CF831987

Overview
NameCF831987
Unique NameCF831987
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length878
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CF831987_ssr19 microsatellite CF831987_ssr19:19..30. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig1001 contig Csv1_Contig1001:724..1601. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF831987 vs. ExPASy Swiss-Prot
Match: SN114_SCHPO (114 kDa U5 small nuclear ribonucleoprotein component homolog OS=Schizosaccharomyces pombe GN=cwf10 PE=1 SV=1)

HSP 1 Score: 167.933 bits (424), Expect = 6.650e-41
Identity = 84/182 (46.15%), Postives = 117/182 (64.29%), Query Frame = -2
Query:  368 EGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYMVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFSGTLRAATSGQAFPQCVFDHWDMMSSDPLEPGTQ------------AAQLVADIRKRKGLKEQMTPLSEFEDKL 877
            EG L +E +R + F + DVVL  + I+RGGGQ+IPTARRV Y+S LTA PRL+EPVYMVE+ AP  +L  IY +L ++RGHV +++ RPG+PLY ++A +PVI+S GF   LR  T GQA  Q VFDHW ++  DPL+   +            A   +   R+RKGL E ++    F+ ++
Sbjct:  789 EGPLCDETIRNVNFRLMDVVLAPEQIYRGGGQIIPTARRVCYSSFLTASPRLMEPVYMVEVHAPADSLPIIYDLLTRRRGHVLQDIPRPGSPLYLVRALIPVIDSCGFETDLRVHTQGQAMCQMVFDHWQVVPGDPLDKSIKPKPLEPARGSDLARDFLIKTRRRKGLVEDVSTTRYFDQEM 970          
BLAST of CF831987 vs. ExPASy Swiss-Prot
Match: U5S1_CHICK (116 kDa U5 small nuclear ribonucleoprotein component OS=Gallus gallus GN=EFTUD2 PE=2 SV=1)

HSP 1 Score: 163.696 bits (413), Expect = 1.254e-39
Identity = 79/182 (43.41%), Postives = 114/182 (62.64%), Query Frame = -2
Query:  368 EGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYMVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFSGTLRAATSGQAFPQCVFDHWDMMSSDPLEPGT------------QAAQLVADIRKRKGLKEQMTPLSEFEDKL 877
            EG L +E +R + F++ D V+  + +HRGGGQ+IPTARRV+Y++ L A PRL+EP Y VE+QAP   +  +Y+VL ++RGHV ++   PG+PLY IKA++P I+SFGF   LR  T GQAF   VF HW ++  DPL+                A + +   R+RKGL E ++    F+D +
Sbjct:  776 EGPLCDELIRNVKFKILDAVIAQEPLHRGGGQIIPTARRVVYSAFLMATPRLMEPYYFVEVQAPADCVSAVYTVLARRRGHVTQDAPIPGSPLYTIKAFIPAIDSFGFETDLRTHTQGQAFSLSVFHHWQIVPGDPLDKSIVIRPLEPQPAPHLAREFMIKTRRRKGLSEDVSISKFFDDPM 957          
BLAST of CF831987 vs. ExPASy Swiss-Prot
Match: U5S1_PONAB (116 kDa U5 small nuclear ribonucleoprotein component OS=Pongo abelii GN=EFTUD2 PE=2 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 1.638e-39
Identity = 79/182 (43.41%), Postives = 114/182 (62.64%), Query Frame = -2
Query:  368 EGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYMVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFSGTLRAATSGQAFPQCVFDHWDMMSSDPLEPGT------------QAAQLVADIRKRKGLKEQMTPLSEFEDKL 877
            EG L +E +R + F++ D V+  + +HRGGGQ+IPTARRV+Y++ L A PRL+EP Y VE+QAP   +  +Y+VL ++RGHV ++   PG+PLY IKA++P I+SFGF   LR  T GQAF   VF HW ++  DPL+                A + +   R+RKGL E ++    F+D +
