CF831988

Overview
NameCF831988
Unique NameCF831988
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length704
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF831988 vs. ExPASy Swiss-Prot
Match: EFG_ARCB4 (Elongation factor G OS=Arcobacter butzleri (strain RM4018) GN=fusA PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.833e-13
Identity = 58/163 (35.58%), Postives = 90/163 (55.21%), Query Frame = 2
Query:   23 QETVEDVPCGNTVAMVGLDQFITKNATLTNEKEVDAHPIRAMKFSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMV-VCTIEESGEHIVAGAGELHLEICLKDLQDDFMGGAEIIKSDPVVSFRET----VLEKSCRTVMSKSPNKHNRLYMEARPLEEG 496
            +E ++++  G   A+VGL   IT + TL +EK  D   +  M F   PV+ VAV+ K  +D  K+   L +LA+ DP   V T EESG+ I++G GELHLEI +  ++ +F   AE+    P V++RET    V ++      S    ++  +Y+E +PL  G
Sbjct:  369 REEIKELYAGEIGAVVGLKDTITGD-TLASEK--DPVILERMDFP-DPVISVAVEPKTKADQEKMGIALGKLAEEDPSFRVNTDEESGQTIISGMGELHLEILVDRMKREFKVEAEV--GAPQVAYRETIRNAVKQEYKYAKQSGGKGQYGHVYLEIKPLPSG 525          
BLAST of CF831988 vs. ExPASy Swiss-Prot
Match: EFG2_DESPS (Elongation factor G 2 OS=Desulfotalea psychrophila GN=fusA2 PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.833e-13
Identity = 56/164 (34.15%), Postives = 91/164 (55.49%), Query Frame = 2
Query:   20 KQETVEDVPCGNTVAMVGLDQFITKNATLTNEKEVDAHPIRAMKFSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDP-MVVCTIEESGEHIVAGAGELHLEICLKDLQDDFMGGAEIIKSDPVVSFRETVLEKSCRTVMSKSP----NKHNRLYMEARPLEEG 496
            K+E V+++  G+  A+VGL +F T   TL  EKE     + +M+F   PV+ VA++    +D  KL E L ++A  DP  VV   E++G+ I++G GELHLEI +  L ++F   A +    P VS++E++        + + P    N+  ++ +E  PLE G
Sbjct:  361 KREEVKEIVAGDIGAVVGL-KFTTTGDTLC-EKEAQII-LESMEFP-DPVIGVAIEPSSKADEKKLTESLAKIALEDPSFVVSQNEDTGQTIISGMGELHLEIIVYRLLNEFKVAARV--GTPQVSYKESIQRSHSAEGLFEQPTGSSNQFAKVVLEIEPLERG 518          
BLAST of CF831988 vs. ExPASy Swiss-Prot
Match: EFG_GEOLS (Elongation factor G OS=Geobacter lovleyi (strain ATCC BAA-1151 / DSM 17278 / SZ) GN=fusA PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.395e-13
Identity = 51/134 (38.06%), Postives = 81/134 (60.45%), Query Frame = 2
Query:   20 KQETVEDVPCGNTVAMVGLDQFITKNATLTNEKEVDAHPIRAMKFSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMV-VCTIEESGEHIVAGAGELHLEICLKDLQDDFMGGAEIIKSDPVVSFRETVLEK 418
            K+E +++V  G+  A VGL ++ T   TL NE +  A  + +++F   PV+ +A++ K  SD  KL   L++LA  DP   V T EE+G+ I++G GELHLEI +  +  +F   A + K  P V++RET+ +K
Sbjct:  361 KREEIKEVYAGDIAAAVGL-KYTTTGDTLCNEDQ--AVILESIEFP-EPVISIAIEPKTKSDQEKLGLSLQKLASEDPSFRVKTDEETGQTIISGMGELHLEIIVDRMMREFKVEANVGK--PQVAYRETITKK 488          
BLAST of CF831988 vs. ExPASy Swiss-Prot
Match: EFG_CAMLR (Elongation factor G OS=Campylobacter lari (strain RM2100 / D67 / ATCC BAA-1060) GN=fusA PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.395e-13
