CF831988

Overview
NameCF831988
Unique NameCF831988
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length704
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF831988 vs. ExPASy Swiss-Prot
Match: EFG_WOLSU (Elongation factor G OS=Wolinella succinogenes GN=fusA PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.658e-14
Identity = 63/192 (32.81%), Postives = 106/192 (55.21%), Query Frame = 2
Query:   20 KQETVEDVPCGNTVAMVGLDQFITKNATLTNEKEVDAHPIRAMKFSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMV-VCTIEESGEHIVAGAGELHLEICLKDLQDDFMGGAEIIKSDPVVSFRETV---LEKSCR-TVMSKSPNKHNRLYMEARPLEEGLA-EAIDD--GRIGPRDDPKARSKILSE 571
            K+E ++++  G   A VGL + +T + TL +EKE     +  M+F   PV+ +AV+ K  +D  K+   L +LA+ DP   V + EE+G+ I++G GELHLEI +  ++ +F   AE+    P V+FRETV   + K C+    S    ++  ++++  P E G   E ++D  G + P++   A  K + E
Sbjct:  363 KREDIKEIYAGEICAFVGLKETLTGD-TLCSEKEPVI--LERMEFP-EPVISIAVEPKTKADQEKMGIALNKLAEEDPSFRVNSDEETGQTIISGMGELHLEIIVDRMKREFKVEAEV--GQPQVAFRETVRKAVNKECKYAKQSGGRGQYGHVFIKLEPQEAGKGYEFVNDISGGVIPKEYIPAVDKGIKE 548          
BLAST of CF831988 vs. ExPASy Swiss-Prot
Match: EFG_LACF3 (Elongation factor G OS=Lactobacillus fermentum (strain IFO 3956 / LMG 18251) GN=fusA PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 3.694e-14
Identity = 57/177 (32.20%), Postives = 94/177 (53.11%), Query Frame = 2
Query:   20 KQETVEDVPCGNTVAMVGLDQFITKNATLTNEKEVDAHPIR--AMKFSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMVVC-TIEESGEHIVAGAGELHLEICLKDLQDDFMGGAEIIKSDPVVSFRET----VLEKSCRTVMSKSPNKHNRLYMEARPLEEGLAEAIDDGRIG 529
            +Q  + +V  G+  A +GL     KN T  +      HP++  +M F   PV++V+V+ K  +D  K+ +GL++LA+ DP     T  E+GE ++AG GELHL+I ++ L+ +F   AE+    P VS+RE     V  +      S    ++  +++E  PLEEG     +D  +G
Sbjct:  363 QQNEISEVFSGDIAAAIGL-----KNTTTGDSLTDPDHPLQLESMDFP-EPVIQVSVEPKSKADQDKMDKGLQKLAEEDPTFKAETNPETGETLIAGMGELHLDIIVERLRREF--NAEVTVGKPQVSYREAFTKQVSAQGKFVRQSGGKGQYGDVWIEFTPLEEGAGFEFEDAIVG 531          
BLAST of CF831988 vs. ExPASy Swiss-Prot
Match: EFG_ACIB3 (Elongation factor G OS=Acinetobacter baumannii (strain AB307-0294) GN=fusA PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 3.694e-14
Identity = 55/162 (33.95%), Postives = 92/162 (56.79%), Query Frame = 2
Query:   20 KQETVEDVPCGNTVAMVGLDQFITKNATLTNEKEVDAHPIRAMKFSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMV-VCTIEESGEHIVAGAGELHLEICLKDLQDDFMGGAEIIKSDPVVSFRETV---LEKSCRTV-MSKSPNKHNRLYMEARPLE 490
            +++ ++++  G+  A VGL   +T   TL +EK +    +  M+F   PV+++AV+ K  +D  K+   L RLAK DP   V T EESG+ I+AG GELHL+I +  ++ +F  G E     P+V++RET+   +E+  + V  +    K   +Y+   PL+
