CF831987

Overview
NameCF831987
Unique NameCF831987
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length878
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CF831987_ssr19 microsatellite CF831987_ssr19:19..30. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig1001 contig Csv1_Contig1001:724..1601. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF831987 vs. ExPASy Swiss-Prot
Match: EF2_CRIGR (Elongation factor 2 OS=Cricetulus griseus GN=EEF2 PE=3 SV=3)

HSP 1 Score: 239.195 bits (609), Expect = 2.349e-62
Identity = 113/170 (66.47%), Postives = 137/170 (80.59%), Query Frame = -2
Query:  368 EGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYMVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFSGTLRAATSGQAFPQCVFDHWDMMSSDPLEPGTQAAQLVADIRKRKGLKEQMTPLSEFEDKL 877
            EGAL EENMRG+ F+V DV LHADAIHR GGQ+IPTARR +YAS LTA+PRL+EP+Y+VEIQ PEQ +GGIY VLN+KRGHVFEE Q  GTP++ +KAYLPV ESFGF+  LR+ T GQAFPQCVFDHW ++  DP +  ++ +Q+VA+ RKRKGLKE +  L  F DKL
Sbjct:  689 EGALCEENMRGVRFDVHDVTLHADAIHRRGGQIIPTARRCLYASVLTAQPRLMEPIYLVEIQCPEQVVGGIYGVLNRKRGHVFEESQVAGTPMFVVKAYLPVNESFGFTADLRSNTGGQAFPQCVFDHWQILPGDPFDNSSRGSQVVAETRKRKGLKEGIPALDNFLDKL 858          
BLAST of CF831987 vs. ExPASy Swiss-Prot
Match: EF2_CHICK (Elongation factor 2 OS=Gallus gallus GN=EEF2 PE=1 SV=3)

HSP 1 Score: 238.81 bits (608), Expect = 3.068e-62
Identity = 112/170 (65.88%), Postives = 136/170 (80.00%), Query Frame = -2
Query:  368 EGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYMVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFSGTLRAATSGQAFPQCVFDHWDMMSSDPLEPGTQAAQLVADIRKRKGLKEQMTPLSEFEDKL 877
            EG L EENMRG+ F+V DV LHADAIHRGGGQ+IPTARR +YA  LTA+PRL+EP+Y+VEIQ PEQ +GGIY VLN+KRGHVFEE Q  GTP++ +KAYLPV ESFGF+  LR+ T GQAFPQCVFDHW ++  DP +  ++ +Q+VA+ RKRKGLKE +  L  F DKL
Sbjct:  689 EGVLCEENMRGVRFDVHDVTLHADAIHRGGGQIIPTARRCLYACVLTAQPRLMEPIYLVEIQCPEQVVGGIYGVLNRKRGHVFEESQVAGTPMFVVKAYLPVNESFGFTADLRSNTGGQAFPQCVFDHWQILPGDPFDSASRPSQVVAETRKRKGLKEGIPALDNFLDKL 858          
BLAST of CF831987 vs. ExPASy Swiss-Prot
Match: EF2_SCHPO (Elongation factor 2 OS=Schizosaccharomyces pombe GN=eft1 PE=1 SV=2)

HSP 1 Score: 237.269 bits (604), Expect = 8.926e-62
Identity = 114/170 (67.06%), Postives = 135/170 (79.41%), Query Frame = -2
Query:  368 EGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYMVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFSGTLRAATSGQAFPQCVFDHWDMMSSDPLEPGTQAAQLVADIRKRKGLKEQMTPLSEFEDKL 877
            EG + EEN+R   F + DVVLHADAIHRGGGQ+IPTARRV+YAS L A P + EPV++VEIQ  E A+GGIYSVLN+KRGHVF E QR GTPLYNIKAYLPV ESFGF+G LR AT+GQAFPQ VFDHW  MS DPL+P ++  Q+V + RKRKGLKE +   +E+ D+L
Sbjct:  673 EGPMFEENLRSCRFNILDVVLHADAIHRGGGQIIPTARRVVYASTLLASPIIQEPVFLVEIQVSENAMGGIYSVLNKKRGHVFSEEQRVGTPLYNIKAYLPVNESFGFTGELRQATAGQAFPQLVFDHWSPMSGDPLDPTSKPGQIVCEARKRKGLKENVPDYTEYYDRL 842          
BLAST of CF831987 vs. ExPASy Swiss-Prot
Match: EF2_DROME (Elongation factor 2 OS=Drosophila melanogaster GN=Ef2b PE=1 SV=4)

