CF831987

Overview
NameCF831987
Unique NameCF831987
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length878
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CF831987_ssr19 microsatellite CF831987_ssr19:19..30. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig1001 contig Csv1_Contig1001:724..1601. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF831987 vs. ExPASy Swiss-Prot
Match: EF2_METS3 (Elongation factor 2 OS=Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861) GN=fusA PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 6.471e-20
Identity = 58/159 (36.48%), Postives = 88/159 (55.35%), Query Frame = -2
Query:  401 EGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYMVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFSGTLRAATSGQAFPQCVFDHWDMMSSDPLEPGTQAAQLVADIRKRKGLKEQ 877
            +G LA+E   G+ F++ D  LH DA+HRG  QV+P  R  IYAS ++A P LLEP+  V I  P+  +G     +  +RG + +  Q     +  I++ +PV E FGF+G +R+A  G    +C++     MS     P     Q+V +IR+RKGL  +
Sbjct:  571 DGPLAKEIAMGLKFKLHDAKLHEDAVHRGPAQVLPAIRNAIYASMMSAGPTLLEPMQKVFINTPQDYMGPCTREIQNRRGQIVDMGQE--GDMATIESKVPVAEMFGFAGDIRSAAEG----RCLWS--TEMSGFERLPREMQNQIVKEIRQRKGLSPE 721          
BLAST of CF831987 vs. ExPASy Swiss-Prot
Match: EF2_METM5 (Elongation factor 2 OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=fusA PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 8.452e-20
Identity = 57/158 (36.08%), Postives = 86/158 (54.43%), Query Frame = -2
Query:  401 GALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYMVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFSGTLRAATSGQAFPQCVFDHWDMMSSDPLEPGTQAAQLVADIRKRKGLKEQ 874
            G LA E ++G+  ++ D   H DAIHRG  Q+IP  R  +  +   AKP LLEP+  V I  P+  +G     +N +RG +  +M++ G  +  IK+ +PV E FGF+G +R AT G+      F  ++ +      PG    ++V  IR RKGLK +
Sbjct:  578 GPLAAEKVQGVKIKLMDATFHEDAIHRGPAQIIPAVRFGVRDAVSQAKPVLLEPMQSVYINTPQDYMGDGMKEINNRRGQIL-DMEQEG-DMSIIKSSVPVAEMFGFAGAIRGATQGRCLWSVEFSGFEKV------PGELQPKIVKQIRDRKGLKSE 727          
BLAST of CF831987 vs. ExPASy Swiss-Prot
Match: EF2_METVS (Elongation factor 2 OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=fusA PE=3 SV=2)

HSP 1 Score: 96.6709 bits (239), Expect = 1.883e-19
Identity = 56/158 (35.44%), Postives = 85/158 (53.80%), Query Frame = -2
Query:  401 GALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYMVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFSGTLRAATSGQAFPQCVFDHWDMMSSDPLEPGTQAAQLVADIRKRKGLKEQ 874
            G LA E  +G+  ++ D   H DAIHRG  Q+IP  R  +  +  +AKP LLEP+  + I  P+  +G     +N +RG +  +M++ G  +  IK  +PV E FGF+G +R AT G+      F  ++ +      P     ++VA IR RKGLK +
Sbjct:  578 GPLASERAQGVKIKLIDATFHEDAIHRGPSQIIPAIRFGVRDAVSSAKPILLEPMQKIYINTPQDYMGDAIREINNRRGQIV-DMEQEG-DMAIIKGSVPVAEMFGFAGAIRGATQGRCLWSVEFSGFERV------PNEIQTKVVAQIRDRKGLKSE 727          
BLAST of CF831987 vs. ExPASy Swiss-Prot
Match: RIA1_SCHPO (Ribosome assembly protein 1 OS=Schizosaccharomyces pombe GN=ria1 PE=2 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 5.478e-19
Identity = 57/181 (31.49%), Postives = 93/181 (51.38%), Query Frame = -2
Query:  410 EGALAEENMRGICFEVCDVVLHADAIHRG---------GGQVIPTARRVIYASQLTAKPRLLEPVYMVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFSGTLRAATSGQAFPQCVFDHWDMMSSDPL-EPGTQ---------------AAQLVADIRKRKGL 877
            +G L  E ++GIC  +    +  D+              GQVI   +  I    L   PRL+  +Y  ++QA  + LG +Y V++++RG V +E  + GTP + +KA +PV+ESFGF+  +   TSG A+PQ +F  ++M+  +P   P T+               A + + ++RKRKGL