Identity = 64/192 (33.33%), Postives = 103/192 (53.65%), Query Frame = 2
Query:   20 KQETVEDVPCGNTVAMVGLDQFITKNATLTNEKEVDAHPIRAMKFSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMV-VCTIEESGEHIVAGAGELHLEICLKDLQDDFMGGAEIIKSDPVVSFRETV---LEKSCR-TVMSKSPNKHNRLYMEARPLEEGLA-EAIDD--GRIGPRDDPKARSKILSE 571
            K+E ++ +  G   A+VGL   +T + TL +EK  D   +  M F   PV+ VAV+ K  +D  K+   L +LA+ DP   V T EESG+ I++G GELHLEI +  +  +F   AE+    P V++RET+   +E+  +    S    ++  +++   PLE G   E ++D  G + P++   A  K + E
Sbjct:  361 KREEIKTLYAGEIGAVVGLKDTLTGD-TLASEK--DKVILERMDFP-DPVISVAVEPKTKADQEKMSIALNKLAQEDPSFRVSTDEESGQTIISGMGELHLEIIVDRMLREFKVEAEV--GQPQVAYRETIRKTVEQEYKYAKQSGGRGQYGHVFLRLEPLEPGSGYEFVNDIKGGVIPKEYIPAVDKGVQE 546          
BLAST of CF831988 vs. ExPASy Swiss-Prot
Match: EFG_ACIAD (Elongation factor G OS=Acinetobacter sp. (strain ADP1) GN=fusA PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.395e-13
Identity = 54/162 (33.33%), Postives = 91/162 (56.17%), Query Frame = 2
Query:   20 KQETVEDVPCGNTVAMVGLDQFITKNATLTNEKEVDAHPIRAMKFSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMV-VCTIEESGEHIVAGAGELHLEICLKDLQDDFMGGAEIIKSDPVVSFRETV---LEKSCRTV-MSKSPNKHNRLYMEARPLE 490
            +++ ++++  G+  A VGL   +T   TL +EK +    +  M+F   PV+ +AV+ K  +D  K+   L RLAK DP   V T EESG+ I+AG GELHL+I +  ++ +F  G E     P+V++RET+   +E+  + V  +    K   +Y+   P++
Sbjct:  370 ERQDLDEIRAGDIAACVGLKD-VTTGDTLCDEKNIIT--LERMEFP-EPVISLAVEPKTKADQEKMSIALGRLAKEDPSFRVRTDEESGQTIIAGMGELHLDIIVDRMKREF--GVEANIGKPMVAYRETIKKSVEQEGKFVRQTGGKGKFGHVYVRLEPMD 525          
BLAST of CF831988 vs. ExPASy Swiss-Prot
Match: EFG1_BORA1 (Elongation factor G 1 OS=Bordetella avium (strain 197N) GN=fusA1 PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.127e-13
Identity = 65/195 (33.33%), Postives = 102/195 (52.31%), Query Frame = 2
Query:   23 QETVEDVPCGNTVAMVGLDQFITKNATLTNEKEVDAH-PIRAMKFSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMV-VCTIEESGEHIVAGAGELHLEICLKDLQDDFMGGAEIIKSDPVVSFRETVLEKSCRTVMSK------SPNKHNRLYMEARPLEEG----LAEAIDDGRIGPRDDPKARSKILSE 571
            +E +++V  G+  A+VGL   +T   TL    ++DAH  +  M+F   PV+  AV+ K  +D  K+   L RLA+ DP   V + EESG+ I++G GELHLEI +  ++ +F  G E     P V++RET+  K+C  V  K         ++  + ++  PL  G      +AI  G + PR+   A  K + E
Sbjct:  369 REEIKEVLAGDIAAVVGLKD-VTTGETLC---DIDAHVTLERMEFP-EPVISQAVEPKSKADQEKMGLALSRLAQEDPSFRVRSDEESGQTIISGMGELHLEILVDRMKREF--GVEANVGKPQVAYRETI-RKTCDEVEGKFVKQSGGRGQYGHVVLKVEPLAPGGGYEFVDAIKGG-VVPREYIPAVDKGIQE 554          
BLAST of CF831988 vs. ExPASy Swiss-Prot
Match: EFG_CAMJR (Elongation factor G OS=Campylobacter jejuni (strain RM1221) GN=fusA PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.085e-13
Identity = 64/192 (33.33%), Postives = 103/192 (53.65%), Query Frame = 2
