CF831987
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF831987 vs. ExPASy Swiss-Prot
Match: SN114_SCHPO (114 kDa U5 small nuclear ribonucleoprotein component homolog OS=Schizosaccharomyces pombe GN=cwf10 PE=1 SV=1) HSP 1 Score: 167.933 bits (424), Expect = 6.650e-41 Identity = 84/182 (46.15%), Postives = 117/182 (64.29%), Query Frame = -2 Query: 368 EGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYMVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFSGTLRAATSGQAFPQCVFDHWDMMSSDPLEPGTQ------------AAQLVADIRKRKGLKEQMTPLSEFEDKL 877 EG L +E +R + F + DVVL + I+RGGGQ+IPTARRV Y+S LTA PRL+EPVYMVE+ AP +L IY +L ++RGHV +++ RPG+PLY ++A +PVI+S GF LR T GQA Q VFDHW ++ DPL+ + A + R+RKGL E ++ F+ ++ Sbjct: 789 EGPLCDETIRNVNFRLMDVVLAPEQIYRGGGQIIPTARRVCYSSFLTASPRLMEPVYMVEVHAPADSLPIIYDLLTRRRGHVLQDIPRPGSPLYLVRALIPVIDSCGFETDLRVHTQGQAMCQMVFDHWQVVPGDPLDKSIKPKPLEPARGSDLARDFLIKTRRRKGLVEDVSTTRYFDQEM 970
BLAST of CF831987 vs. ExPASy Swiss-Prot
Match: U5S1_CHICK (116 kDa U5 small nuclear ribonucleoprotein component OS=Gallus gallus GN=EFTUD2 PE=2 SV=1) HSP 1 Score: 163.696 bits (413), Expect = 1.254e-39 Identity = 79/182 (43.41%), Postives = 114/182 (62.64%), Query Frame = -2 Query: 368 EGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYMVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFSGTLRAATSGQAFPQCVFDHWDMMSSDPLEPGT------------QAAQLVADIRKRKGLKEQMTPLSEFEDKL 877 EG L +E +R + F++ D V+ + +HRGGGQ+IPTARRV+Y++ L A PRL+EP Y VE+QAP + +Y+VL ++RGHV ++ PG+PLY IKA++P I+SFGF LR T GQAF VF HW ++ DPL+ A + + R+RKGL E ++ F+D + Sbjct: 776 EGPLCDELIRNVKFKILDAVIAQEPLHRGGGQIIPTARRVVYSAFLMATPRLMEPYYFVEVQAPADCVSAVYTVLARRRGHVTQDAPIPGSPLYTIKAFIPAIDSFGFETDLRTHTQGQAFSLSVFHHWQIVPGDPLDKSIVIRPLEPQPAPHLAREFMIKTRRRKGLSEDVSISKFFDDPM 957
BLAST of CF831987 vs. ExPASy Swiss-Prot
Match: U5S1_PONAB (116 kDa U5 small nuclear ribonucleoprotein component OS=Pongo abelii GN=EFTUD2 PE=2 SV=1) HSP 1 Score: 163.31 bits (412), Expect = 1.638e-39 Identity = 79/182 (43.41%), Postives = 114/182 (62.64%), Query Frame = -2 Query: 368 EGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYMVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFSGTLRAATSGQAFPQCVFDHWDMMSSDPLEPGT------------QAAQLVADIRKRKGLKEQMTPLSEFEDKL 877 EG L +E +R + F++ D V+ + +HRGGGQ+IPTARRV+Y++ L A PRL+EP Y VE+QAP + +Y+VL ++RGHV ++ PG+PLY IKA++P I+SFGF LR T GQAF VF HW ++ DPL+ A + + R+RKGL E ++ F+D + Sbjct: 776 EGPLCDELIRNVKFKILDAVVAQEPLHRGGGQIIPTARRVVYSAFLMATPRLMEPYYFVEVQAPADCVSAVYTVLARRRGHVTQDAPIPGSPLYTIKAFIPAIDSFGFETDLRTHTQGQAFSLSVFHHWQIVPGDPLDKSIVIRPLEPQPAPHLAREFMIKTRRRKGLSEDVSISKFFDDPM 957
BLAST of CF831987 vs. ExPASy Swiss-Prot
