CF831988
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF831988 vs. ExPASy Swiss-Prot
Match: EFG_CAMFF (Elongation factor G OS=Campylobacter fetus subsp. fetus (strain 82-40) GN=fusA PE=3 SV=1) HSP 1 Score: 77.7962 bits (190), Expect = 6.302e-14 Identity = 63/182 (34.62%), Postives = 97/182 (53.30%), Query Frame = 2 Query: 20 KQETVEDVPCGNTVAMVGLDQFITKNATLTNEKEVDAHPIRAMKFSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMV-VCTIEESGEHIVAGAGELHLEICLKDLQDDFMGGAEIIKSDPVVSFRETVLEKSCR-----TVMSKSPNKHNRLYMEARPLEEGLA-EAIDD--GRIGPRD 538 K+E ++ + G A+VGL +T + TL EKE H I PV+ VAV+ K +D K+ L++LA+ DP V T EESG+ I++G GELHLEI + + +F AE+ P V++RET+ +KS S ++ +++ PLE G E ++D G + PR+ Sbjct: 361 KREEIKVLYAGEIGAVVGLKDTLTGD-TLAGEKE---HVILEKMDFPDPVISVAVEPKTKADQEKMGIALQKLAQEDPSFRVSTDEESGQTIISGMGELHLEIIVDRMLREFKVEAEV--GQPQVAYRETI-KKSVEQEYKYAKQSGGRGQYGHVFLRLEPLEPGSGFEFVNDIKGGVVPRE 535
BLAST of CF831988 vs. ExPASy Swiss-Prot
Match: EFG_HELPY (Elongation factor G OS=Helicobacter pylori GN=fusA PE=3 SV=2) HSP 1 Score: 77.411 bits (189), Expect = 8.230e-14 Identity = 56/164 (34.15%), Postives = 89/164 (54.27%), Query Frame = 2 Query: 20 KQETVEDVPCGNTVAMVGLDQFITKNATLTNEKEVDAHPIRAMKFSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMV-VCTIEESGEHIVAGAGELHLEICLKDLQDDFMGGAEIIKSDPVVSFRETVLEKSCR----TVMSKSPNKHNRLYMEARPLEEG 496 K+E +++V G A VGL +T + TL +EK +A + M+F PV+ +AV+ K +D K+ L +LA+ DP V T EE+G+ ++ G GELHLEI + L+ +F AEI P V+FRET+ + S ++ ++++ P E G Sbjct: 362 KREDIKEVYAGEICAFVGLKDTLTGD-TLCDEK--NAVVLERMEFP-EPVIHIAVEPKTKADQEKMGVALGKLAEEDPSFRVMTQEETGQTLIGGMGELHLEIIVDRLKREFKVEAEI--GQPQVAFRETIRSSVSKEHKYAKQSGGRGQYGHVFIKLEPKEPG 519
BLAST of CF831988 vs. ExPASy Swiss-Prot
Match: EFG_HELPS (Elongation factor G OS=Helicobacter pylori (strain Shi470) GN=fusA PE=3 SV=1) HSP 1 Score: 77.411 bits (189), Expect = 8.230e-14 Identity = 56/164 (34.15%), Postives = 89/164 (54.27%), Query Frame = 2 Query: 20 KQETVEDVPCGNTVAMVGLDQFITKNATLTNEKEVDAHPIRAMKFSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMV-VCTIEESGEHIVAGAGELHLEICLKDLQDDFMGGAEIIKSDPVVSFRETVLEKSCR----TVMSKSPNKHNRLYMEARPLEEG 496 K+E +++V G A VGL +T + TL +EK +A + M+F PV+ +AV+ K +D K+ L +LA+ DP V T EE+G+ ++ G GELHLEI + L+ +F AEI P V+FRET+ + S ++ ++++ P E G Sbjct: 362 KREDIKEVYAGEICAFVGLKDTLTGD-TLCDEK--NAVVLERMEFP-EPVIHIAVEPKTKADQEKMGVALGKLAEEDPSFRVMTQEETGQTLIGGMGELHLEIIVDRLKREFKVEAEI--GQPQVAFRETIRSSVSKEHKYAKQSGGRGQYGHVFIKLEPKEPG 519
BLAST of CF831988 vs. ExPASy Swiss-Prot