HSP 1 Score: 234.187 bits (596), Expect = 7.556e-61
Identity = 109/170 (64.12%), Postives = 135/170 (79.41%), Query Frame = -2
Query:  368 EGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYMVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFSGTLRAATSGQAFPQCVFDHWDMMSSDPLEPGTQAAQLVADIRKRKGLKEQMTPLSEFEDKL 877
            EG LA+EN+RG+ F + DV LHADAIHRGGGQ+IPT RR +YA+ +TAKPRL+EPVY+ EIQ PE A+GGIY VLN++RGHVFEE Q  GTP++ +KAYLPV ESFGF+  LR+ T GQAFPQCVFDHW ++  DP EP ++   +V D RKRKGLKE +  LS++ DKL
Sbjct:  675 EGILADENLRGVRFNIYDVTLHADAIHRGGGQIIPTTRRCLYAAAITAKPRLMEPVYLCEIQCPEVAVGGIYGVLNRRRGHVFEENQVVGTPMFVVKAYLPVNESFGFTADLRSNTGGQAFPQCVFDHWQVLPGDPSEPSSKPYAIVQDTRKRKGLKEGLPDLSQYLDKL 844          
BLAST of CF831987 vs. ExPASy Swiss-Prot
Match: EF2_BOMMO (Translation elongation factor 2 OS=Bombyx mori GN=tef2 PE=1 SV=1)

HSP 1 Score: 229.18 bits (583), Expect = 2.431e-59
Identity = 106/170 (62.35%), Postives = 133/170 (78.24%), Query Frame = -2
Query:  368 EGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYMVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFSGTLRAATSGQAFPQCVFDHWDMMSSDPLEPGTQAAQLVADIRKRKGLKEQMTPLSEFEDKL 877
            EG +AEEN+RG+ F + DV LH DAIHRGGGQ+IPT RR +YA  LTA+PRL+EPVY+ EIQ PE A+GGIY VLN++RGHVFEE Q  GTP++ +KAYLPV ESFGF+  LR+ T GQAFPQCVFDHW ++  DP EP ++   +V + RKRKGLKE +  L+++ DKL
Sbjct:  675 EGVMAEENLRGVRFNIYDVTLHTDAIHRGGGQIIPTTRRCLYACLLTAQPRLMEPVYLCEIQCPEVAVGGIYGVLNRRRGHVFEESQVAGTPMFIVKAYLPVNESFGFTADLRSNTGGQAFPQCVFDHWQVLPGDPCEPQSKPYNVVQETRKRKGLKEGLPDLTQYLDKL 844          
BLAST of CF831987 vs. ExPASy Swiss-Prot
Match: EF2_NEUCR (Elongation factor 2 OS=Neurospora crassa GN=cot-3 PE=3 SV=3)

HSP 1 Score: 228.024 bits (580), Expect = 5.415e-59
Identity = 109/171 (63.74%), Postives = 135/171 (78.95%), Query Frame = -2
Query:  368 EGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYMVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFSGTLRAATSGQAFPQCVFDHWDMM-SSDPLEPGTQAAQLVADIRKRKGLKEQMTPLSEFEDKL 877
            EG + EE MR I F + DV LHADAIHRGGGQ+IPTARRV+YA+ L A+P LLEPV++VEIQ PEQA+GG+Y VL ++RGHVF E QRPGTPL+ IKAYLPV+ESFGF+G LRAATSGQAFPQ VFDHW+ +    PL+  ++  Q+V ++RKRKGLK ++     + DKL
Sbjct:  674 EGPIGEEPMRSIRFNILDVTLHADAIHRGGGQIIPTARRVLYAATLLAEPSLLEPVFLVEIQVPEQAMGGVYGVLTRRRGHVFGEEQRPGTPLFTIKAYLPVMESFGFNGDLRAATSGQAFPQSVFDHWERLPGGSPLDSTSKVGQIVQEMRKRKGLKVEVPGYENYYDKL 844          
BLAST of CF831987 vs. ExPASy Swiss-Prot
Match: EF2_CRYPV (Elongation factor 2 OS=Cryptosporidium parvum PE=3 SV=1)

