG------EALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMVKSIPHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSP 757 K+F+ PR P+++ R+ +E++LV YGLR KRE+W+ L R+ AR LL + R EG E +L ++ RYG ++ S +D +L+L EN LERRLQT V + G+ +++ AR I HI + + +P +V + + HI + TSP Sbjct: 9 KSFETPRHPWQEARMASEVQLVKAYGLRNKREVWKAASTLRMYRSEARRLLASAANSQERGLEGHQKTQSEEILAKLIRYGIIK-SDADIDDILSLKTENILERRLQTQVLRLGLARTVVQARQFITHGHIAINGRKATVPGMLVSKEDEMHIGYYATSP 167
BLAST of CF831984 vs. ExPASy Swiss-Prot
Match: RS9_TOBAC (40S ribosomal protein S9 (Fragment) OS=Nicotiana tabacum GN=RPS9 PE=3 SV=1) HSP 1 Score: 104.76 bits (260), Expect = 5.507e-22 Identity = 48/57 (84.21%), Postives = 55/57 (96.49%), Query Frame = -1 Query: 257 KSIPHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPFGGGRPGRVKRRN 427 KS+ HARVLIRQRHIRVGRQ+VN+PSF+VR+DSQKHI+FSL SPFGGGRPGRVKR+N Sbjct: 2 KSVHHARVLIRQRHIRVGRQVVNVPSFMVRLDSQKHIDFSLISPFGGGRPGRVKRKN 58
BLAST of CF831984 vs. ExPASy Swiss-Prot
Match: RS4_KORCO (30S ribosomal protein S4P OS=Korarchaeum cryptofilum (strain OPF8) GN=rps4p PE=3 SV=1) HSP 1 Score: 104.375 bits (259), Expect = 7.192e-22 Identity = 56/148 (37.84%), Postives = 89/148 (60.14%), Query Frame = -1 Query: 314 KTFKKPRRPYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMVKSIPHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIE 757 K +++P +P+++ L+ RL G YGLR KRELWR+ + + R AR LL + ++ E +++++ G L + LD +L L+VE FLERRLQT+V++ G KS AR LI HIRV + + PS++V+++ + IE Sbjct: 9 KKYERPYKPWDRRVLEETNRLAGYYGLRNKRELWRMSFLAKKYRRIARQLLAAPKSESWKV---EPIIKKLQALGILSKDAT-LDDLLDLSVEQFLERRLQTIVWRKGFAKSPYMARQLITHGHIRVNGRRIRQPSYLVKIEEEDKIE 152
BLAST of CF831984 vs. ExPASy Swiss-Prot
Match: RS4_PYRIL (30S ribosomal protein S4P OS=Pyrobaculum islandicum (strain DSM 4184 / JCM 9189) GN=rps4p PE=3 SV=1) HSP 1 Score: 100.908 bits (250), Expect = 7.952e-21 Identity = 58/145 (40.00%), Postives = 87/145 (60.00%), Query Frame = -1 Query: 317 KPRRPYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTL--DEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMVKSIPHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHI 745 KP++ + K+ L EL+LVGEYGLR K+ELW + L I AR LL++ +E+ P + ++++ GF+E+ LD +L+L V LERRLQT+V++ G+ KSI HAR L+ H+ V + V P F+V D + I Sbjct: 15 KPKKIWNKQLLLEELQLVGEYGLRNKKELWLARAHLKWIVRRARSLLSMTPEERAPLEL----PFKEKLYKMGFIEDPNVPLDRILSLDVRAILERRLQTIVYRKGLAKSIYHARQLVVHGHVAVAGRRVTSPGFLVPRDLEDKI 155
BLAST of CF831984 vs. ExPASy Swiss-Prot
Match: RS4_PYRAE (30S ribosomal protein S4P OS=Pyrobaculum aerophilum GN=rps4p PE=3 SV=1) HSP 1 Score: 100.908 bits (250), Expect = 7.952e-21 Identity = 57/137 (41.61%), Postives = 84/137 (61.31%), Query Frame = -1 Query: 341 KPRRPYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLL--TLDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMVKSIPHARVLIRQRHIRVGRQLVNIPSFVV 745 KP++ + K+ L EL+L+GEYGLR K+ELW + L I AR LL T +E+ P + ++++ GF+E+ +LD +L+L V LERRLQT+V++ G+ KSI HAR LI H+ V + V P F+V Sbjct: 15 KPKKIWNKQLLLEELQLMGEYGLRNKKELWLARARLKWITRRARSLLSMTAEERAPLEM----PFKEKLYKMGFIEDPNVQLDRILSLDVRAILERRLQTIVYRMGLAKSIHHARQLIVHGHVAVAGRRVTSPGFLV 147
BLAST of CF831984 vs. ExPASy Swiss-Prot
Match: RS4_PYRCJ (30S ribosomal protein S4P OS=Pyrobaculum calidifontis (strain JCM 11548 / VA1) GN=rps4p PE=3 SV=1) HSP 1 Score: 100.523 bits (249), Expect = 1.039e-20 Identity = 58/137 (42.34%), Postives = 83/137 (60.58%), Query Frame = -1 Query: 341 KPRRPYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLL--TLDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMVKSIPHARVLIRQRHIRVGRQLVNIPSFVV 745 KP++ + K+ L EL+L+GEYGLR K+ELW + L I AR LL T +E+ P + ++++ GF+E+ LD +L+L V LERRLQTLVF+ G+ KSI HAR L+ H+ V + V P F+V Sbjct: 15 KPKKIWNKQLLLEELQLMGEYGLRNKKELWLARARLKWIVRRARALLSMTAEERAPLEV----PFKEKLYKMGFIEDPNVPLDRILSLDVRAILERRLQTLVFRMGLAKSIHHARQLVVHGHVLVAGRRVTSPGFLV 147
BLAST of CF831984 vs. ExPASy Swiss-Prot
Match: RS4_THENV (30S ribosomal protein S4P OS=Thermoproteus neutrophilus (strain DSM 2338 / JCM 9278 / V24Sta) GN=rps4p PE=3 SV=1) HSP 1 Score: 100.138 bits (248), Expect = 1.356e-20 Identity = 59/137 (43.07%), Postives = 84/137 (61.31%), Query Frame = -1 Query: 341 KPRRPYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLL--TLDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMVKSIPHARVLIRQRHIRVGRQLVNIPSFVV 745 KP++ + K+ L EL+L+GEYGLR K+ELW + L I AR LL T +E+ P + ++++ GF+E+ LD VL+L V LERRLQT+V++ G+ KSI HAR LI HI V + V+ P F+V Sbjct: 15 KPKKIWNKQLLLEELQLMGEYGLRNKKELWLARAHLKWIVRRARSLLSMTAEERAPLEL----PFKEKLYKMGFIEDPNVPLDRVLSLDVRAILERRLQTIVYRMGLAKSIYHARQLIVHGHIAVAGRRVSSPGFLV 147 The following BLAST results are available for this feature:
BLAST of CF831984 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 84
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Sequences
The
following sequences are available for this feature:
EST sequence >CF831984 ID=CF831984; Name=CF831984; organism=Citrus sinensis; type=EST; length=760bpback to top |