Sbjct:  370 ERQDIDEIRAGDIAACVGLKD-VTTGDTLCDEKNIIT--LERMEFP-DPVIQLAVEPKTKADQEKMSIALGRLAKEDPSFRVHTDEESGQTIIAGMGELHLDIIVDRMKREF--GVEANIGKPMVAYRETIKKTVEQEGKLVRQTGGKGKFGHVYVRLEPLD 525          
BLAST of CF831988 vs. ExPASy Swiss-Prot
Match: EFG_HELHP (Elongation factor G OS=Helicobacter hepaticus GN=fusA PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 4.825e-14
Identity = 55/164 (33.54%), Postives = 91/164 (55.49%), Query Frame = 2
Query:   20 KQETVEDVPCGNTVAMVGLDQFITKNATLTNEKEVDAHPIRAMKFSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMV-VCTIEESGEHIVAGAGELHLEICLKDLQDDFMGGAEIIKSDPVVSFRETV---LEKSCR-TVMSKSPNKHNRLYMEARPLEEG 496
            K+E ++++  G   A VGL   +T + TL +EK      +  M F   PV+++AV+ K  +D  K+   L +LA+ DP   V T EE+G+ ++ G GELHLEI +  L+ +F   AE+   +P V+FRET+   +E+ C+    S    ++  +++   P E G
Sbjct:  362 KREDIKEIYAGEICAFVGLKDTVTGD-TLCDEKVPVI--LERMDFP-EPVIQIAVEPKTKADQEKMSIALSKLAEEDPSFRVSTHEETGQTLIGGMGELHLEIIVDRLKREFKVEAEV--GEPQVAFRETIRTAVEQECKYAKQSGGRGQYGHVHIRLEPKEAG 519          
BLAST of CF831988 vs. ExPASy Swiss-Prot
Match: EFG_ACIBY (Elongation factor G OS=Acinetobacter baumannii (strain AYE) GN=fusA PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 4.825e-14
Identity = 55/162 (33.95%), Postives = 92/162 (56.79%), Query Frame = 2
Query:   20 KQETVEDVPCGNTVAMVGLDQFITKNATLTNEKEVDAHPIRAMKFSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMV-VCTIEESGEHIVAGAGELHLEICLKDLQDDFMGGAEIIKSDPVVSFRETV---LEKSCRTV-MSKSPNKHNRLYMEARPLE 490
            +++ ++++  G+  A VGL   +T   TL +EK +    +  M+F   PV+++AV+ K  +D  K+   L RLAK DP   V T EESG+ I+AG GELHL+I +  ++ +F  G E     P+V++RET+   +E+  + V  +    K   +Y+   PL+
Sbjct:  370 ERQDIDEIRAGDIAACVGLKD-VTTGDTLCDEKNIIT--LERMEFP-DPVIQLAVEPKTKADQEKMSIALGRLAKEDPSFRVHTDEESGQTIIAGMGELHLDIIVDRMKREF--GVEANIGKPMVAYRETIKKTVEQEGKFVRQTGGKGKFGHVYVRLEPLD 525          
BLAST of CF831988 vs. ExPASy Swiss-Prot
Match: EFG_ACIBT (Elongation factor G OS=Acinetobacter baumannii (strain ATCC 17978 / NCDC KC 755) GN=fusA PE=3 SV=2)

HSP 1 Score: 78.1814 bits (191), Expect = 4.825e-14
Identity = 55/162 (33.95%), Postives = 92/162 (56.79%), Query Frame = 2
Query:   20 KQETVEDVPCGNTVAMVGLDQFITKNATLTNEKEVDAHPIRAMKFSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMV-VCTIEESGEHIVAGAGELHLEICLKDLQDDFMGGAEIIKSDPVVSFRETV---LEKSCRTV-MSKSPNKHNRLYMEARPLE 490
            +++ ++++  G+  A VGL   +T   TL +EK +    +  M+F   PV+++AV+ K  +D  K+   L RLAK DP   V T EESG+ I+AG GELHL+I +  ++ +F  G E     P+V++RET+   +E+  + V  +    K   +Y+   PL+
Sbjct:  370 ERQDIDEIRAGDIAACVGLKD-VTTGDTLCDEKNIIT--LERMEFP-DPVIQLAVEPKTKADQEKMSIALGRLAKEDPSFRVHTDEESGQTIIAGMGELHLDIIVDRMKREF--GVEANIGKPMVAYRETIKKTVEQEGKFVRQTGGKGKFGHVYVRLEPLD 525          