Sbjct:  776 EGPLCDELIRNVKFKILDAVVAQEPLHRGGGQIIPTARRVVYSAFLMATPRLMEPYYFVEVQAPADCVSAVYTVLARRRGHVTQDAPIPGSPLYTIKAFIPAIDSFGFETDLRTHTQGQAFSLSVFHHWQIVPGDPLDKSIVIRPLEPQPAPHLAREFMIKTRRRKGLSEDVSISKFFDDPM 957          
BLAST of CF831987 vs. ExPASy Swiss-Prot
Match: U5S1_MOUSE (116 kDa U5 small nuclear ribonucleoprotein component OS=Mus musculus GN=Eftud2 PE=2 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 1.638e-39
Identity = 79/182 (43.41%), Postives = 114/182 (62.64%), Query Frame = -2
Query:  368 EGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYMVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFSGTLRAATSGQAFPQCVFDHWDMMSSDPLEPGT------------QAAQLVADIRKRKGLKEQMTPLSEFEDKL 877
            EG L +E +R + F++ D V+  + +HRGGGQ+IPTARRV+Y++ L A PRL+EP Y VE+QAP   +  +Y+VL ++RGHV ++   PG+PLY IKA++P I+SFGF   LR  T GQAF   VF HW ++  DPL+                A + +   R+RKGL E ++    F+D +
Sbjct:  775 EGPLCDELIRNVKFKILDAVVAQEPLHRGGGQIIPTARRVVYSAFLMATPRLMEPYYFVEVQAPADCVSAVYTVLARRRGHVTQDAPIPGSPLYTIKAFIPAIDSFGFETDLRTHTQGQAFSLSVFHHWQIVPGDPLDKSIVIRPLEPQPAPHLAREFMIKTRRRKGLSEDVSISKFFDDPM 956          
BLAST of CF831987 vs. ExPASy Swiss-Prot
Match: U5S1_HUMAN (116 kDa U5 small nuclear ribonucleoprotein component OS=Homo sapiens GN=EFTUD2 PE=1 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 1.638e-39
Identity = 79/182 (43.41%), Postives = 114/182 (62.64%), Query Frame = -2
Query:  368 EGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYMVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFSGTLRAATSGQAFPQCVFDHWDMMSSDPLEPGT------------QAAQLVADIRKRKGLKEQMTPLSEFEDKL 877
            EG L +E +R + F++ D V+  + +HRGGGQ+IPTARRV+Y++ L A PRL+EP Y VE+QAP   +  +Y+VL ++RGHV ++   PG+PLY IKA++P I+SFGF   LR  T GQAF   VF HW ++  DPL+                A + +   R+RKGL E ++    F+D +
Sbjct:  776 EGPLCDELIRNVKFKILDAVVAQEPLHRGGGQIIPTARRVVYSAFLMATPRLMEPYYFVEVQAPADCVSAVYTVLARRRGHVTQDAPIPGSPLYTIKAFIPAIDSFGFETDLRTHTQGQAFSLSVFHHWQIVPGDPLDKSIVIRPLEPQPAPHLAREFMIKTRRRKGLSEDVSISKFFDDPM 957          
BLAST of CF831987 vs. ExPASy Swiss-Prot
Match: U5S1_BOVIN (116 kDa U5 small nuclear ribonucleoprotein component OS=Bos taurus GN=EFTUD2 PE=2 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 1.638e-39
Identity = 79/182 (43.41%), Postives = 114/182 (62.64%), Query Frame = -2
Query:  368 EGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYMVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFSGTLRAATSGQAFPQCVFDHWDMMSSDPLEPGT------------QAAQLVADIRKRKGLKEQMTPLSEFEDKL 877
            EG L +E +R + F++ D V+  + +HRGGGQ+IPTARRV+Y++ L A PRL+EP Y VE+QAP   +  +Y+VL ++RGHV ++   PG+PLY IKA++P I+SFGF   LR  T GQAF   VF HW ++  DPL+                A + +   R+RKGL E ++    F+D +
Sbjct:  776 EGPLCDELIRNVKFKILDAVVAQEPLHRGGGQIIPTARRVVYSAFLMATPRLMEPYYFVEVQAPADCVSAVYTVLARRRGHVTQDAPIPGSPLYTIKAFIPAIDSFGFETDLRTHTQGQAFSLSVFHHWQIVPGDPLDKSIVIRPLEPQPAPHLAREFMIKTRRRKGLSEDVSISKFFDDPM 957          