Sbjct:  802 QGPLCAEPVQGICVSIDQFDISDDSEDSKLLTINNPQIPGQVISVVKESIRHGFLGWSPRLMLAMYSCDVQATSEVLGRVYGVVSKRRGRVIDEEMKEGTPFFIVKALIPVVESFGFAVEILKRTSGAAYPQLIFHGFEMLDENPFWVPTTEEELEDLGELADRENIAKRYMLNVRKRKGL 982          
BLAST of CF831987 vs. ExPASy Swiss-Prot
Match: ETUD1_MOUSE (Elongation factor Tu GTP-binding domain-containing protein 1 OS=Mus musculus GN=Eftud1 PE=2 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 5.478e-19
Identity = 52/142 (36.62%), Postives = 76/142 (53.52%), Query Frame = -2
Query:  410 GQVIPTARRVIYASQLTAKPRLLEPVYMVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFSGTLRAATSGQAFPQCVFDHWDMMSSDPL----------------EPGTQAAQLVADIRKRKGL 787
            GQ+I T +     +      RL+  +Y  +I A    LG +Y+VL+++ G V +E  + GT ++ IKA LPV ESFGF+  +R  TSG A PQ VF HW+++ SDP                 +   QA + +  +RKRKGL
Sbjct:  966 GQLIATMKEACRYALQVKPQRLMAAMYTCDIMATSDVLGRVYAVLSKREGRVLQEEMKEGTDMFIIKAVLPVAESFGFADEIRKRTSGLASPQLVFSHWEVIPSDPFWVPTTEEEYLHFGEKADSENQARKYMNAVRKRKGL 1107          
BLAST of CF831987 vs. ExPASy Swiss-Prot
Match: EF2_METMP (Elongation factor 2 OS=Methanococcus maripaludis GN=fusA PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 7.155e-19
Identity = 56/158 (35.44%), Postives = 87/158 (55.06%), Query Frame = -2
Query:  401 GALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYMVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFSGTLRAATSGQAFPQCVFDHWDMMSSDPLEPGTQAAQLVADIRKRKGLKEQ 874
            G LA E ++G+   + D   H DAIHRG  Q+IP  R  +  +   AKP LLEP+  V I  P+  +G     +N +RG +  +M++ G  +  IK+ +PV E FGF+G +R AT G+      F  ++ + ++ L+P     ++   IR RKGLK +
Sbjct:  578 GPLAAEKVQGVKIRLVDATFHEDAIHRGPAQIIPAVRFGVRDAVAQAKPVLLEPMQSVYINTPQDYMGDGMKEINNRRGQIL-DMEQEG-DMSIIKSSVPVAEMFGFAGAIRGATQGRCLWSVEFSGFERVPNE-LQP-----KIAKQIRDRKGLKSE 727          
BLAST of CF831987 vs. ExPASy Swiss-Prot
Match: EF2_METM7 (Elongation factor 2 OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=fusA PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 7.155e-19
Identity = 56/158 (35.44%), Postives = 87/158 (55.06%), Query Frame = -2
Query:  401 GALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYMVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFSGTLRAATSGQAFPQCVFDHWDMMSSDPLEPGTQAAQLVADIRKRKGLKEQ 874
            G LA E ++G+   + D   H DAIHRG  Q+IP  R  +  +   AKP LLEP+  V I  P+  +G     +N +RG +  +M++ G  +  IK+ +PV E FGF+G +R AT G+      F  ++ + ++ L+P     ++   IR RKGLK +
Sbjct:  578 GPLAAEKVQGVKIRLVDATFHEDAIHRGPAQIIPAVRFGVRDAVAQAKPVLLEPMQSVYINTPQDYMGDGMKEINNRRGQIL-DMEQEG-DMSIIKSSVPVAEMFGFAGAIRGATQGRCLWSVEFSGFERVPAE-LQP-----KIAKQIRDRKGLKSE 727          
BLAST of CF831987 vs. ExPASy Swiss-Prot
Match: EF2_METM6 (Elongation factor 2 OS=Methanococcus maripaludis (strain C6 / ATCC BAA-1332) GN=fusA PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 7.155e-19
Identity = 56/158 (35.44%), Postives = 87/158 (55.06%), Query Frame = -2
Query:  401 GALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYMVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFSGTLRAATSGQAFPQCVFDHWDMMSSDPLEPGTQAAQLVADIRKRKGLKEQ 874
            G LA E ++G+   + D   H DAIHRG  Q+IP  R  +  +   AKP LLEP+  V I  P+  +G     +N +RG +  +M++ G  +  IK+ +PV E FGF+G +R AT G+      F  ++ + ++ L+P     ++   IR RKGLK +
Sbjct:  578 GPLAAEKVQGVKIRLVDATFHEDAIHRGPAQIIPAVRFGVRDAVAQAKPVLLEPMQSVYINTPQDYMGDGMKEINNRRGQIL-DMEQEG-DMSIIKSSVPVAEMFGFAGAIRGATQGRCLWSVEFSGFERVPAE-LQP-----KIAKQIRDRKGLKSE 727          
BLAST of CF831987 vs. ExPASy Swiss-Prot
Match: ETUD1_HUMAN (Elongation factor Tu GTP-binding domain-containing protein 1 OS=Homo sapiens GN=EFTUD1 PE=1 SV=2)

HSP 1 Score: 94.3597 bits (233), Expect = 9.344e-19