HSP 1 Score: 223.402 bits (568), Expect = 1.334e-57
Identity = 104/170 (61.18%), Postives = 133/170 (78.24%), Query Frame = -2
Query:  368 EGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYMVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFSGTLRAATSGQAFPQCVFDHWDMMSSDPLEPGTQAAQLVADIRKRKGLKEQMTPLSEFEDKL 877
            EG L EE+MRGI F + DV LHADAIHRG GQ+ PT RRV+YA+ LTA PRLLEP+++VEI AP++ +GGIY+ LNQ+RGHVF E  + GTP   IKAYLPV +SF F+  LRAATSG+AFPQCVFDHW++++ DPLE G++  +LV  IR+RK +KE++  L  + DKL
Sbjct:  663 EGILCEEDMRGIRFNLLDVTLHADAIHRGAGQITPTCRRVMYAAALTASPRLLEPMFLVEISAPQEVVGGIYATLNQRRGHVFHEEPKSGTPQVEIKAYLPVADSFKFTTVLRAATSGKAFPQCVFDHWELINGDPLEKGSKTEELVKAIRRRKNIKEEIPALDNYLDKL 832          
BLAST of CF831987 vs. ExPASy Swiss-Prot
Match: EF2_KLULA (Elongation factor 2 OS=Kluyveromyces lactis GN=EFT1 PE=3 SV=1)

HSP 1 Score: 220.32 bits (560), Expect = 1.129e-56
Identity = 103/170 (60.59%), Postives = 129/170 (75.88%), Query Frame = -2
Query:  368 EGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYMVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFSGTLRAATSGQAFPQCVFDHWDMMSSDPLEPGTQAAQLVADIRKRKGLKEQMTPLSEFEDKL 877
            EG +  E MR +   + DV LHADAIHRGGGQ+IPT RR  YA  L A+P++ EPV++VEIQ PEQA+GGIYSVLN+KRG V  E QRPGTPL+ +KAYLP+ ESFGF+G LR AT GQAFPQ VFDHW  + +DPL+P T+A ++V   RKR+G+KE++    E+ DKL
Sbjct:  673 EGPIFGEQMRSVRVNILDVTLHADAIHRGGGQIIPTMRRATYAGFLLAEPKIQEPVFLVEIQCPEQAIGGIYSVLNKKRGQVVSEEQRPGTPLFTVKAYLPINESFGFTGELRQATGGQAFPQMVFDHWATLGTDPLDPSTKAGEIVLAARKRQGMKEEVPGWQEYYDKL 842          
BLAST of CF831987 vs. ExPASy Swiss-Prot
Match: EF2_SACKL (Elongation factor 2 OS=Saccharomyces kluyveri GN=EFT2 PE=3 SV=1)

HSP 1 Score: 219.164 bits (557), Expect = 2.515e-56
Identity = 104/170 (61.18%), Postives = 128/170 (75.29%), Query Frame = -2
Query:  368 EGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYMVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFSGTLRAATSGQAFPQCVFDHWDMMSSDPLEPGTQAAQLVADIRKRKGLKEQMTPLSEFEDKL 877
            EG +  E MR +   + DV LHADAIHRGGGQ+IPT RR  YA  L A+P++ EPV++VEIQ PEQA+GGIYSVLN+KRG V  E QRPGTPL+ +KAYLPV ESFGF+G LR AT GQAFPQ VFDHW  + +DPL+P T+A ++V   RKR G+KE++    E+ DKL
Sbjct:  673 EGPIFGEQMRSVRVNILDVTLHADAIHRGGGQIIPTMRRATYAGFLLAEPKIQEPVFLVEIQCPEQAVGGIYSVLNRKRGQVVSEEQRPGTPLFTVKAYLPVNESFGFTGELRQATGGQAFPQMVFDHWATLGTDPLDPTTKAGEIVTAARKRHGMKEEVPGWQEYYDKL 842          
BLAST of CF831987 vs. ExPASy Swiss-Prot
Match: EF2_YEAST (Elongation factor 2 OS=Saccharomyces cerevisiae GN=EFT1 PE=1 SV=1)