BLAST of CF831987 vs. ExPASy Swiss-Prot
Match: EF2_STAMF (Elongation factor 2 OS=Staphylothermus marinus (strain ATCC 43588 / DSM 3639 / F1) GN=fusA PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.944e-24
Identity = 63/159 (39.62%), Postives = 92/159 (57.86%), Query Frame = -2
Query:  401 EGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYMVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFSGTLRAATSGQAFPQCVFDHWDMMSSDPLEPGTQAAQLVADIRKRKGLKEQ 877
            EG LA E +RG+   + D ++H D  HRG GQ+ P  R  IYA  LTAKP LLEP+  ++I+AP + LG I +++ +KRG + + +Q+    +  I A +PV E+F  +  LR AT+G+A     F  W  +      P +    LV  IR+RKGLK +
Sbjct:  576 EGPLAMEPVRGVKVILHDAIIHEDPAHRGPGQIYPAVRNAIYAGMLTAKPTLLEPIQKLDIKAPMEYLGNITTIITKKRGKILQVLQQGA--VARIIAEIPVAETFDLAEQLRGATAGKAIWGQEFSRWAPV------PDSMLLDLVRKIRERKGLKPE 726          
BLAST of CF831987 vs. ExPASy Swiss-Prot
Match: EF2_THENV (Elongation factor 2 OS=Thermoproteus neutrophilus (strain DSM 2338 / JCM 9278 / V24Sta) GN=fusA PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 3.316e-24
Identity = 61/165 (36.97%), Postives = 97/165 (58.79%), Query Frame = -2
Query:  380 GALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYMVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFSGTLRAATSGQAFPQCVFDHWDMMSSDPLEPGTQAAQLVADIRKRKGLKEQMTPLSEF 874
            G LA+E MRG+   + D V+H D  HRG  Q++P  +  I+A+ L+A+P +LEP+  ++I+     +G + SVLN+ RG + +  Q+    +  ++A LPV+ESF  S  LRAA +G+ F    F  W  M      P +  A +V  +RK+KGLKE++   ++F
Sbjct:  580 GPLAQEPMRGLKVVLTDAVVHEDPAHRGPAQIMPATKNAIFAAVLSARPTILEPLMKLDIKVAPDYIGAVTSVLNKHRGKILDMTQQ--EYMAYLRAELPVLESFTISDELRAAAAGKIFWSMQFSRWAPM------PESILADMVKQLRKKKGLKEEIPKPTDF 736          
BLAST of CF831987 vs. ExPASy Swiss-Prot
Match: EF2_PYRIL (Elongation factor 2 OS=Pyrobaculum islandicum (strain DSM 4184 / JCM 9189) GN=fusA PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 7.387e-24
Identity = 60/165 (36.36%), Postives = 96/165 (58.18%), Query Frame = -2
Query:  380 GALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYMVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFSGTLRAATSGQAFPQCVFDHWDMMSSDPLEPGTQAAQLVADIRKRKGLKEQMTPLSEF 874
            G LA+E +RG+   + D V+H D  HRG  Q++P  +  I+A+ L+AKP +LEP+  ++I+     +G + SVLN+ RG + +  Q+    +  ++A LPV+ESF  S  LRAA +G+ F    F  W  +      P +    LV  +RK+KGLKE++   ++F
Sbjct:  580 GPLAQEPIRGVKVVLVDAVVHEDPAHRGPAQIMPATKNAIFAAMLSAKPTVLEPLLRLDIKVAPDYIGAVTSVLNKHRGKILDMTQQ--EYMAYLRAELPVLESFTISDELRAAAAGKIFWSMQFSRWAPV------PESMLLDLVKQLRKKKGLKEEIPKPTDF 736          
BLAST of CF831987 vs. ExPASy Swiss-Prot
Match: EF2_PYRAE (Elongation factor 2 OS=Pyrobaculum aerophilum GN=fusA PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 1.260e-23
