CF831987

Overview
NameCF831987
Unique NameCF831987
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length878
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CF831987_ssr19 microsatellite CF831987_ssr19:19..30. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig1001 contig Csv1_Contig1001:724..1601. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF831987 vs. ExPASy Swiss-Prot
Match: EF2_METMT (Elongation factor 2 OS=Methanococcoides methylutens GN=fusA PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 4.481e-21
Identity = 60/165 (36.36%), Postives = 90/165 (54.55%), Query Frame = -2
Query:  380 GALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYMVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFSGTLRAATSGQAFPQCVFDHWDMMSSDPLEPGTQAAQLVADIRKRKGLKEQMTPLSEF 874
            G L++E   G+  ++ D  LH DA+HRG  QVIP +R+ I A+ L A   L EP   V IQ P++ +GG    +  +RG + +      T +   KA  PV E FGF+G +R+AT G+A     F     +  +PL P     ++V+ IR+RKGLK+ +    +F
Sbjct:  571 GPLSKEPCMGVKVKLMDAKLHEDAVHRGPAQVIPASRQAIQAAMLMADDTLFEPYQKVFIQTPQEQMGGATKEIQGRRGIIIDMTSEGDTTIIESKA--PVSELFGFAGDIRSATEGRAMWSTEF-----VGFEPL-PTNMITEVVSGIRERKGLKKDLPQAQDF 727          
BLAST of CF831987 vs. ExPASy Swiss-Prot
Match: EF2_METJA (Elongation factor 2 OS=Methanocaldococcus jannaschii GN=fusA PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 5.853e-21
Identity = 61/156 (39.10%), Postives = 87/156 (55.77%), Query Frame = -2
Query:  407 GALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYMVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFSGTLRAATSGQAFPQCVFDHWDMMSSDPLEPGTQAAQLVADIRKRKGLK 874
            G LA E  +G+  ++ D VLH DAIHRG  Q+IP AR  I  + + A P LLEP+  V I  P+  +G     ++ +RG +  +M++ G  +  IKA  PV E FGF+G +R AT G+      F  ++ +  D  E      QL+  IR+RKGLK
Sbjct:  577 GPLAAEKCQGVKVKLMDAVLHEDAIHRGPAQMIPAARFGIRDAMMQANPVLLEPMQFVYINTPQDFMGAAMREISNRRGQIL-DMEQEG-DMAIIKAKCPVAEMFGFAGAIRGATQGRCLWSIEFAGYEKVPRDMQE------QLIKQIRERKGLK 724          
BLAST of CF831987 vs. ExPASy Swiss-Prot
Match: EF2_METMA (Elongation factor 2 OS=Methanosarcina mazei GN=fusA PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 9.984e-21
Identity = 62/165 (37.58%), Postives = 90/165 (54.55%), Query Frame = -2
Query:  380 GALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYMVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFSGTLRAATSGQAFPQCVFDHWDMMSSDPLEPGTQAAQLVADIRKRKGLKEQMTPLSEF 874
            G L  E +  +   + D  LH DAIHRG  Q+IP +R+ I A  L A+  LLEP   V +Q P+  +GG    L  +RG V   M   G  L  I+A +PV E FGF+G +R+AT G+A     F  +D++      P +   ++V  IR+RKGLK+ +   S++
Sbjct:  571 GPLTREPVANVKCVLVDAKLHEDAIHRGPAQIIPASRQAIQAGMLMAEDSLLEPYQKVFVQVPQLLMGGATKELQGRRG-VILNMTTEG-DLAIIEARVPVAEMFGFAGEIRSATEGRAMWSTEFGGFDVV------PSSILTEIVGQIRERKGLKKDLPKASDY 727          
BLAST of CF831987 vs. ExPASy Swiss-Prot
Match: EF2_IGNH4 (Elongation factor 2 OS=Ignicoccus hospitalis (strain KIN4/I / DSM 18386 / JCM 14125) GN=fusA PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 9.984e-21
Identity = 58/166 (34.94%), Postives = 87/166 (52.41%), Query Frame = -2
Query:  380 EGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYMVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFSGTLRAATSGQAFPQCVFDHWDMMSSDPLEPGTQAAQLVADIRKRKGLKEQMTPLSEF 877
            EG LA+E +RG+   + D V+H D  HRG  Q+ P  R  +YAS LT  P LLEP   ++I+ P + +G +  V+ + RG + E +   G     I A +P+ ESF     LR+ T+G+AF    F  W+ +      P     +L+  IR+RKGL  +     +F
Sbjct:  580 EGPLAKEPVRGVKVILWDAVIHEDPAHRGPAQLYPAVRNAVYASMLTDSPTLLEPWQKLDIRVPNEYIGAVTGVITKHRGKILEVIDMGGQA--RIVAAVPIAESFELPMELRSVTAGRAFWGTEFYGWEPV------PDQLLPELIRKIRERKGLPPEPPKAEDF 737          
