CF831985

Overview
NameCF831985
Unique NameCF831985
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length613
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF831985 vs. ExPASy Swiss-Prot
Match: RS4_SULAC (30S ribosomal protein S4P OS=Sulfolobus acidocaldarius GN=rps4p PE=3 SV=3)

HSP 1 Score: 115.931 bits (289), Expect = 1.594e-25
Identity = 66/168 (39.29%), Postives = 99/168 (58.93%), Query Frame = 1
Query:   79 RNYGKTFKKPRRPYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLD--EKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPFGGGRPGR 576
            R   K +  P  P+ K  L  E  L+G+YGLR K+E+W  Q  +   R+ AR LL L   E+N R     + L+++++R G LE+  + LD +L+LT EN+LERRLQT+V+K G+A++I+ AR LI   HI +  + V  P +VV    +  I++  TSPF    P +
Sbjct:    5 RKSKKKWMGPSHPWIKINLGKEQILIGKYGLRNKKEIWIAQTMIRNFRHQARSLLALPPAERNIRE----KQLIQKLYRMGILEKDNSTLDDILSLTEENYLERRLQTIVYKKGLARTIYQARQLITHGHIAISGRKVTSPGYVVLRGEEDLIDYYPTSPFKQNPPSQ 168          
BLAST of CF831985 vs. ExPASy Swiss-Prot
Match: RS4_THEPD (30S ribosomal protein S4P OS=Thermofilum pendens (strain Hrk 5) GN=rps4p PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 2.082e-25
Identity = 67/154 (43.51%), Postives = 91/154 (59.09%), Query Frame = 1
Query:   91 KTFKKPRRPYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSP 552
            K ++ P  P+ KE L  E++LVGEYGLR KRELW  +  L  IR  AR LL L  +   RI   + L+ R+++ G L      LD VL+LTV + LERRLQT+V++ G+A +I HAR LI   HI V  + V  P ++V  D +  I +   SP
Sbjct:    9 KKWQGPSHPWRKETLLEEMQLVGEYGLRNKRELWIAKSLLREIRAKARKLLALPAEE--RIKLEKPLVSRLYKMGLLPSEDASLDDVLSLTVRDVLERRLQTIVYRKGLATTIRHARQLITHGHIAVNSRRVRSPGYLVSRDEENFISYYEGSP 160          
BLAST of CF831985 vs. ExPASy Swiss-Prot
Match: RS4_PYRHO (30S ribosomal protein S4P OS=Pyrococcus horikoshii GN=rps4p PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 2.719e-25
Identity = 71/171 (41.52%), Postives = 99/171 (57.89%), Query Frame = 1
Query:   91 KTFKKPRRPYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPFGGGRPGRVKRRNIKAA 603
            K ++ P  P+ KERLD E  L+ +Y L+ K+ELW+ +  L   R  AR LL    K      E E LL R+ R G L E    LD VL+LTVE+ LERRLQT+V+K G+A+++  AR LI   HI V  Q++  PS++V  + +  I ++ TSPF    P   +R  I+ A
Sbjct:    9 KKYETPPHPWIKERLDRERVLMDKYELKNKKELWKHETQLKNFRRRARRLLAARGKQAE--IEREQLLSRLKRLGLLPEDA-VLDDVLSLTVEDILERRLQTIVYKKGLARTMRQARQLIVHGHIEVNGQIIRSPSYLVLKEEEDKITYARTSPF--ANPQHPERMMIEKA 174          
BLAST of CF831985 vs. ExPASy Swiss-Prot
Match: RS4_THESM (30S ribosomal protein S4P OS=Thermococcus sibiricus (strain MM 739 / DSM 12597) GN=rps4p PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 3.552e-25
Identity = 67/159 (42.14%), Postives = 93/159 (58.49%), Query Frame = 1
Query:   91 KTFKKPRRPYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPFGGGR 567
            K ++ P  P+ KERLD E  LV +Y L+ K+ELW+ +  L   R  AR LL    K      E   LL+R+ R G L E  + LD VL+LT+++ LERRLQTLVFK G+A++I  AR LI   HI V  Q++  PS++V  + +  I +   SPF   +
Sbjct:    9 KRYETPSHPWIKERLDRERVLVQKYALKNKKELWKHETQLKNFRRRARRLLAARGKQAE--IERAQLLQRLARLGILPEGAH-LDDVLSLTIDDILERRLQTLVFKKGLARTIKQARQLIVHGHIEVNGQIIRSPSYLVLKEEEDGITYGRASPFANSQ 164          
BLAST of CF831985 vs. ExPASy Swiss-Prot