Match: EFG_HELPJ (Elongation factor G OS=Helicobacter pylori J99 GN=fusA PE=3 SV=3) HSP 1 Score: 77.411 bits (189), Expect = 8.230e-14 Identity = 56/164 (34.15%), Postives = 89/164 (54.27%), Query Frame = 2 Query: 20 KQETVEDVPCGNTVAMVGLDQFITKNATLTNEKEVDAHPIRAMKFSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMV-VCTIEESGEHIVAGAGELHLEICLKDLQDDFMGGAEIIKSDPVVSFRETVLEKSCR----TVMSKSPNKHNRLYMEARPLEEG 496 K+E +++V G A VGL +T + TL +EK +A + M+F PV+ +AV+ K +D K+ L +LA+ DP V T EE+G+ ++ G GELHLEI + L+ +F AEI P V+FRET+ + S ++ ++++ P E G Sbjct: 362 KREDIKEVYAGEICAFVGLKDTLTGD-TLCDEK--NAVVLERMEFP-EPVIHIAVEPKTKADQEKMGVALGKLAEEDPSFRVMTQEETGQTLIGGMGELHLEIIVDRLKREFKVEAEI--GQPQVAFRETIRSSVSKEHKYAKQSGGRGQYGHVFIKLEPKEPG 519
BLAST of CF831988 vs. ExPASy Swiss-Prot
Match: EFG_HELPH (Elongation factor G OS=Helicobacter pylori (strain HPAG1) GN=fusA PE=3 SV=1) HSP 1 Score: 77.411 bits (189), Expect = 8.230e-14 Identity = 56/164 (34.15%), Postives = 89/164 (54.27%), Query Frame = 2 Query: 20 KQETVEDVPCGNTVAMVGLDQFITKNATLTNEKEVDAHPIRAMKFSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMV-VCTIEESGEHIVAGAGELHLEICLKDLQDDFMGGAEIIKSDPVVSFRETVLEKSCR----TVMSKSPNKHNRLYMEARPLEEG 496 K+E +++V G A VGL +T + TL +EK +A + M+F PV+ +AV+ K +D K+ L +LA+ DP V T EE+G+ ++ G GELHLEI + L+ +F AEI P V+FRET+ + S ++ ++++ P E G Sbjct: 362 KREDIKEVYAGEICAFVGLKDTLTGD-TLCDEK--NAVVLERMEFP-EPVIHIAVEPKTKADQEKMGVALGKLAEEDPSFRVMTQEETGQTLIGGMGELHLEIIVDRLKREFKVEAEI--GQPQVAFRETIRSSVSKEHKYAKQSGGRGQYGHVFIKLEPKEPG 519
BLAST of CF831988 vs. ExPASy Swiss-Prot
Match: EFG_HELPG (Elongation factor G OS=Helicobacter pylori (strain G27) GN=fusA PE=3 SV=1) HSP 1 Score: 77.411 bits (189), Expect = 8.230e-14 Identity = 56/164 (34.15%), Postives = 89/164 (54.27%), Query Frame = 2 Query: 20 KQETVEDVPCGNTVAMVGLDQFITKNATLTNEKEVDAHPIRAMKFSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMV-VCTIEESGEHIVAGAGELHLEICLKDLQDDFMGGAEIIKSDPVVSFRETVLEKSCR----TVMSKSPNKHNRLYMEARPLEEG 496 K+E +++V G A VGL +T + TL +EK +A + M+F PV+ +AV+ K +D K+ L +LA+ DP V T EE+G+ ++ G GELHLEI + L+ +F AEI P V+FRET+ + S ++ ++++ P E G Sbjct: 362 KREDIKEVYAGEICAFVGLKDTLTGD-TLCDEK--NAIVLERMEFP-EPVIHIAVEPKTKADQEKMGVALGKLAEEDPSFRVMTQEETGQTLIGGMGELHLEIIVDRLKREFKVEAEI--GQPQVAFRETIRSSVSKEHKYAKQSGGRGQYGHVFIKLEPKEPG 519
BLAST of CF831988 vs. ExPASy Swiss-Prot
Match: EFG_HELP2 (Elongation factor G OS=Helicobacter pylori (strain P12) GN=fusA PE=3 SV=1) HSP 1 Score: 77.411 bits (189), Expect = 8.230e-14 Identity = 56/164 (34.15%), Postives = 89/164 (54.27%), Query Frame = 2 Query: 20 KQETVEDVPCGNTVAMVGLDQFITKNATLTNEKEVDAHPIRAMKFSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMV-VCTIEESGEHIVAGAGELHLEICLKDLQDDFMGGAEIIKSDPVVSFRETVLEKSCR----TVMSKSPNKHNRLYMEARPLEEG 496 K+E +++V G A VGL +T + TL +EK +A + M+F PV+ +AV+ K +D K+ L +LA+ DP V T EE+G+ ++ G GELHLEI + L+ +F AEI P V+FRET+ + S ++ ++++ P E G Sbjct: 362 KREDIKEVYAGEICAFVGLKDTLTGD-TLCDEK--NAVVLERMEFP-EPVIHIAVEPKTKADQEKMGVALGKLAEEDPSFRVMTQEETGQTLIGGMGELHLEIIVDRLKREFKVEAEI--GQPQVAFRETIRSSVSKEHKYAKQSGGRGQYGHVFIKLEPKEPG 519
BLAST of CF831988 vs. ExPASy Swiss-Prot