Identity = 52/142 (36.62%), Postives = 76/142 (53.52%), Query Frame = -2
Query:  410 GQVIPTARRVIYASQLTAKPRLLEPVYMVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFSGTLRAATSGQAFPQCVFDHWDMMSSDPL----------------EPGTQAAQLVADIRKRKGL 787
            GQ+I T +     +      RL+  +Y  +I A    LG +Y+VL+++ G V +E  + GT ++ IKA LPV ESFGF+  +R  TSG A PQ VF HW+++ SDP                 +   QA + +  +RKRKGL
Sbjct:  959 GQLIATMKEACRYALQVKPQRLMAAMYTCDIMATGDVLGRVYAVLSKREGRVLQEEMKEGTDMFIIKAVLPVAESFGFADEIRKRTSGLASPQLVFSHWEIIPSDPFWVPTTEEEYLHFGEKADSENQARKYMNAVRKRKGL 1100          
BLAST of CF831987 vs. ExPASy Swiss-Prot
Match: EF2_THEAC (Elongation factor 2 OS=Thermoplasma acidophilum GN=fusA PE=3 SV=2)

HSP 1 Score: 93.5893 bits (231), Expect = 1.594e-18
Identity = 57/158 (36.08%), Postives = 88/158 (55.70%), Query Frame = -2
Query:  401 GALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYMVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFSGTLRAATSGQAFPQCVFDHWDMMSSDPLEPGTQAAQLVADIRKRKGLKEQ 874
            G LA E + G+   + D  LH D+IHRG  QVIP  R  IY +   AK  LLEPV  V I  P++ +G   + + Q+RG + E+M++ G  + ++ A +PV   FGF+  +R AT G+     V   ++      + P  Q + +V  IR+RKGL+++
Sbjct:  573 GPLANEKVFGVKARLVDAKLHEDSIHRGPAQVIPAGRNSIYGAMCEAKRVLLEPVQRVFINVPQEEMGAAINEIQQRRG-IIEDMKQEGDEI-SLTAKVPVAGMFGFASAIRGATGGK-----VLWSFENAGYQKVPPELQDS-IVRSIRERKGLRQE 722          
The following BLAST results are available for this feature:
BLAST of CF831987 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 100
Match NameE-valueIdentityDescription
EF2_METS36.471e-2036.48Elongation factor 2 OS=Methanobrevibacter smithii ... [more]
EF2_METM58.452e-2036.08Elongation factor 2 OS=Methanococcus maripaludis (... [more]
EF2_METVS1.883e-1935.44Elongation factor 2 OS=Methanococcus vannielii (st... [more]
RIA1_SCHPO5.478e-1931.49Ribosome assembly protein 1 OS=Schizosaccharomyces... [more]
ETUD1_MOUSE5.478e-1936.62Elongation factor Tu GTP-binding domain-containing... [more]
EF2_METMP7.155e-1935.44Elongation factor 2 OS=Methanococcus maripaludis G... [more]
EF2_METM77.155e-1935.44Elongation factor 2 OS=Methanococcus maripaludis (... [more]
EF2_METM67.155e-1935.44Elongation factor 2 OS=Methanococcus maripaludis (... [more]
ETUD1_HUMAN9.344e-1936.62Elongation factor Tu GTP-binding domain-containing... [more]
EF2_THEAC1.594e-1836.08Elongation factor 2 OS=Thermoplasma acidophilum GN... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_01C02_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01C02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF831987 ID=CF831987; Name=CF831987; organism=Citrus sinensis; type=EST; length=878bp
GGGCCCCTCTGTTCTAATATAATAATAATATATCAACCAACGTCGGCCAG
AATTAGTCCCTACACATGACAGAACATCAAACCTTAAAAGCTGTGAATTG
TAAAATTTAAAACCTAGATGACAGAGACAGGGTTACTAAACCCAATCAAC
AGTAATATTACTTTACTAAACACAATGAGGATATTGAAAAACTTTGAAAC
AAAAATAAGCATCAGCAAAAAATATTGCTGCGCAATCTCACCCTTGATGT
CAAGATGAAATGTTTACAGCTCGTCCTCTACTCGGATAGCGGTGTCATTT
GCTCCCTCTTCCTGATATCAGCAACAAGCTGCGCAATCTCACCCTTGATG
TCAAGACGAAATGTTTACAGCTTGTCCTCAAACTCAGATAGTGGTGTCAT
TTGCTCCTTCAAGCCCTTCCTCTTCCTGATATCAGCAACAAGCTGTGCAG
CCTGTGTACCAGGCTCCAGTGGATCGGATGACATCATGTCCCAGTGATCA
AACACACATTGTGGGAAGGCCTGTCCTGACGTTGCAGCCCTCAAAGTGCC
TGAGAATCCAAAGGACTCGATGACGGGAAGGTAAGCCTTGATGTTGTAAA
GGGGGGTACCAGGTCTCTGCATTTCCTCGAACACGTGACCACGTTTCTGA
TTGAGAACACTGTAAATACCACCAAGGGCCTGCTCGGGAGCCTGTATTTC
GACCATGTAGACAGGCTCAAGAAGCCTGGGCTTGGCTGTGAGCTGGGAAG
CATATATGACCCTCCTAGCAGTAGGAATGACTTGACCACCACCTCTGTGA
ATGGCATCAGCATGAAGAACAACATCACATACTTCAAAGCAGATACCTCT
CATGTTCTCTTCAGCCAGCGCACCTTCT
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