Match: U5S1_MOUSE (116 kDa U5 small nuclear ribonucleoprotein component OS=Mus musculus GN=Eftud2 PE=2 SV=1) HSP 1 Score: 163.31 bits (412), Expect = 1.638e-39 Identity = 79/182 (43.41%), Postives = 114/182 (62.64%), Query Frame = -2 Query: 368 EGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYMVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFSGTLRAATSGQAFPQCVFDHWDMMSSDPLEPGT------------QAAQLVADIRKRKGLKEQMTPLSEFEDKL 877 EG L +E +R + F++ D V+ + +HRGGGQ+IPTARRV+Y++ L A PRL+EP Y VE+QAP + +Y+VL ++RGHV ++ PG+PLY IKA++P I+SFGF LR T GQAF VF HW ++ DPL+ A + + R+RKGL E ++ F+D + Sbjct: 775 EGPLCDELIRNVKFKILDAVVAQEPLHRGGGQIIPTARRVVYSAFLMATPRLMEPYYFVEVQAPADCVSAVYTVLARRRGHVTQDAPIPGSPLYTIKAFIPAIDSFGFETDLRTHTQGQAFSLSVFHHWQIVPGDPLDKSIVIRPLEPQPAPHLAREFMIKTRRRKGLSEDVSISKFFDDPM 956
BLAST of CF831987 vs. ExPASy Swiss-Prot
Match: U5S1_HUMAN (116 kDa U5 small nuclear ribonucleoprotein component OS=Homo sapiens GN=EFTUD2 PE=1 SV=1) HSP 1 Score: 163.31 bits (412), Expect = 1.638e-39 Identity = 79/182 (43.41%), Postives = 114/182 (62.64%), Query Frame = -2 Query: 368 EGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYMVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFSGTLRAATSGQAFPQCVFDHWDMMSSDPLEPGT------------QAAQLVADIRKRKGLKEQMTPLSEFEDKL 877 EG L +E +R + F++ D V+ + +HRGGGQ+IPTARRV+Y++ L A PRL+EP Y VE+QAP + +Y+VL ++RGHV ++ PG+PLY IKA++P I+SFGF LR T GQAF VF HW ++ DPL+ A + + R+RKGL E ++ F+D + Sbjct: 776 EGPLCDELIRNVKFKILDAVVAQEPLHRGGGQIIPTARRVVYSAFLMATPRLMEPYYFVEVQAPADCVSAVYTVLARRRGHVTQDAPIPGSPLYTIKAFIPAIDSFGFETDLRTHTQGQAFSLSVFHHWQIVPGDPLDKSIVIRPLEPQPAPHLAREFMIKTRRRKGLSEDVSISKFFDDPM 957
BLAST of CF831987 vs. ExPASy Swiss-Prot
Match: U5S1_BOVIN (116 kDa U5 small nuclear ribonucleoprotein component OS=Bos taurus GN=EFTUD2 PE=2 SV=1) HSP 1 Score: 163.31 bits (412), Expect = 1.638e-39 Identity = 79/182 (43.41%), Postives = 114/182 (62.64%), Query Frame = -2 Query: 368 EGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYMVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFSGTLRAATSGQAFPQCVFDHWDMMSSDPLEPGT------------QAAQLVADIRKRKGLKEQMTPLSEFEDKL 877 EG L +E +R + F++ D V+ + +HRGGGQ+IPTARRV+Y++ L A PRL+EP Y VE+QAP + +Y+VL ++RGHV ++ PG+PLY IKA++P I+SFGF LR T GQAF VF HW ++ DPL+ A + + R+RKGL E ++ F+D + Sbjct: 776 EGPLCDELIRNVKFKILDAVVAQEPLHRGGGQIIPTARRVVYSAFLMATPRLMEPYYFVEVQAPADCVSAVYTVLARRRGHVTQDAPIPGSPLYTIKAFIPAIDSFGFETDLRTHTQGQAFSLSVFHHWQIVPGDPLDKSIVIRPLEPQPAPHLAREFMIKTRRRKGLSEDVSISKFFDDPM 957
BLAST of CF831987 vs. ExPASy Swiss-Prot
Match: EF2_STAMF (Elongation factor 2 OS=Staphylothermus marinus (strain ATCC 43588 / DSM 3639 / F1) GN=fusA PE=3 SV=1) HSP 1 Score: 113.235 bits (282), Expect = 1.944e-24 Identity = 63/159 (39.62%), Postives = 92/159 (57.86%), Query Frame = -2 Query: 401 EGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYMVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFSGTLRAATSGQAFPQCVFDHWDMMSSDPLEPGTQAAQLVADIRKRKGLKEQ 877 EG LA E +RG+ + D ++H D HRG GQ+ P R IYA LTAKP LLEP+ ++I+AP + LG I +++ +KRG + + +Q+ + I A +PV E+F + LR AT+G+A F W + P + LV IR+RKGLK + Sbjct: 576 EGPLAMEPVRGVKVILHDAIIHEDPAHRGPGQIYPAVRNAIYAGMLTAKPTLLEPIQKLDIKAPMEYLGNITTIITKKRGKILQVLQQGA--VARIIAEIPVAETFDLAEQLRGATAGKAIWGQEFSRWAPV------PDSMLLDLVRKIRERKGLKPE 726