HSP 1 Score: 218.394 bits (555), Expect = 4.291e-56
Identity = 104/170 (61.18%), Postives = 127/170 (74.71%), Query Frame = -2
Query:  368 EGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYMVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFSGTLRAATSGQAFPQCVFDHWDMMSSDPLEPGTQAAQLVADIRKRKGLKEQMTPLSEFEDKL 877
            EG +  E MR +   + DV LHADAIHRGGGQ+IPT RR  YA  L A P++ EPV++VEIQ PEQA+GGIYSVLN+KRG V  E QRPGTPL+ +KAYLPV ESFGF+G LR AT GQAFPQ VFDHW  + SDPL+P ++A ++V   RKR G+KE++    E+ DKL
Sbjct:  673 EGPIFGEEMRSVRVNILDVTLHADAIHRGGGQIIPTMRRATYAGFLLADPKIQEPVFLVEIQCPEQAVGGIYSVLNKKRGQVVSEEQRPGTPLFTVKAYLPVNESFGFTGELRQATGGQAFPQMVFDHWSTLGSDPLDPTSKAGEIVLAARKRHGMKEEVPGWQEYYDKL 842          
The following BLAST results are available for this feature:
BLAST of CF831987 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 100
Match NameE-valueIdentityDescription
EF2_CRIGR2.349e-6266.47Elongation factor 2 OS=Cricetulus griseus GN=EEF2 ... [more]
EF2_CHICK3.068e-6265.88Elongation factor 2 OS=Gallus gallus GN=EEF2 PE=1 ... [more]
EF2_SCHPO8.926e-6267.06Elongation factor 2 OS=Schizosaccharomyces pombe G... [more]
EF2_DROME7.556e-6164.12Elongation factor 2 OS=Drosophila melanogaster GN=... [more]
EF2_BOMMO2.431e-5962.35Translation elongation factor 2 OS=Bombyx mori GN=... [more]
EF2_NEUCR5.415e-5963.74Elongation factor 2 OS=Neurospora crassa GN=cot-3 ... [more]
EF2_CRYPV1.334e-5761.18Elongation factor 2 OS=Cryptosporidium parvum PE=3... [more]
EF2_KLULA1.129e-5660.59Elongation factor 2 OS=Kluyveromyces lactis GN=EFT... [more]
EF2_SACKL2.515e-5661.18Elongation factor 2 OS=Saccharomyces kluyveri GN=E... [more]
EF2_YEAST4.291e-5661.18Elongation factor 2 OS=Saccharomyces cerevisiae GN... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_01C02_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01C02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF831987 ID=CF831987; Name=CF831987; organism=Citrus sinensis; type=EST; length=878bp
GGGCCCCTCTGTTCTAATATAATAATAATATATCAACCAACGTCGGCCAG
AATTAGTCCCTACACATGACAGAACATCAAACCTTAAAAGCTGTGAATTG
TAAAATTTAAAACCTAGATGACAGAGACAGGGTTACTAAACCCAATCAAC
AGTAATATTACTTTACTAAACACAATGAGGATATTGAAAAACTTTGAAAC
AAAAATAAGCATCAGCAAAAAATATTGCTGCGCAATCTCACCCTTGATGT
CAAGATGAAATGTTTACAGCTCGTCCTCTACTCGGATAGCGGTGTCATTT
GCTCCCTCTTCCTGATATCAGCAACAAGCTGCGCAATCTCACCCTTGATG
TCAAGACGAAATGTTTACAGCTTGTCCTCAAACTCAGATAGTGGTGTCAT
TTGCTCCTTCAAGCCCTTCCTCTTCCTGATATCAGCAACAAGCTGTGCAG
CCTGTGTACCAGGCTCCAGTGGATCGGATGACATCATGTCCCAGTGATCA
AACACACATTGTGGGAAGGCCTGTCCTGACGTTGCAGCCCTCAAAGTGCC
TGAGAATCCAAAGGACTCGATGACGGGAAGGTAAGCCTTGATGTTGTAAA
GGGGGGTACCAGGTCTCTGCATTTCCTCGAACACGTGACCACGTTTCTGA
TTGAGAACACTGTAAATACCACCAAGGGCCTGCTCGGGAGCCTGTATTTC
GACCATGTAGACAGGCTCAAGAAGCCTGGGCTTGGCTGTGAGCTGGGAAG
CATATATGACCCTCCTAGCAGTAGGAATGACTTGACCACCACCTCTGTGA
ATGGCATCAGCATGAAGAACAACATCACATACTTCAAAGCAGATACCTCT
CATGTTCTCTTCAGCCAGCGCACCTTCT
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