BLAST of CF831988 vs. ExPASy Swiss-Prot
Match: EFG_ACIBS (Elongation factor G OS=Acinetobacter baumannii (strain SDF) GN=fusA PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 4.825e-14
Identity = 55/162 (33.95%), Postives = 92/162 (56.79%), Query Frame = 2
Query:   20 KQETVEDVPCGNTVAMVGLDQFITKNATLTNEKEVDAHPIRAMKFSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMV-VCTIEESGEHIVAGAGELHLEICLKDLQDDFMGGAEIIKSDPVVSFRETV---LEKSCRTV-MSKSPNKHNRLYMEARPLE 490
            +++ ++++  G+  A VGL   +T   TL +EK +    +  M+F   PV+++AV+ K  +D  K+   L RLAK DP   V T EESG+ I+AG GELHL+I +  ++ +F  G E     P+V++RET+   +E+  + V  +    K   +Y+   PL+
Sbjct:  370 ERQDIDEIRAGDIAACVGLKD-VTTGDTLCDEKNIIT--LERMEFP-DPVIQLAVEPKTKADQEKMSIALGRLAKEDPSFRVHTDEESGQTIIAGMGELHLDIIVDRMKREF--GVEANIGKPMVAYRETIKKTVEQEGKFVRQTGGKGKFGHVYVRLEPLD 525          
BLAST of CF831988 vs. ExPASy Swiss-Prot
Match: EFG_ACIBC (Elongation factor G OS=Acinetobacter baumannii (strain ACICU) GN=fusA PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 4.825e-14
Identity = 55/162 (33.95%), Postives = 92/162 (56.79%), Query Frame = 2
Query:   20 KQETVEDVPCGNTVAMVGLDQFITKNATLTNEKEVDAHPIRAMKFSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMV-VCTIEESGEHIVAGAGELHLEICLKDLQDDFMGGAEIIKSDPVVSFRETV---LEKSCRTV-MSKSPNKHNRLYMEARPLE 490
            +++ ++++  G+  A VGL   +T   TL +EK +    +  M+F   PV+++AV+ K  +D  K+   L RLAK DP   V T EESG+ I+AG GELHL+I +  ++ +F  G E     P+V++RET+   +E+  + V  +    K   +Y+   PL+
Sbjct:  370 ERQDIDEIRAGDIAACVGLKD-VTTGDTLCDEKNIIT--LERMEFP-DPVIQLAVEPKTKADQEKMSIALGRLAKEDPSFRVHTDEESGQTIIAGMGELHLDIIVDRMKREF--GVEANIGKPMVAYRETIKKTVEQEGKFVRQTGGKGKFGHVYVRLEPLD 525          
BLAST of CF831988 vs. ExPASy Swiss-Prot
Match: EFG_ACIB5 (Elongation factor G OS=Acinetobacter baumannii (strain AB0057) GN=fusA PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 4.825e-14
Identity = 55/162 (33.95%), Postives = 92/162 (56.79%), Query Frame = 2
Query:   20 KQETVEDVPCGNTVAMVGLDQFITKNATLTNEKEVDAHPIRAMKFSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMV-VCTIEESGEHIVAGAGELHLEICLKDLQDDFMGGAEIIKSDPVVSFRETV---LEKSCRTV-MSKSPNKHNRLYMEARPLE 490
            +++ ++++  G+  A VGL   +T   TL +EK +    +  M+F   PV+++AV+ K  +D  K+   L RLAK DP   V T EESG+ I+AG GELHL+I +  ++ +F  G E     P+V++RET+   +E+  + V  +    K   +Y+   PL+
Sbjct:  370 ERQDIDEIRAGDIAACVGLKD-VTTGDTLCDEKNIIT--LERMEFP-DPVIQLAVEPKTKADQEKMSIALGRLAKEDPSFRVHTDEESGQTIIAGMGELHLDIIVDRMKREF--GVEANIGKPMVAYRETIKKTVEQEGKFVRQTGGKGKFGHVYVRLEPLD 525          
BLAST of CF831988 vs. ExPASy Swiss-Prot
