CF831987

Overview
NameCF831987
Unique NameCF831987
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length878
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF831987 vs. ExPASy Swiss-Prot
Match: RIA1_YEAST (Ribosome assembly protein 1 OS=Saccharomyces cerevisiae GN=RIA1 PE=1 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 8.746e-17
Identity = 60/185 (32.43%), Postives = 91/185 (49.19%), Query Frame = -2
Query:  410 EGALAEENMRGICFEVCDV-VLHADAIHRG------------GGQVIPTARRVIYASQLTAKPRLLEPVYMVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFSGTLRAATSGQAFPQCVFDHWDMMSSDPLEPGTQAAQL-----VAD-----------IRKRKGL 877
            EG LA E ++G+C  V  V  +  D I                G++I + R  I+ + L   PR++  +Y  +IQ     LG +Y+V+ Q+ G +  E  + GTP + I+A++PV+E+FG S  +R  TSG A PQ VF  ++ +  DP    T   +L      AD           IR+RKGL
Sbjct:  907 EGPLANEPVQGMCVLVESVHKMSQDEIESIEDPRYQQHIVDLSGRLITSTRDAIHEAFLDWSPRIMWAIYSCDIQTSVDVLGKVYAVILQRHGKIISEEMKEGTPFFQIEAHVPVVEAFGLSEDIRKRTSGAAQPQLVFSGFECIDLDPFWVPTTEEELEELGDTADRENIARKHMNAIRRRKGL 1091          
BLAST of CF831987 vs. ExPASy Swiss-Prot
Match: EF2_THEGJ (Elongation factor 2 OS=Thermococcus gammatolerans (strain DSM 15229 / JCM 11827 / EJ3) GN=fusA PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 8.746e-17
Identity = 55/156 (35.26%), Postives = 82/156 (52.56%), Query Frame = -2
Query:  410 EGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYMVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFSGTLRAATSGQAFPQCVFDHWDMMSSDPLEPGTQAAQLVADIRKRKGL 877
            EG LA+E +  +   + D  +H D +HRG  Q+ P  R  I+ + + A P L EP   V I  P + +G +   LNQ+RG +  +M++ G  +  I    PV E FGF+G +R ATSG+A      +H    +     P   A Q++  IR+RKGL
Sbjct:  571 EGPLAKEPVMKVIVRLHDAKIHEDNVHRGPAQIYPAIRTAIHCAMMKAGPVLYEPYQKVIINIPYEYMGAVSRELNQRRGQLI-DMRQEGEVMI-IIGEAPVAEMFGFAGAIRGATSGKAL--WTTEH----AGFKRVPNELAQQIIRQIRQRKGL 718          
BLAST of CF831987 vs. ExPASy Swiss-Prot
Match: EF2_METTH (Elongation factor 2 OS=Methanobacterium thermoautotrophicum GN=fusA PE=3 SV=2)

HSP 1 Score: 87.8113 bits (216), Expect = 8.746e-17
Identity = 47/159 (29.56%), Postives = 83/159 (52.20%), Query Frame = -2
Query:  401 GALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYMVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFSGTLRAATSGQAFPQCVFDHWDMMSSD-PLEPGTQAAQLVADIRKRKGLKEQ 874
            G +A+E + G+  ++ D  +H DA+HRG  QV+P  R+ I+ + ++A+P LLEP+  V I  P+  +G     +  +RG +    Q     +  +++ +PV E FGF+G +R+AT G+         W   ++     P      +  ++R RKGL  +
Sbjct:  572 GPVAKEKVMGVKIKLMDAKIHEDAVHRGPAQVLPAIRKGIFGAMMSAEPVLLEPIQKVFINVPQDYMGSATREIQNRRGQIVNMTQE--GDMVTVESTVPVAEMFGFAGDIRSATEGRCL-------WSTENAGFERLPNELQHTITREVRTRKGLSPE 721          