Match: EFG_HELAH (Elongation factor G OS=Helicobacter acinonychis (strain Sheeba) GN=fusA PE=3 SV=1) HSP 1 Score: 77.411 bits (189), Expect = 8.230e-14 Identity = 56/164 (34.15%), Postives = 89/164 (54.27%), Query Frame = 2 Query: 20 KQETVEDVPCGNTVAMVGLDQFITKNATLTNEKEVDAHPIRAMKFSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMV-VCTIEESGEHIVAGAGELHLEICLKDLQDDFMGGAEIIKSDPVVSFRETVLEKSCR----TVMSKSPNKHNRLYMEARPLEEG 496 K+E +++V G A VGL +T + TL +EK +A + M+F PV+ +AV+ K +D K+ L +LA+ DP V T EE+G+ ++ G GELHLEI + L+ +F AEI P V+FRET+ + S ++ ++++ P E G Sbjct: 362 KREDIKEVYAGEICAFVGLKDTLTGD-TLCDEK--NAVVLERMEFP-EPVIHIAVEPKTKADQEKMGVALGKLAEEDPSFRVMTQEETGQTLIGGMGELHLEIIVDRLKREFKVEAEI--GQPQVAFRETIRSSVSKEHKYAKQSGGRGQYGHVFIKLEPKEPG 519
BLAST of CF831988 vs. ExPASy Swiss-Prot
Match: EFG_CHLCH (Elongation factor G OS=Chlorobium chlorochromatii (strain CaD3) GN=fusA PE=3 SV=1) HSP 1 Score: 77.411 bits (189), Expect = 8.230e-14 Identity = 66/183 (36.07%), Postives = 99/183 (54.10%), Query Frame = 2 Query: 20 KQETVEDVPCGNTVAMVGLDQFITKNATLTNEKEVDAHPIRAMKFSV-SPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMV-VCTIEESGEHIVAGAGELHLEICLKDLQDDFMGGAEIIKSDPVVSFRETV---LEKSCRTV-MSKSPNKHNRLYMEARPLEEG----LAEAIDDGRIGPRD 538 K+E +E V CG+ A VGL T + TL +E +P+ K PV+++A++ K SD KL L +LA+ DP V T EE+G+ ++AG GELHLEI + L+ +F A + K P V++RET+ +E + V S + + ++ PLEEG +AI G I PR+ Sbjct: 370 KREDIEAVYCGDIAAAVGLKDVKTGD-TLCDEN----NPVVLEKMVFPEPVIQIAIEPKTKSDSDKLGMSLAKLAEEDPTFKVKTDEETGQTLIAGMGELHLEILVDRLRREFKVDANVGK--PQVAYRETIRKSVEFEGKFVRQSGGKGQFGLVNLKVEPLEEGKGYEFVDAIKGGVI-PRE 544
BLAST of CF831988 vs. ExPASy Swiss-Prot
Match: EFG_CAMHC (Elongation factor G OS=Campylobacter hominis (strain ATCC BAA-381 / LMG 19568 / NCTC 13146 / CH001A) GN=fusA PE=3 SV=1) HSP 1 Score: 77.411 bits (189), Expect = 8.230e-14 Identity = 57/164 (34.76%), Postives = 94/164 (57.32%), Query Frame = 2 Query: 20 KQETVEDVPCGNTVAMVGLDQFITKNATLTNEKEVDAHPIRAMKFSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMV-VCTIEESGEHIVAGAGELHLEICLKDLQDDFMGGAEIIKSDPVVSFRETV---LEKSCR-TVMSKSPNKHNRLYMEARPLEEG 496 K+E ++++ G A+VGL +T + TL +EK D + M+F PV+ VAV+ K +D K+ L++LA+ DP V T EESG+ I++G GELHLEI + + +F AE+ K P V++RET+ +E+ + S ++ +++ P+E G Sbjct: 360 KREEIKELYAGEIGAVVGLKDTLTGD-TLASEK--DPVILERMEFP-DPVISVAVEPKTKADQEKMGIALQKLAQEDPSFRVATDEESGQTIISGMGELHLEIIVDRMLREFKVEAEVGK--PQVAYRETIRKTVEQEYKYAKQSGGRGQYGHVFLRLEPMEPG 517 The following BLAST results are available for this feature:
BLAST of CF831988 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 409
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Sequences
The
following sequences are available for this feature:
EST sequence >CF831988 ID=CF831988; Name=CF831988; organism=Citrus sinensis; type=EST; length=704bpback to top |