Query:   20 KQETVEDVPCGNTVAMVGLDQFITKNATLTNEKEVDAHPIRAMKFSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMV-VCTIEESGEHIVAGAGELHLEICLKDLQDDFMGGAEIIKSDPVVSFRETV---LEKSCR-TVMSKSPNKHNRLYMEARPLEEGLA-EAIDD--GRIGPRDDPKARSKILSE 571
            K+E ++ +  G   A+VGL   +T + TL +EK  D   +  M F   PV+ VAV+ K  +D  K+   L +LA+ DP   V T EESG+ I++G GELHLEI +  +  +F   AE+    P V++RET+   +E+  +    S    ++  +++   PLE G   E ++D  G + P++   A  K + E
Sbjct:  361 KREEIKVLYAGEIGAVVGLKDTLTGD-TLASEK--DKVILERMDFP-DPVISVAVEPKTKADQEKMSIALNKLAQEDPSFRVSTDEESGQTIISGMGELHLEIIVDRMLREFKVEAEV--GQPQVAYRETIRKTVEQEYKYAKQSGGRGQYGHVFLRLEPLEPGSGYEFVNDIKGGVIPKEYIPAVDKGVQE 546          
BLAST of CF831988 vs. ExPASy Swiss-Prot
Match: EFG_CAMJJ (Elongation factor G OS=Campylobacter jejuni subsp. jejuni serotype O:23/36 (strain 81-176) GN=fusA PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.085e-13
Identity = 64/192 (33.33%), Postives = 103/192 (53.65%), Query Frame = 2
Query:   20 KQETVEDVPCGNTVAMVGLDQFITKNATLTNEKEVDAHPIRAMKFSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMV-VCTIEESGEHIVAGAGELHLEICLKDLQDDFMGGAEIIKSDPVVSFRETV---LEKSCR-TVMSKSPNKHNRLYMEARPLEEGLA-EAIDD--GRIGPRDDPKARSKILSE 571
            K+E ++ +  G   A+VGL   +T + TL +EK  D   +  M F   PV+ VAV+ K  +D  K+   L +LA+ DP   V T EESG+ I++G GELHLEI +  +  +F   AE+    P V++RET+   +E+  +    S    ++  +++   PLE G   E ++D  G + P++   A  K + E
Sbjct:  361 KREEIKVLYAGEIGAVVGLKDTLTGD-TLASEK--DKVILERMDFP-DPVISVAVEPKTKADQEKMSIALNKLAQEDPSFRVSTDEESGQTIISGMGELHLEIIVDRMLREFKVEAEV--GQPQVAYRETIRKTVEQEYKYAKQSGGRGQYGHVFLRLEPLEPGSGYEFVNDIKGGVIPKEYIPAVDKGVQE 546          
BLAST of CF831988 vs. ExPASy Swiss-Prot
Match: EFG_CAMJE (Elongation factor G OS=Campylobacter jejuni GN=fusA PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.085e-13
Identity = 64/192 (33.33%), Postives = 103/192 (53.65%), Query Frame = 2
Query:   20 KQETVEDVPCGNTVAMVGLDQFITKNATLTNEKEVDAHPIRAMKFSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMV-VCTIEESGEHIVAGAGELHLEICLKDLQDDFMGGAEIIKSDPVVSFRETV---LEKSCR-TVMSKSPNKHNRLYMEARPLEEGLA-EAIDD--GRIGPRDDPKARSKILSE 571
            K+E ++ +  G   A+VGL   +T + TL +EK  D   +  M F   PV+ VAV+ K  +D  K+   L +LA+ DP   V T EESG+ I++G GELHLEI +  +  +F   AE+    P V++RET+   +E+  +    S    ++  +++   PLE G   E ++D  G + P++   A  K + E
Sbjct:  361 KREEIKVLYAGEIGAVVGLKDTLTGD-TLASEK--DKVILERMDFP-DPVISVAVEPKTKADQEKMSIALNKLAQEDPSFRVSTDEESGQTIISGMGELHLEIIVDRMLREFKVEAEV--GQPQVAYRETIRKTVEQEYKYAKQSGGRGQYGHVFLRLEPLEPGSGYEFVNDIKGGVIPKEYIPAVDKGVQE 546          
BLAST of CF831988 vs. ExPASy Swiss-Prot
Match: EFG_CAMJD (Elongation factor G OS=Campylobacter jejuni subsp. doylei (strain ATCC BAA-1458 / RM4099 / 269.97) GN=fusA PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.085e-13