Match: RS4_THEGJ (30S ribosomal protein S4P OS=Thermococcus gammatolerans (strain DSM 15229 / JCM 11827 / EJ3) GN=rps4p PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 4.639e-25
Identity = 67/155 (43.23%), Postives = 92/155 (59.35%), Query Frame = 1
Query:   91 KTFKKPRRPYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPF 555
            K ++ P  P+ KERLD E  L  +Y L+ K+ELWR +  L   R  AR LL    K      E + LL+R+HR G L  +   LD VL+LTVE+ LERRLQTLV+K G+A++I  AR LI   HI V  Q++  P ++V  + +  I ++  SPF
Sbjct:    9 KKYETPSHPWIKERLDRERVLKRKYALKNKKELWRHETQLKEFRRRARRLLAARGKQAE--IERQQLLQRLHRLGLLP-ADAALDDVLSLTVEDVLERRLQTLVYKKGLARTIRQARQLIVHGHIEVNGQIIRSPGYLVLREEEDTITYAKNSPF 160          
BLAST of CF831985 vs. ExPASy Swiss-Prot
Match: RS4_PYRFU (30S ribosomal protein S4P OS=Pyrococcus furiosus GN=rps4p PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 4.639e-25
Identity = 70/171 (40.94%), Postives = 99/171 (57.89%), Query Frame = 1
Query:   91 KTFKKPRRPYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPFGGGRPGRVKRRNIKAA 603
            K ++ P  P+ KERLD E  L+ +Y L+ K+ELW+ +  L   R  AR LL    K      E E LL R+ R G L E    LD VL+LT+E+ LERRLQT+V+K G+A+++  AR LI   HI V  Q++  PS++V  + +  I ++ TSPF    P   +R  I+ A
Sbjct:    9 KKYETPPHPWIKERLDRERVLMDKYELKNKKELWKHETQLKNFRRRARRLLAARGKQAE--IEREQLLARLKRLGLLPEDA-VLDDVLSLTIEDILERRLQTIVYKKGLARTMRQARQLIVHGHIEVNGQIIRSPSYLVLKEEEDTITYARTSPF--ANPQHPERMMIEKA 174          
BLAST of CF831985 vs. ExPASy Swiss-Prot
Match: RS4_PYRAB (30S ribosomal protein S4P OS=Pyrococcus abyssi GN=rps4p PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 4.639e-25
Identity = 70/171 (40.94%), Postives = 99/171 (57.89%), Query Frame = 1
Query:   91 KTFKKPRRPYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPFGGGRPGRVKRRNIKAA 603
            K ++ P  P+ KERLD E  L+ +Y L+ K+ELW+ +  L   R  AR LL    K      E E LL R+ R G L E    LD VL+LT+E+ LERRLQT+V+K G+A+++  AR LI   HI V  Q++  PS++V  + +  I ++ TSPF    P   +R  I+ A
Sbjct:    9 KKYETPPHPWIKERLDRERVLMDKYELKNKKELWKHETQLKNFRRRARRLLAARGKQAE--IEREQLLARLKRLGLLPEDA-VLDDVLSLTIEDILERRLQTIVYKKGLARTMRQARQLIVHGHIEVNGQIIRSPSYLVLKEEEDTITYARTSPF--ANPQHPERMMIEKA 174          
BLAST of CF831985 vs. ExPASy Swiss-Prot
Match: RS4_THEON (30S ribosomal protein S4P OS=Thermococcus onnurineus (strain NA1) GN=rps4p PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 6.058e-25
Identity = 67/155 (43.23%), Postives = 93/155 (60.00%), Query Frame = 1
Query:   91 KTFKKPRRPYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPF 555
            K ++ P  P+ KERLD E  L+ +Y L+ K+ELWR +  L   R  AR LL    K      E   LL+R++R G L  +   LD VL+LTVE+ L+RRLQT+VFK G+A++I  AR LI   HI V  Q++  P ++V  + +  I +S TSPF
Sbjct:    9 KKYETPSHPWIKERLDRERVLMKKYALKNKKELWRHETQLKEFRRRARRLLAARGKQAE--IERAQLLQRLNRLGLLP-ADAVLDDVLSLTVEDVLDRRLQTIVFKKGLARTIRQARQLIVHGHIEVNGQIIRSPGYLVLKEEEDTITYSKTSPF 160          
BLAST of CF831985 vs. ExPASy Swiss-Prot
Match: RS4_METTP (30S ribosomal protein S4P OS=Methanosaeta thermophila (strain DSM 6194 / PT) GN=rps4p PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 6.058e-25
Identity = 62/164 (37.80%), Postives = 97/164 (59.15%), Query Frame = 1