Match: EFG_NITSB (Elongation factor G OS=Nitratiruptor sp. (strain SB155-2) GN=fusA PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 6.302e-14
Identity = 50/132 (37.88%), Postives = 79/132 (59.85%), Query Frame = 2
Query:   20 KQETVEDVPCGNTVAMVGLDQFITKNATLTNEKEVDAHPIRAMKFSV-SPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMV-VCTIEESGEHIVAGAGELHLEICLKDLQDDFMGGAEIIKSDPVVSFRETV 409
            K+E ++++P G   A+VGL   +T + TL +E    +HP+   K     PV+ VAV+ K  +D  K+   L +LA+ DP   V T EE+G+ I++G GELHLEI +  ++ +F   AE+    P V++RET+
Sbjct:  362 KREEIKELPAGEIGAVVGLKYTLTGD-TLCDE----SHPVILEKMEFPEPVISVAVEPKTKADQEKMATALAKLAEEDPSFRVHTDEETGQTIISGMGELHLEIIVDRMKREFKVDAEV--GQPQVAYRETI 486          
The following BLAST results are available for this feature:
BLAST of CF831988 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 409
Match NameE-valueIdentityDescription
EFG_WOLSU1.658e-1432.81Elongation factor G OS=Wolinella succinogenes GN=f... [more]
EFG_LACF33.694e-1432.20Elongation factor G OS=Lactobacillus fermentum (st... [more]
EFG_ACIB33.694e-1433.95Elongation factor G OS=Acinetobacter baumannii (st... [more]
EFG_HELHP4.825e-1433.54Elongation factor G OS=Helicobacter hepaticus GN=f... [more]
EFG_ACIBY4.825e-1433.95Elongation factor G OS=Acinetobacter baumannii (st... [more]
EFG_ACIBT4.825e-1433.95Elongation factor G OS=Acinetobacter baumannii (st... [more]
EFG_ACIBS4.825e-1433.95Elongation factor G OS=Acinetobacter baumannii (st... [more]
EFG_ACIBC4.825e-1433.95Elongation factor G OS=Acinetobacter baumannii (st... [more]
EFG_ACIB54.825e-1433.95Elongation factor G OS=Acinetobacter baumannii (st... [more]
EFG_NITSB6.302e-1437.88Elongation factor G OS=Nitratiruptor sp. (strain S... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS02_01C02_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01C02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF831988 ID=CF831988; Name=CF831988; organism=Citrus sinensis; type=EST; length=704bp
CCGTATTTGGATGGGAAAGAAGCAGGAAACCGTTGAGGATGTGCCTTGTG
GTAACACTGTGGCTATGGTTGGTCTCGATCAATTCATCACTAAAAATGCT
ACCTTGACTAATGAGAAGGAAGTTGATGCCCATCCCATCCGTGCTATGAA
GTTCTCTGTCTCACCTGTTGTTCGTGTGGCTGTCCAGTGCAAAGTCGCTT
CTGATCTCCCTAAGCTTGTTGAAGGTCTTAAGCGTTTGGCCAAGTCAGAT
CCTATGGTTGTCTGTACAATTGAGGAGTCTGGCGAGCACATTGTTGCTGG
TGCGGGAGAACTTCACCTTGAGATCTGTTTGAAGGATCTGCAGGACGATT
TCATGGGAGGTGCTGAAATTATTAAATCTGATCCTGTTGTGTCCTTCCGT
GAAACTGTCCTTGAGAAGTCTTGCCGCACTGTGATGAGTAAGTCTCCCAA
CAAGCATAATCGTCTCTACATGGAAGCCCGACCTCTGGAAGAAGGTCTTG
CTGAGGCCATAGATGATGGCCGCATTGGTCCAAGGGATGATCCCAAGGCT
CGATCTAAGATCTTGTCTGAGGAGTTCGGCTGGGACAAGGATCTTGCGAA
GAAGATTTGGTGTTTTGGTCCTGAGACCACTGGCCCTAACATGTTCGTTG
ATATGTGTAAGGGAGTTCAATACTTGAATGAAATTAAGGATTCTGTTGTT
GCTG
back to top