BLAST of CF831987 vs. ExPASy Swiss-Prot
Match: EF2_THEON (Elongation factor 2 OS=Thermococcus onnurineus (strain NA1) GN=fusA PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.492e-16
Identity = 54/157 (34.39%), Postives = 81/157 (51.59%), Query Frame = -2
Query:  410 EGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYMVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFSGTLRAATSGQAFPQCVFDHWDMMSSD-PLEPGTQAAQLVADIRKRKGL 877
            EG LA+E +  +   + D  +H D +HRG  Q+ P  R  I+ + + A P L EP   V I  P + +G +   +NQ+RG +  +M++ G  +  I +  PV E FGF+G LR ATSG+A        W    +     P   A  ++  IR+RKGL
Sbjct:  571 EGPLAKEPVMKVMVRLHDAKIHEDNVHRGPAQIYPAIRTAIHCAMMKAGPVLYEPYQKVIINIPYEYMGSVSREINQRRGQLI-DMRQEGEVMI-IISEAPVAEMFGFAGALRGATSGKAL-------WSTEHAGFKRVPNELAVNIIRQIRQRKGL 718          
BLAST of CF831987 vs. ExPASy Swiss-Prot
Match: EF2_PYRHO (Elongation factor 2 OS=Pyrococcus horikoshii GN=fusA PE=3 SV=2)

HSP 1 Score: 87.0409 bits (214), Expect = 1.492e-16
Identity = 53/157 (33.76%), Postives = 82/157 (52.23%), Query Frame = -2
Query:  410 EGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYMVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFSGTLRAATSGQAFPQCVFDHWDMMSSD-PLEPGTQAAQLVADIRKRKGL 877
            EG LA E +  +   + D  +H D +HRG  Q+ P  R  I+ + + + P L EP   V I  P + +G +   + Q+RG +  +M++ G  +  I A  PV E FGF+G++R+ATSG+A        W    +     P   A Q++  IR+RKGL
Sbjct:  571 EGPLAREPVMKVIVRLLDAQVHEDNVHRGPAQIYPAIRTAIHCAMMKSNPVLYEPYQKVIINIPYEYMGAVSREITQRRGQLV-DMKQEG-EVMTIIAEAPVAEMFGFAGSIRSATSGRAL-------WSTEHAGFKRVPNELAQQIIRQIRQRKGL 718          
BLAST of CF831987 vs. ExPASy Swiss-Prot
Match: EF2_PYRAB (Elongation factor 2 OS=Pyrococcus abyssi GN=fusA PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.492e-16
Identity = 53/157 (33.76%), Postives = 82/157 (52.23%), Query Frame = -2
Query:  410 EGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYMVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFSGTLRAATSGQAFPQCVFDHWDMMSSD-PLEPGTQAAQLVADIRKRKGL 877
            EG LA+E +  +   + D  +H D +HRG  Q+ P  R  I+ + + + P L EP   V I  P + +G +   + Q+RG +  +M++ G  +  I A  PV E FGF+G +R+ATSG+A        W    +     P   A Q++  IR+RKGL
Sbjct:  571 EGPLAKEPVMKVIVRLIDAQVHEDNVHRGPAQIYPAIRTAIHCAMMKSNPVLYEPYQKVIINIPYEYMGAVSREITQRRGQLV-DMKQEG-EVMTIIAEAPVAEMFGFAGAIRSATSGRAL-------WSTEHAGFKRVPNELAQQIIRQIRQRKGL 718          
BLAST of CF831987 vs. ExPASy Swiss-Prot
Match: EF2_THESM (Elongation factor 2 OS=Thermococcus sibiricus (strain MM 739 / DSM 12597) GN=fusA PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 3.324e-16
Identity = 52/157 (33.12%), Postives = 80/157 (50.96%), Query Frame = -2
