CF831988

Overview
NameCF831988
Unique NameCF831988
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length704
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF831988 vs. ExPASy Swiss-Prot
Match: EFG_CAMFF (Elongation factor G OS=Campylobacter fetus subsp. fetus (strain 82-40) GN=fusA PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 6.302e-14
Identity = 63/182 (34.62%), Postives = 97/182 (53.30%), Query Frame = 2
Query:   20 KQETVEDVPCGNTVAMVGLDQFITKNATLTNEKEVDAHPIRAMKFSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMV-VCTIEESGEHIVAGAGELHLEICLKDLQDDFMGGAEIIKSDPVVSFRETVLEKSCR-----TVMSKSPNKHNRLYMEARPLEEGLA-EAIDD--GRIGPRD 538
            K+E ++ +  G   A+VGL   +T + TL  EKE   H I        PV+ VAV+ K  +D  K+   L++LA+ DP   V T EESG+ I++G GELHLEI +  +  +F   AE+    P V++RET+ +KS          S    ++  +++   PLE G   E ++D  G + PR+
Sbjct:  361 KREEIKVLYAGEIGAVVGLKDTLTGD-TLAGEKE---HVILEKMDFPDPVISVAVEPKTKADQEKMGIALQKLAQEDPSFRVSTDEESGQTIISGMGELHLEIIVDRMLREFKVEAEV--GQPQVAYRETI-KKSVEQEYKYAKQSGGRGQYGHVFLRLEPLEPGSGFEFVNDIKGGVVPRE 535          
BLAST of CF831988 vs. ExPASy Swiss-Prot
Match: EFG_HELPY (Elongation factor G OS=Helicobacter pylori GN=fusA PE=3 SV=2)

HSP 1 Score: 77.411 bits (189), Expect = 8.230e-14
Identity = 56/164 (34.15%), Postives = 89/164 (54.27%), Query Frame = 2
Query:   20 KQETVEDVPCGNTVAMVGLDQFITKNATLTNEKEVDAHPIRAMKFSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMV-VCTIEESGEHIVAGAGELHLEICLKDLQDDFMGGAEIIKSDPVVSFRETVLEKSCR----TVMSKSPNKHNRLYMEARPLEEG 496
            K+E +++V  G   A VGL   +T + TL +EK  +A  +  M+F   PV+ +AV+ K  +D  K+   L +LA+ DP   V T EE+G+ ++ G GELHLEI +  L+ +F   AEI    P V+FRET+     +       S    ++  ++++  P E G
Sbjct:  362 KREDIKEVYAGEICAFVGLKDTLTGD-TLCDEK--NAVVLERMEFP-EPVIHIAVEPKTKADQEKMGVALGKLAEEDPSFRVMTQEETGQTLIGGMGELHLEIIVDRLKREFKVEAEI--GQPQVAFRETIRSSVSKEHKYAKQSGGRGQYGHVFIKLEPKEPG 519          
BLAST of CF831988 vs. ExPASy Swiss-Prot
Match: EFG_HELPS (Elongation factor G OS=Helicobacter pylori (strain Shi470) GN=fusA PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 8.230e-14
Identity = 56/164 (34.15%), Postives = 89/164 (54.27%), Query Frame = 2
Query:   20 KQETVEDVPCGNTVAMVGLDQFITKNATLTNEKEVDAHPIRAMKFSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMV-VCTIEESGEHIVAGAGELHLEICLKDLQDDFMGGAEIIKSDPVVSFRETVLEKSCR----TVMSKSPNKHNRLYMEARPLEEG 496
            K+E +++V  G   A VGL   +T + TL +EK  +A  +  M+F   PV+ +AV+ K  +D  K+   L +LA+ DP   V T EE+G+ ++ G GELHLEI +  L+ +F   AEI    P V+FRET+     +       S    ++  ++++  P E G
Sbjct:  362 KREDIKEVYAGEICAFVGLKDTLTGD-TLCDEK--NAVVLERMEFP-EPVIHIAVEPKTKADQEKMGVALGKLAEEDPSFRVMTQEETGQTLIGGMGELHLEIIVDRLKREFKVEAEI--GQPQVAFRETIRSSVSKEHKYAKQSGGRGQYGHVFIKLEPKEPG 519          