BLAST of CF831987 vs. ExPASy Swiss-Prot
Match: EF2_METPE (Elongation factor 2 OS=Methanosphaerula palustris (strain ATCC BAA-1556 / DSM 19958 / E1-9c) GN=fusA PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 1.304e-20
Identity = 61/159 (38.36%), Postives = 84/159 (52.83%), Query Frame = -2
Query:  398 GALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYMVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFSGTLRAATSGQAFPQCVFDHWDMMSSDPLEPGTQAAQLVADIRKRKGLKEQM 874
            G LA+E ++ +   + DV LH DAIHRG  QVIP  R  + A  L A   LLEP+  + I  P   +G   S +  +RG V +      T    +   +PV E FGFSG +R+AT G+A     F  ++++      P +    +V  IRKRKGLKEQM
Sbjct:  572 GPLADEPVQNMKIRLVDVKLHEDAIHRGPAQVIPAVRSAVKAGILYAGDSLLEPIQKISITVPTDQMGNATSQIQGRRGSVLDITSEGDT--ITVVGRVPVAELFGFSGDIRSATEGRAMWNTEFAGFEIV------PNSLVKDVVIAIRKRKGLKEQM 722          
BLAST of CF831987 vs. ExPASy Swiss-Prot
Match: EF2_METBU (Elongation factor 2 OS=Methanococcoides burtonii (strain DSM 6242) GN=fusA PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.703e-20
Identity = 59/165 (35.76%), Postives = 88/165 (53.33%), Query Frame = -2
Query:  380 GALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYMVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFSGTLRAATSGQAFPQCVFDHWDMMSSDPLEPGTQAAQLVADIRKRKGLKEQMTPLSEF 874
            G L++E   G+  ++ D  LH DA+HRG  QVIP +R+ I A+ L A   L EP   V IQ P++ +GG    +  +RG + +      T +   KA  PV E FGF+G +R+AT G+A     F  ++ +      P +   ++V  IRKRKGLK  +    +F
Sbjct:  571 GPLSKEPCMGVKVKLMDAKLHEDAVHRGPAQVIPASRQAIQAAMLMADDTLFEPYQKVFIQVPQEQMGGATKEIQGRRGVIIDMTSEGDTTVIESKA--PVSELFGFAGDIRSATEGRAMWSTEFAGFEPL------PMSLMTEVVTGIRKRKGLKAALPQAEDF 727          
BLAST of CF831987 vs. ExPASy Swiss-Prot
Match: EF2_METBF (Elongation factor 2 OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=fusA PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.703e-20
Identity = 63/165 (38.18%), Postives = 89/165 (53.94%), Query Frame = -2
Query:  380 GALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYMVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFSGTLRAATSGQAFPQCVFDHWDMMSSDPLEPGTQAAQLVADIRKRKGLKEQMTPLSEF 874
            G L  E +  +   + D  LH DAIHRG  QVIP +R+ I A  L A   LLEP   V +Q P+  +GG    L  +RG +   M   G  L  I+A +PV E FGF+G +R+AT G+A     F  +D++      P +    +V  IR+RKGLK+++   S+F
Sbjct:  571 GPLTREPVANVKCVLVDAKLHEDAIHRGPAQVIPASRQAIQAGMLMADDTLLEPYQKVFVQVPQLLMGGATKELQGRRG-IILNMSTEG-DLAIIEARVPVAEMFGFAGEIRSATEGRAMWSTEFGGFDIV------PTSIQNDIVGQIRERKGLKKELPKASDF 727          
BLAST of CF831987 vs. ExPASy Swiss-Prot
Match: EF2_METTE (Elongation factor 2 OS=Methanosarcina thermophila GN=fusA PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 2.905e-20
Identity = 63/165 (38.18%), Postives = 89/165 (53.94%), Query Frame = -2
Query:  380 GALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYMVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFSGTLRAATSGQAFPQCVFDHWDMMSSDPLEPGTQAAQLVADIRKRKGLKEQMTPLSEF 874
            G L  E +  +   + D  LH DAIHRG  QVIP AR+ I A  L A+  LLEP   V +Q P+  +GG    L  +RG +   M   G  L  I+A +PV E FGF+G +R+AT G+A     F  +D++      P +   ++V  IR+RKGLK  +   S++
Sbjct:  571 GPLTREPVANMKCVLVDAKLHEDAIHRGPAQVIPAARQAIQAGMLMAEDCLLEPYQKVFVQVPQLTMGGATKELQGRRG-IILNMTTEG-DLAIIEARVPVAEMFGFAGEIRSATEGRAMWSTEFGGFDIV------PTSIQTEVVGQIRERKGLKRDLPKASDY 727          
BLAST of CF831987 vs. ExPASy Swiss-Prot
Match: EF2_METKA (Elongation factor 2 OS=Methanopyrus kandleri GN=fusA PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 3.794e-20
Identity = 60/169 (35.50%), Postives = 89/169 (52.66%), Query Frame = -2