Identity = 64/192 (33.33%), Postives = 103/192 (53.65%), Query Frame = 2
Query:   20 KQETVEDVPCGNTVAMVGLDQFITKNATLTNEKEVDAHPIRAMKFSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMV-VCTIEESGEHIVAGAGELHLEICLKDLQDDFMGGAEIIKSDPVVSFRETV---LEKSCR-TVMSKSPNKHNRLYMEARPLEEGLA-EAIDD--GRIGPRDDPKARSKILSE 571
            K+E ++ +  G   A+VGL   +T + TL +EK  D   +  M F   PV+ VAV+ K  +D  K+   L +LA+ DP   V T EESG+ I++G GELHLEI +  +  +F   AE+    P V++RET+   +E+  +    S    ++  +++   PLE G   E ++D  G + P++   A  K + E
Sbjct:  361 KREEIKVLYAGEIGAVVGLKDTLTGD-TLASEK--DKVILERMDFP-DPVISVAVEPKTKADQEKMSIALNKLAQEDPSFRVSTDEESGQTIISGMGELHLEIIVDRMLREFKVEAEV--GQPQVAYRETIRKAVEQEYKYAKQSGGRGQYGHVFLRLEPLEPGSGYEFVNDIKGGVIPKEYIPAVDKGVQE 546          
The following BLAST results are available for this feature:
BLAST of CF831988 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 409
Match NameE-valueIdentityDescription
EFG_ARCB41.833e-1335.58Elongation factor G OS=Arcobacter butzleri (strain... [more]
EFG2_DESPS1.833e-1334.15Elongation factor G 2 OS=Desulfotalea psychrophila... [more]
EFG_GEOLS2.395e-1338.06Elongation factor G OS=Geobacter lovleyi (strain A... [more]
EFG_CAMLR2.395e-1333.33Elongation factor G OS=Campylobacter lari (strain ... [more]
EFG_ACIAD2.395e-1333.33Elongation factor G OS=Acinetobacter sp. (strain A... [more]
EFG1_BORA13.127e-1333.33Elongation factor G 1 OS=Bordetella avium (strain ... [more]
EFG_CAMJR4.085e-1333.33Elongation factor G OS=Campylobacter jejuni (strai... [more]
EFG_CAMJJ4.085e-1333.33Elongation factor G OS=Campylobacter jejuni subsp.... [more]
EFG_CAMJE4.085e-1333.33Elongation factor G OS=Campylobacter jejuni GN=fus... [more]
EFG_CAMJD4.085e-1333.33Elongation factor G OS=Campylobacter jejuni subsp.... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_01C02_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01C02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF831988 ID=CF831988; Name=CF831988; organism=Citrus sinensis; type=EST; length=704bp
CCGTATTTGGATGGGAAAGAAGCAGGAAACCGTTGAGGATGTGCCTTGTG
GTAACACTGTGGCTATGGTTGGTCTCGATCAATTCATCACTAAAAATGCT
ACCTTGACTAATGAGAAGGAAGTTGATGCCCATCCCATCCGTGCTATGAA
GTTCTCTGTCTCACCTGTTGTTCGTGTGGCTGTCCAGTGCAAAGTCGCTT
CTGATCTCCCTAAGCTTGTTGAAGGTCTTAAGCGTTTGGCCAAGTCAGAT
CCTATGGTTGTCTGTACAATTGAGGAGTCTGGCGAGCACATTGTTGCTGG
TGCGGGAGAACTTCACCTTGAGATCTGTTTGAAGGATCTGCAGGACGATT
TCATGGGAGGTGCTGAAATTATTAAATCTGATCCTGTTGTGTCCTTCCGT
GAAACTGTCCTTGAGAAGTCTTGCCGCACTGTGATGAGTAAGTCTCCCAA
CAAGCATAATCGTCTCTACATGGAAGCCCGACCTCTGGAAGAAGGTCTTG
CTGAGGCCATAGATGATGGCCGCATTGGTCCAAGGGATGATCCCAAGGCT
CGATCTAAGATCTTGTCTGAGGAGTTCGGCTGGGACAAGGATCTTGCGAA
GAAGATTTGGTGTTTTGGTCCTGAGACCACTGGCCCTAACATGTTCGTTG
ATATGTGTAAGGGAGTTCAATACTTGAATGAAATTAAGGATTCTGTTGTT
GCTG
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