Query:  410 EGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYMVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFSGTLRAATSGQAFPQCVFDHWDMMSSD-PLEPGTQAAQLVADIRKRKGL 877
            EG LA E +  +   + D  +H D +HRG  Q+ P  R  I+ + + + P L EP   V I  P + +G +   +NQ+RG +  +M++ G  +  I +  PV E FGF+G +R ATSG+A        W    +     P   A  ++  IR+RKGL
Sbjct:  571 EGPLAREPVMKVIVRLVDAKIHEDNVHRGPAQIYPAIRTAIHCAMMKSNPVLYEPYQKVVINVPYEYMGSVSREMNQRRGQLI-DMRQEGEVMI-IISEAPVAEMFGFAGAIRGATSGRAL-------WSTEHAGFKRVPTELAINIIRQIRQRKGL 718          
BLAST of CF831987 vs. ExPASy Swiss-Prot
Match: EF2_HALSA (Elongation factor 2 OS=Halobacterium salinarium GN=fusA PE=3 SV=2)

HSP 1 Score: 85.8853 bits (211), Expect = 3.324e-16
Identity = 55/160 (34.38%), Postives = 87/160 (54.37%), Query Frame = -2
Query:  398 EGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYMVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFSGTLRAATSGQAFPQCVFDHWDMMSSDPLEPGTQAAQLVADIRKRKGLKEQM 877
            +G LA E + G    + D  LH DAIHRG  QVIP  R  ++ + + A  RLLEP+  V I  P + +G     +  +RG V ++M + G  L  ++   PV E  GFS  +R+AT G+A        + +M +D L+      +++ +IR+RKG+K ++
Sbjct:  570 DGPLAAEPVEGALIRLHDARLHEDAIHRGPAQVIPATRDAVHRALIDADIRLLEPIQDVRIDVPSEHMGAASGEVQGRRGRV-DDMYQEG-DLMVVEGIAPVDEMIGFSSDIRSATEGRASWNTENAGFRVM-ADNLQ-----REIIMEIRERKGMKTEL 721          
BLAST of CF831987 vs. ExPASy Swiss-Prot
Match: EF2_HALS3 (Elongation factor 2 OS=Halobacterium salinarum (strain ATCC 29341 / DSM 671 / R1) GN=fusA PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 3.324e-16
Identity = 55/160 (34.38%), Postives = 87/160 (54.37%), Query Frame = -2
Query:  398 EGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYMVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFSGTLRAATSGQAFPQCVFDHWDMMSSDPLEPGTQAAQLVADIRKRKGLKEQM 877
            +G LA E + G    + D  LH DAIHRG  QVIP  R  ++ + + A  RLLEP+  V I  P + +G     +  +RG V ++M + G  L  ++   PV E  GFS  +R+AT G+A        + +M +D L+      +++ +IR+RKG+K ++
Sbjct:  570 DGPLAAEPVEGALIRLHDARLHEDAIHRGPAQVIPATRDAVHRALIDADIRLLEPIQDVRIDVPSEHMGAASGEVQGRRGRV-DDMYQEG-DLMVVEGIAPVDEMIGFSSDIRSATEGRASWNTENAGFRVM-ADNLQ-----REIIMEIRERKGMKTEL 721          
BLAST of CF831987 vs. ExPASy Swiss-Prot
Match: SN114_YEAST (114 kDa U5 small nuclear ribonucleoprotein component OS=Saccharomyces cerevisiae GN=SNU114 PE=1 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 6.268e-15
Identity = 55/172 (31.98%), Postives = 89/172 (51.74%), Query Frame = -2
Query:  410 EGALAEENMRGICFEVCDVVLHADA-IHRGGGQVIPTARRVIYASQLTAKPRLLEPVYMVEIQAPEQALGGIYSVLNQKRG-HVFEEMQRPGTPLYNIKAYLPVIESFGFSGTLRAATSGQAFPQCVFDH--W-----DMMSSDPLEPGTQAAQL-------VADIRKRKGL 877