BLAST of CF831988 vs. ExPASy Swiss-Prot
Match: EFG_HELPJ (Elongation factor G OS=Helicobacter pylori J99 GN=fusA PE=3 SV=3)

HSP 1 Score: 77.411 bits (189), Expect = 8.230e-14
Identity = 56/164 (34.15%), Postives = 89/164 (54.27%), Query Frame = 2
Query:   20 KQETVEDVPCGNTVAMVGLDQFITKNATLTNEKEVDAHPIRAMKFSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMV-VCTIEESGEHIVAGAGELHLEICLKDLQDDFMGGAEIIKSDPVVSFRETVLEKSCR----TVMSKSPNKHNRLYMEARPLEEG 496
            K+E +++V  G   A VGL   +T + TL +EK  +A  +  M+F   PV+ +AV+ K  +D  K+   L +LA+ DP   V T EE+G+ ++ G GELHLEI +  L+ +F   AEI    P V+FRET+     +       S    ++  ++++  P E G
Sbjct:  362 KREDIKEVYAGEICAFVGLKDTLTGD-TLCDEK--NAVVLERMEFP-EPVIHIAVEPKTKADQEKMGVALGKLAEEDPSFRVMTQEETGQTLIGGMGELHLEIIVDRLKREFKVEAEI--GQPQVAFRETIRSSVSKEHKYAKQSGGRGQYGHVFIKLEPKEPG 519          
BLAST of CF831988 vs. ExPASy Swiss-Prot
Match: EFG_HELPH (Elongation factor G OS=Helicobacter pylori (strain HPAG1) GN=fusA PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 8.230e-14
Identity = 56/164 (34.15%), Postives = 89/164 (54.27%), Query Frame = 2
Query:   20 KQETVEDVPCGNTVAMVGLDQFITKNATLTNEKEVDAHPIRAMKFSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMV-VCTIEESGEHIVAGAGELHLEICLKDLQDDFMGGAEIIKSDPVVSFRETVLEKSCR----TVMSKSPNKHNRLYMEARPLEEG 496
            K+E +++V  G   A VGL   +T + TL +EK  +A  +  M+F   PV+ +AV+ K  +D  K+   L +LA+ DP   V T EE+G+ ++ G GELHLEI +  L+ +F   AEI    P V+FRET+     +       S    ++  ++++  P E G
Sbjct:  362 KREDIKEVYAGEICAFVGLKDTLTGD-TLCDEK--NAVVLERMEFP-EPVIHIAVEPKTKADQEKMGVALGKLAEEDPSFRVMTQEETGQTLIGGMGELHLEIIVDRLKREFKVEAEI--GQPQVAFRETIRSSVSKEHKYAKQSGGRGQYGHVFIKLEPKEPG 519          
BLAST of CF831988 vs. ExPASy Swiss-Prot
Match: EFG_HELPG (Elongation factor G OS=Helicobacter pylori (strain G27) GN=fusA PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 8.230e-14
Identity = 56/164 (34.15%), Postives = 89/164 (54.27%), Query Frame = 2
Query:   20 KQETVEDVPCGNTVAMVGLDQFITKNATLTNEKEVDAHPIRAMKFSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMV-VCTIEESGEHIVAGAGELHLEICLKDLQDDFMGGAEIIKSDPVVSFRETVLEKSCR----TVMSKSPNKHNRLYMEARPLEEG 496
            K+E +++V  G   A VGL   +T + TL +EK  +A  +  M+F   PV+ +AV+ K  +D  K+   L +LA+ DP   V T EE+G+ ++ G GELHLEI +  L+ +F   AEI    P V+FRET+     +       S    ++  ++++  P E G
Sbjct:  362 KREDIKEVYAGEICAFVGLKDTLTGD-TLCDEK--NAIVLERMEFP-EPVIHIAVEPKTKADQEKMGVALGKLAEEDPSFRVMTQEETGQTLIGGMGELHLEIIVDRLKREFKVEAEI--GQPQVAFRETIRSSVSKEHKYAKQSGGRGQYGHVFIKLEPKEPG 519          
BLAST of CF831988 vs. ExPASy Swiss-Prot
Match: EFG_HELP2 (Elongation factor G OS=Helicobacter pylori (strain P12) GN=fusA PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 8.230e-14