Query:   91 KTFKKPRRPYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRI-FEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPFG-GGRPGR 576
            KT+ +PR+P+E +R+  E+ L+  YGLR KRELW+ +  L + R   R LL    +   R   E  A++ R+ R+G L++  + LD +L+L + + LERRLQT V++ G+A +I  AR  I   HI+V  Q V +PS++V+   +  I++   SP    G P R
Sbjct:    9 KTYDRPRKPWEADRMANEVELIKTYGLRNKRELWKAESILRKYRRVGRMLLASKARGEARADIEAAAVINRLSRFGILKDGAD-LDAILSLKITDILERRLQTQVYRQGLANTIRQARQFITHGHIQVAGQRVTVPSYLVKRGDEMTIDYYAGSPLAREGHPER 171          
BLAST of CF831985 vs. ExPASy Swiss-Prot
Match: RS4_ARCFU (30S ribosomal protein S4P OS=Archaeoglobus fulgidus GN=rps4p PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.033e-24
Identity = 63/162 (38.89%), Postives = 98/162 (60.49%), Query Frame = 1
Query:   79 RNYGKTFKKPRRPYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTL----DEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSP 552
            + + K +  P  P++K RL+ E++LV +YGLR KRELWR Q  L + R  ARDLL       ++      + + +++++++ G L E+   LD +L L+VE+FLERRLQT+V++ G+A++I  AR  I   HI V  + V  PSF+V  + +  I F   SP
Sbjct:    5 KRHRKKYTTPTHPWDKARLEKEMQLVIKYGLRNKRELWRFQNILRKYRRVARDLLAEIGLPGKEGEIAKAKAQTVIKKLNKMGILPENAT-LDDILNLSVEDFLERRLQTMVYRQGLARTIKQARQFITHGHIAVDGRRVTSPSFIVTKELESKISFYRNSP 165          
The following BLAST results are available for this feature:
BLAST of CF831985 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 84
Match NameE-valueIdentityDescription
RS4_SULAC1.594e-2539.2930S ribosomal protein S4P OS=Sulfolobus acidocalda... [more]
RS4_THEPD2.082e-2543.5130S ribosomal protein S4P OS=Thermofilum pendens (... [more]
RS4_PYRHO2.719e-2541.5230S ribosomal protein S4P OS=Pyrococcus horikoshii... [more]
RS4_THESM3.552e-2542.1430S ribosomal protein S4P OS=Thermococcus sibiricu... [more]
RS4_THEGJ4.639e-2543.2330S ribosomal protein S4P OS=Thermococcus gammatol... [more]
RS4_PYRFU4.639e-2540.9430S ribosomal protein S4P OS=Pyrococcus furiosus G... [more]
RS4_PYRAB4.639e-2540.9430S ribosomal protein S4P OS=Pyrococcus abyssi GN=... [more]
RS4_THEON6.058e-2543.2330S ribosomal protein S4P OS=Thermococcus onnurine... [more]
RS4_METTP6.058e-2537.8030S ribosomal protein S4P OS=Methanosaeta thermoph... [more]
RS4_ARCFU1.033e-2438.8930S ribosomal protein S4P OS=Archaeoglobus fulgidu... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS02_01B24_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01B24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF831985 ID=CF831985; Name=CF831985; organism=Citrus sinensis; type=EST; length=613bp
CTTTTACAAAGCTCTTACAGGGGGAGAGAGTGAGGGTAGCACCAACGGCG
CGCAAAGATGGTGCACGTTTCATTCTACCGCAACTATGGGAAAACCTTCA
AGAAGCCAAGACGTCCCTATGAGAAGGAGCGATTGGATGCTGAGTTGAGA
CTTGTGGGAGAGTATGGGCTTCGCTGCAAGAGGGAACTCTGGAGGGTTCA
ATACGCACTGAGCCGCATCCGAAATGCTGCGAGGGATCTTCTCACTCTCG
ATGAGAAGAACCCACGACGTATTTTTGAGGGTGAGGCCCTTCTCAGGAGG
ATGCACAGGTATGGCTTCTTGGAAGAGAGCCAGAACAAGCTTGATTATGT
GTTGGCCCTCACTGTGGAGAACTTTCTTGAGCGTCGTCTTCAGACCCTTG
TGTTCAAGAGTGGCATGGCTAAGTCAATTCACCATGCTCGAGTGCTCATC
AGGCAGAGGCACATTAGGGTTGGAAGGCAGCTTGTCAACATTCCCTCATT
TGTAGTGAGGGTTGATTCCCAGAAGCACATTGAATTCTCACTCACAAGTC
CATTTGGAGGCGGGCGCCCCGGAAGAGTGAAGAGAAGGAACATTAAGGCT
GCTGCCAAGAAGG
back to top