BLAST of CF831987 vs. ExPASy Swiss-Prot
Match: EF2_THENV (Elongation factor 2 OS=Thermoproteus neutrophilus (strain DSM 2338 / JCM 9278 / V24Sta) GN=fusA PE=3 SV=1) HSP 1 Score: 112.464 bits (280), Expect = 3.316e-24 Identity = 61/165 (36.97%), Postives = 97/165 (58.79%), Query Frame = -2 Query: 380 GALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYMVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFSGTLRAATSGQAFPQCVFDHWDMMSSDPLEPGTQAAQLVADIRKRKGLKEQMTPLSEF 874 G LA+E MRG+ + D V+H D HRG Q++P + I+A+ L+A+P +LEP+ ++I+ +G + SVLN+ RG + + Q+ + ++A LPV+ESF S LRAA +G+ F F W M P + A +V +RK+KGLKE++ ++F Sbjct: 580 GPLAQEPMRGLKVVLTDAVVHEDPAHRGPAQIMPATKNAIFAAVLSARPTILEPLMKLDIKVAPDYIGAVTSVLNKHRGKILDMTQQ--EYMAYLRAELPVLESFTISDELRAAAAGKIFWSMQFSRWAPM------PESILADMVKQLRKKKGLKEEIPKPTDF 736
BLAST of CF831987 vs. ExPASy Swiss-Prot
Match: EF2_PYRIL (Elongation factor 2 OS=Pyrobaculum islandicum (strain DSM 4184 / JCM 9189) GN=fusA PE=3 SV=1) HSP 1 Score: 111.309 bits (277), Expect = 7.387e-24 Identity = 60/165 (36.36%), Postives = 96/165 (58.18%), Query Frame = -2 Query: 380 GALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYMVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFSGTLRAATSGQAFPQCVFDHWDMMSSDPLEPGTQAAQLVADIRKRKGLKEQMTPLSEF 874 G LA+E +RG+ + D V+H D HRG Q++P + I+A+ L+AKP +LEP+ ++I+ +G + SVLN+ RG + + Q+ + ++A LPV+ESF S LRAA +G+ F F W + P + LV +RK+KGLKE++ ++F Sbjct: 580 GPLAQEPIRGVKVVLVDAVVHEDPAHRGPAQIMPATKNAIFAAMLSAKPTVLEPLLRLDIKVAPDYIGAVTSVLNKHRGKILDMTQQ--EYMAYLRAELPVLESFTISDELRAAAAGKIFWSMQFSRWAPV------PESMLLDLVKQLRKKKGLKEEIPKPTDF 736
BLAST of CF831987 vs. ExPASy Swiss-Prot
Match: EF2_PYRAE (Elongation factor 2 OS=Pyrobaculum aerophilum GN=fusA PE=3 SV=1) HSP 1 Score: 110.538 bits (275), Expect = 1.260e-23 Identity = 60/165 (36.36%), Postives = 93/165 (56.36%), Query Frame = -2 Query: 380 GALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYMVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFSGTLRAATSGQAFPQCVFDHWDMMSSDPLEPGTQAAQLVADIRKRKGLKEQMTPLSEF 874 G LA+E MRG+ + D V+H D HRG Q++P + I+A+ L+A+P LLEP+ ++I+ +G + SVLN+ RG + + Q+ ++A LPV+ESF S LRAA +G+ F F W P + V +RK+KGLKE++ ++F Sbjct: 580 GPLAQEPMRGVKVVLVDAVVHEDPAHRGPAQIMPATKNAIFAAVLSARPTLLEPLMRLDIKVAPDYIGAVTSVLNKHRGKILDMTQQEYMAF--LRAELPVLESFNISDELRAAAAGKIFWSMQFARWAPF------PESMLGDFVKQLRKKKGLKEEIPKPTDF 736 The following BLAST results are available for this feature:
BLAST of CF831987 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 100
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Sequences
The
following sequences are available for this feature:
EST sequence >CF831987 ID=CF831987; Name=CF831987; organism=Citrus sinensis; type=EST; length=878bpback to top |