Identity = 56/164 (34.15%), Postives = 89/164 (54.27%), Query Frame = 2
Query:   20 KQETVEDVPCGNTVAMVGLDQFITKNATLTNEKEVDAHPIRAMKFSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMV-VCTIEESGEHIVAGAGELHLEICLKDLQDDFMGGAEIIKSDPVVSFRETVLEKSCR----TVMSKSPNKHNRLYMEARPLEEG 496
            K+E +++V  G   A VGL   +T + TL +EK  +A  +  M+F   PV+ +AV+ K  +D  K+   L +LA+ DP   V T EE+G+ ++ G GELHLEI +  L+ +F   AEI    P V+FRET+     +       S    ++  ++++  P E G
Sbjct:  362 KREDIKEVYAGEICAFVGLKDTLTGD-TLCDEK--NAVVLERMEFP-EPVIHIAVEPKTKADQEKMGVALGKLAEEDPSFRVMTQEETGQTLIGGMGELHLEIIVDRLKREFKVEAEI--GQPQVAFRETIRSSVSKEHKYAKQSGGRGQYGHVFIKLEPKEPG 519          
BLAST of CF831988 vs. ExPASy Swiss-Prot
Match: EFG_HELAH (Elongation factor G OS=Helicobacter acinonychis (strain Sheeba) GN=fusA PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 8.230e-14
Identity = 56/164 (34.15%), Postives = 89/164 (54.27%), Query Frame = 2
Query:   20 KQETVEDVPCGNTVAMVGLDQFITKNATLTNEKEVDAHPIRAMKFSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMV-VCTIEESGEHIVAGAGELHLEICLKDLQDDFMGGAEIIKSDPVVSFRETVLEKSCR----TVMSKSPNKHNRLYMEARPLEEG 496
            K+E +++V  G   A VGL   +T + TL +EK  +A  +  M+F   PV+ +AV+ K  +D  K+   L +LA+ DP   V T EE+G+ ++ G GELHLEI +  L+ +F   AEI    P V+FRET+     +       S    ++  ++++  P E G
Sbjct:  362 KREDIKEVYAGEICAFVGLKDTLTGD-TLCDEK--NAVVLERMEFP-EPVIHIAVEPKTKADQEKMGVALGKLAEEDPSFRVMTQEETGQTLIGGMGELHLEIIVDRLKREFKVEAEI--GQPQVAFRETIRSSVSKEHKYAKQSGGRGQYGHVFIKLEPKEPG 519          
BLAST of CF831988 vs. ExPASy Swiss-Prot
Match: EFG_CHLCH (Elongation factor G OS=Chlorobium chlorochromatii (strain CaD3) GN=fusA PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 8.230e-14
Identity = 66/183 (36.07%), Postives = 99/183 (54.10%), Query Frame = 2
Query:   20 KQETVEDVPCGNTVAMVGLDQFITKNATLTNEKEVDAHPIRAMKFSV-SPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMV-VCTIEESGEHIVAGAGELHLEICLKDLQDDFMGGAEIIKSDPVVSFRETV---LEKSCRTV-MSKSPNKHNRLYMEARPLEEG----LAEAIDDGRIGPRD 538
            K+E +E V CG+  A VGL    T + TL +E     +P+   K     PV+++A++ K  SD  KL   L +LA+ DP   V T EE+G+ ++AG GELHLEI +  L+ +F   A + K  P V++RET+   +E   + V  S    +   + ++  PLEEG      +AI  G I PR+
Sbjct:  370 KREDIEAVYCGDIAAAVGLKDVKTGD-TLCDEN----NPVVLEKMVFPEPVIQIAIEPKTKSDSDKLGMSLAKLAEEDPTFKVKTDEETGQTLIAGMGELHLEILVDRLRREFKVDANVGK--PQVAYRETIRKSVEFEGKFVRQSGGKGQFGLVNLKVEPLEEGKGYEFVDAIKGGVI-PRE 544          
BLAST of CF831988 vs. ExPASy Swiss-Prot
Match: EFG_CAMHC (Elongation factor G OS=Campylobacter hominis (strain ATCC BAA-381 / LMG 19568 / NCTC 13146 / CH001A) GN=fusA PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 8.230e-14