Identity = 60/165 (36.36%), Postives = 93/165 (56.36%), Query Frame = -2
Query:  380 GALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYMVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFSGTLRAATSGQAFPQCVFDHWDMMSSDPLEPGTQAAQLVADIRKRKGLKEQMTPLSEF 874
            G LA+E MRG+   + D V+H D  HRG  Q++P  +  I+A+ L+A+P LLEP+  ++I+     +G + SVLN+ RG + +  Q+       ++A LPV+ESF  S  LRAA +G+ F    F  W         P +     V  +RK+KGLKE++   ++F
Sbjct:  580 GPLAQEPMRGVKVVLVDAVVHEDPAHRGPAQIMPATKNAIFAAVLSARPTLLEPLMRLDIKVAPDYIGAVTSVLNKHRGKILDMTQQEYMAF--LRAELPVLESFNISDELRAAAAGKIFWSMQFARWAPF------PESMLGDFVKQLRKKKGLKEEIPKPTDF 736          
The following BLAST results are available for this feature:
BLAST of CF831987 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 100
Match NameE-valueIdentityDescription
SN114_SCHPO6.650e-4146.15114 kDa U5 small nuclear ribonucleoprotein compone... [more]
U5S1_CHICK1.254e-3943.41116 kDa U5 small nuclear ribonucleoprotein compone... [more]
U5S1_PONAB1.638e-3943.41116 kDa U5 small nuclear ribonucleoprotein compone... [more]
U5S1_MOUSE1.638e-3943.41116 kDa U5 small nuclear ribonucleoprotein compone... [more]
U5S1_HUMAN1.638e-3943.41116 kDa U5 small nuclear ribonucleoprotein compone... [more]
U5S1_BOVIN1.638e-3943.41116 kDa U5 small nuclear ribonucleoprotein compone... [more]
EF2_STAMF1.944e-2439.62Elongation factor 2 OS=Staphylothermus marinus (st... [more]
EF2_THENV3.316e-2436.97Elongation factor 2 OS=Thermoproteus neutrophilus ... [more]
EF2_PYRIL7.387e-2436.36Elongation factor 2 OS=Pyrobaculum islandicum (str... [more]
EF2_PYRAE1.260e-2336.36Elongation factor 2 OS=Pyrobaculum aerophilum GN=f... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS02_01C02_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01C02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF831987 ID=CF831987; Name=CF831987; organism=Citrus sinensis; type=EST; length=878bp
GGGCCCCTCTGTTCTAATATAATAATAATATATCAACCAACGTCGGCCAG
AATTAGTCCCTACACATGACAGAACATCAAACCTTAAAAGCTGTGAATTG
TAAAATTTAAAACCTAGATGACAGAGACAGGGTTACTAAACCCAATCAAC
AGTAATATTACTTTACTAAACACAATGAGGATATTGAAAAACTTTGAAAC
AAAAATAAGCATCAGCAAAAAATATTGCTGCGCAATCTCACCCTTGATGT
CAAGATGAAATGTTTACAGCTCGTCCTCTACTCGGATAGCGGTGTCATTT
GCTCCCTCTTCCTGATATCAGCAACAAGCTGCGCAATCTCACCCTTGATG
TCAAGACGAAATGTTTACAGCTTGTCCTCAAACTCAGATAGTGGTGTCAT
TTGCTCCTTCAAGCCCTTCCTCTTCCTGATATCAGCAACAAGCTGTGCAG
CCTGTGTACCAGGCTCCAGTGGATCGGATGACATCATGTCCCAGTGATCA
AACACACATTGTGGGAAGGCCTGTCCTGACGTTGCAGCCCTCAAAGTGCC
TGAGAATCCAAAGGACTCGATGACGGGAAGGTAAGCCTTGATGTTGTAAA
GGGGGGTACCAGGTCTCTGCATTTCCTCGAACACGTGACCACGTTTCTGA
TTGAGAACACTGTAAATACCACCAAGGGCCTGCTCGGGAGCCTGTATTTC
GACCATGTAGACAGGCTCAAGAAGCCTGGGCTTGGCTGTGAGCTGGGAAG
CATATATGACCCTCCTAGCAGTAGGAATGACTTGACCACCACCTCTGTGA
ATGGCATCAGCATGAAGAACAACATCACATACTTCAAAGCAGATACCTCT
CATGTTCTCTTCAGCCAGCGCACCTTCT
back to top