Query:  374 EGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYMVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFSGTLRAATSGQAFPQCVFDHWDMMSSDPLEPGTQAAQLVADIRKRKGLK-EQMTPLSEFED 877
            EG LA+E  RG+   + D  +H D +HRG  QVIP  +R IY   L A   LLEP+  + +  P+  +G +   +  +RG + EE+Q+ G  +  IK   PV E FGF+  +R+AT G+A        ++ +      P     Q++ +IR+RKGLK E   P    ED
Sbjct: 1094 EGPLAKEPCRGVKVSLVDAEIHEDPVHRGPAQVIPAIKRAIYGGMLLADTHLLEPMQYIYVTVPQDYMGAVTKEIQGRRGTI-EEIQQEGDTVI-IKGKAPVAEMFGFANDIRSATEGRAIWTTEHAGYERV------PEELEEQIIREIRERKGLKPEPPKPEDYIED 1254          
BLAST of CF831987 vs. ExPASy Swiss-Prot
Match: EF2_ENCCU (Elongation factor 2 OS=Encephalitozoon cuniculi GN=EFT1 PE=1 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 3.794e-20
Identity = 59/170 (34.71%), Postives = 86/170 (50.59%), Query Frame = -2
Query:  368 EGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYMVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFSGTLRAATSGQAFPQCVFDHWDMMSSDPLEPGTQAAQLVADIRKRKGLKEQMTPLSEFEDKL 877
            +G L  E MRG+ FE+ D VLHADAIHRG  Q++   + +     L A P L EP+Y VEI  P    G + ++L  KRG   +    PG     I   LPV ESF F+  L++ + G+A     F H+ ++  +  +P +   + V  +RK K +         F D+L
Sbjct:  681 DGPLIGEVMRGLKFELKDAVLHADAIHRGINQLLQPVKNLCKGLLLAAGPILYEPIYEVEITTPNDYSGAVTTILLSKRGTAEDFKTLPGNDTTMITGTLPVKESFTFNEDLKSGSRGKAGASMRFSHYSILPGNLEDPNSLMFKTVEAVRKLKKMNPAPPTPDSFFDRL 850          
The following BLAST results are available for this feature:
BLAST of CF831987 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 100
Match NameE-valueIdentityDescription
EF2_METMT4.481e-2136.36Elongation factor 2 OS=Methanococcoides methyluten... [more]
EF2_METJA5.853e-2139.10Elongation factor 2 OS=Methanocaldococcus jannasch... [more]
EF2_METMA9.984e-2137.58Elongation factor 2 OS=Methanosarcina mazei GN=fus... [more]
EF2_IGNH49.984e-2134.94Elongation factor 2 OS=Ignicoccus hospitalis (stra... [more]
EF2_METPE1.304e-2038.36Elongation factor 2 OS=Methanosphaerula palustris ... [more]
EF2_METBU1.703e-2035.76Elongation factor 2 OS=Methanococcoides burtonii (... [more]
EF2_METBF1.703e-2038.18Elongation factor 2 OS=Methanosarcina barkeri (str... [more]
EF2_METTE2.905e-2038.18Elongation factor 2 OS=Methanosarcina thermophila ... [more]
EF2_METKA3.794e-2035.50Elongation factor 2 OS=Methanopyrus kandleri GN=fu... [more]
EF2_ENCCU3.794e-2034.71Elongation factor 2 OS=Encephalitozoon cuniculi GN... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_01C02_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01C02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF831987 ID=CF831987; Name=CF831987; organism=Citrus sinensis; type=EST; length=878bp
GGGCCCCTCTGTTCTAATATAATAATAATATATCAACCAACGTCGGCCAG
AATTAGTCCCTACACATGACAGAACATCAAACCTTAAAAGCTGTGAATTG
TAAAATTTAAAACCTAGATGACAGAGACAGGGTTACTAAACCCAATCAAC
AGTAATATTACTTTACTAAACACAATGAGGATATTGAAAAACTTTGAAAC
AAAAATAAGCATCAGCAAAAAATATTGCTGCGCAATCTCACCCTTGATGT
CAAGATGAAATGTTTACAGCTCGTCCTCTACTCGGATAGCGGTGTCATTT
GCTCCCTCTTCCTGATATCAGCAACAAGCTGCGCAATCTCACCCTTGATG
TCAAGACGAAATGTTTACAGCTTGTCCTCAAACTCAGATAGTGGTGTCAT
TTGCTCCTTCAAGCCCTTCCTCTTCCTGATATCAGCAACAAGCTGTGCAG
CCTGTGTACCAGGCTCCAGTGGATCGGATGACATCATGTCCCAGTGATCA
AACACACATTGTGGGAAGGCCTGTCCTGACGTTGCAGCCCTCAAAGTGCC
TGAGAATCCAAAGGACTCGATGACGGGAAGGTAAGCCTTGATGTTGTAAA
GGGGGGTACCAGGTCTCTGCATTTCCTCGAACACGTGACCACGTTTCTGA
TTGAGAACACTGTAAATACCACCAAGGGCCTGCTCGGGAGCCTGTATTTC
GACCATGTAGACAGGCTCAAGAAGCCTGGGCTTGGCTGTGAGCTGGGAAG
CATATATGACCCTCCTAGCAGTAGGAATGACTTGACCACCACCTCTGTGA
ATGGCATCAGCATGAAGAACAACATCACATACTTCAAAGCAGATACCTCT
CATGTTCTCTTCAGCCAGCGCACCTTCT
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