            EG LAEE + G+ +++  + + +D  I     Q+IP  ++  Y   LTA P LLEP+Y V+I      L  +  ++ ++RG  +++ ++  GTPL  ++  +PVIES GF   LR +T+G    Q  F H  W     D++  D   P  + A +       V   R+RKG+
Sbjct:  805 EGPLAEEPIYGVQYKLLSISVPSDVNIDVMKSQIIPLMKKACYVGLLTAIPILLEPIYEVDITVHAPLLPIVEELMKKRRGSRIYKTIKVAGTPLLEVRGQVPVIESAGFETDLRLSTNGLGMCQLYFWHKIWRKVPGDVLDKDAFIPKLKPAPINSLSRDFVMKTRRRKGI 976          
The following BLAST results are available for this feature:
BLAST of CF831987 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 100
Match NameE-valueIdentityDescription
RIA1_YEAST8.746e-1732.43Ribosome assembly protein 1 OS=Saccharomyces cerev... [more]
EF2_THEGJ8.746e-1735.26Elongation factor 2 OS=Thermococcus gammatolerans ... [more]
EF2_METTH8.746e-1729.56Elongation factor 2 OS=Methanobacterium thermoauto... [more]
EF2_THEON1.492e-1634.39Elongation factor 2 OS=Thermococcus onnurineus (st... [more]
EF2_PYRHO1.492e-1633.76Elongation factor 2 OS=Pyrococcus horikoshii GN=fu... [more]
EF2_PYRAB1.492e-1633.76Elongation factor 2 OS=Pyrococcus abyssi GN=fusA P... [more]
EF2_THESM3.324e-1633.12Elongation factor 2 OS=Thermococcus sibiricus (str... [more]
EF2_HALSA3.324e-1634.38Elongation factor 2 OS=Halobacterium salinarium GN... [more]
EF2_HALS33.324e-1634.38Elongation factor 2 OS=Halobacterium salinarum (st... [more]
SN114_YEAST6.268e-1531.98114 kDa U5 small nuclear ribonucleoprotein compone... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_01C02_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01C02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF831987 ID=CF831987; Name=CF831987; organism=Citrus sinensis; type=EST; length=878bp
GGGCCCCTCTGTTCTAATATAATAATAATATATCAACCAACGTCGGCCAG
AATTAGTCCCTACACATGACAGAACATCAAACCTTAAAAGCTGTGAATTG
TAAAATTTAAAACCTAGATGACAGAGACAGGGTTACTAAACCCAATCAAC
AGTAATATTACTTTACTAAACACAATGAGGATATTGAAAAACTTTGAAAC
AAAAATAAGCATCAGCAAAAAATATTGCTGCGCAATCTCACCCTTGATGT
CAAGATGAAATGTTTACAGCTCGTCCTCTACTCGGATAGCGGTGTCATTT
GCTCCCTCTTCCTGATATCAGCAACAAGCTGCGCAATCTCACCCTTGATG
TCAAGACGAAATGTTTACAGCTTGTCCTCAAACTCAGATAGTGGTGTCAT
TTGCTCCTTCAAGCCCTTCCTCTTCCTGATATCAGCAACAAGCTGTGCAG
CCTGTGTACCAGGCTCCAGTGGATCGGATGACATCATGTCCCAGTGATCA
AACACACATTGTGGGAAGGCCTGTCCTGACGTTGCAGCCCTCAAAGTGCC
TGAGAATCCAAAGGACTCGATGACGGGAAGGTAAGCCTTGATGTTGTAAA
GGGGGGTACCAGGTCTCTGCATTTCCTCGAACACGTGACCACGTTTCTGA
TTGAGAACACTGTAAATACCACCAAGGGCCTGCTCGGGAGCCTGTATTTC
GACCATGTAGACAGGCTCAAGAAGCCTGGGCTTGGCTGTGAGCTGGGAAG
CATATATGACCCTCCTAGCAGTAGGAATGACTTGACCACCACCTCTGTGA
ATGGCATCAGCATGAAGAACAACATCACATACTTCAAAGCAGATACCTCT
CATGTTCTCTTCAGCCAGCGCACCTTCT
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