Identity = 57/164 (34.76%), Postives = 94/164 (57.32%), Query Frame = 2
Query:   20 KQETVEDVPCGNTVAMVGLDQFITKNATLTNEKEVDAHPIRAMKFSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMV-VCTIEESGEHIVAGAGELHLEICLKDLQDDFMGGAEIIKSDPVVSFRETV---LEKSCR-TVMSKSPNKHNRLYMEARPLEEG 496
            K+E ++++  G   A+VGL   +T + TL +EK  D   +  M+F   PV+ VAV+ K  +D  K+   L++LA+ DP   V T EESG+ I++G GELHLEI +  +  +F   AE+ K  P V++RET+   +E+  +    S    ++  +++   P+E G
Sbjct:  360 KREEIKELYAGEIGAVVGLKDTLTGD-TLASEK--DPVILERMEFP-DPVISVAVEPKTKADQEKMGIALQKLAQEDPSFRVATDEESGQTIISGMGELHLEIIVDRMLREFKVEAEVGK--PQVAYRETIRKTVEQEYKYAKQSGGRGQYGHVFLRLEPMEPG 517          
The following BLAST results are available for this feature:
BLAST of CF831988 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 409
Match NameE-valueIdentityDescription
EFG_CAMFF6.302e-1434.62Elongation factor G OS=Campylobacter fetus subsp. ... [more]
EFG_HELPY8.230e-1434.15Elongation factor G OS=Helicobacter pylori GN=fusA... [more]
EFG_HELPS8.230e-1434.15Elongation factor G OS=Helicobacter pylori (strain... [more]
EFG_HELPJ8.230e-1434.15Elongation factor G OS=Helicobacter pylori J99 GN=... [more]
EFG_HELPH8.230e-1434.15Elongation factor G OS=Helicobacter pylori (strain... [more]
EFG_HELPG8.230e-1434.15Elongation factor G OS=Helicobacter pylori (strain... [more]
EFG_HELP28.230e-1434.15Elongation factor G OS=Helicobacter pylori (strain... [more]
EFG_HELAH8.230e-1434.15Elongation factor G OS=Helicobacter acinonychis (s... [more]
EFG_CHLCH8.230e-1436.07Elongation factor G OS=Chlorobium chlorochromatii ... [more]
EFG_CAMHC8.230e-1434.76Elongation factor G OS=Campylobacter hominis (stra... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_01C02_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01C02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF831988 ID=CF831988; Name=CF831988; organism=Citrus sinensis; type=EST; length=704bp
CCGTATTTGGATGGGAAAGAAGCAGGAAACCGTTGAGGATGTGCCTTGTG
GTAACACTGTGGCTATGGTTGGTCTCGATCAATTCATCACTAAAAATGCT
ACCTTGACTAATGAGAAGGAAGTTGATGCCCATCCCATCCGTGCTATGAA
GTTCTCTGTCTCACCTGTTGTTCGTGTGGCTGTCCAGTGCAAAGTCGCTT
CTGATCTCCCTAAGCTTGTTGAAGGTCTTAAGCGTTTGGCCAAGTCAGAT
CCTATGGTTGTCTGTACAATTGAGGAGTCTGGCGAGCACATTGTTGCTGG
TGCGGGAGAACTTCACCTTGAGATCTGTTTGAAGGATCTGCAGGACGATT
TCATGGGAGGTGCTGAAATTATTAAATCTGATCCTGTTGTGTCCTTCCGT
GAAACTGTCCTTGAGAAGTCTTGCCGCACTGTGATGAGTAAGTCTCCCAA
CAAGCATAATCGTCTCTACATGGAAGCCCGACCTCTGGAAGAAGGTCTTG
CTGAGGCCATAGATGATGGCCGCATTGGTCCAAGGGATGATCCCAAGGCT
CGATCTAAGATCTTGTCTGAGGAGTTCGGCTGGGACAAGGATCTTGCGAA
GAAGATTTGGTGTTTTGGTCCTGAGACCACTGGCCCTAACATGTTCGTTG
ATATGTGTAAGGGAGTTCAATACTTGAATGAAATTAAGGATTCTGTTGTT
GCTG
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