CF831988

Overview
NameCF831988
Unique NameCF831988
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length704
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF831988 vs. ExPASy Swiss-Prot
Match: EFG_CAMJ8 (Elongation factor G OS=Campylobacter jejuni subsp. jejuni serotype O:6 (strain 81116 / NCTC 11828) GN=fusA PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.085e-13
Identity = 64/192 (33.33%), Postives = 103/192 (53.65%), Query Frame = 2
Query:   20 KQETVEDVPCGNTVAMVGLDQFITKNATLTNEKEVDAHPIRAMKFSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMV-VCTIEESGEHIVAGAGELHLEICLKDLQDDFMGGAEIIKSDPVVSFRETV---LEKSCR-TVMSKSPNKHNRLYMEARPLEEGLA-EAIDD--GRIGPRDDPKARSKILSE 571
            K+E ++ +  G   A+VGL   +T + TL +EK  D   +  M F   PV+ VAV+ K  +D  K+   L +LA+ DP   V T EESG+ I++G GELHLEI +  +  +F   AE+    P V++RET+   +E+  +    S    ++  +++   PLE G   E ++D  G + P++   A  K + E
Sbjct:  361 KREEIKVLYAGEIGAVVGLKDTLTGD-TLASEK--DKVILERMDFP-DPVISVAVEPKTKADQEKMSIALNKLAQEDPSFRVSTDEESGQTIISGMGELHLEIIVDRMLREFKVEAEV--GQPQVAYRETIRKTVEQEYKYAKQSGGRGQYGHVFLRLEPLEPGSGYEFVNDIKGGVIPKEYIPAVDKGVQE 546          
BLAST of CF831988 vs. ExPASy Swiss-Prot
Match: EFG1_STRCO (Elongation factor G 1 OS=Streptomyces coelicolor GN=fusA PE=3 SV=2)

HSP 1 Score: 75.0998 bits (183), Expect = 4.085e-13
Identity = 50/131 (38.17%), Postives = 80/131 (61.07%), Query Frame = 2
Query:   20 KQETVEDVPCGNTVAMVGLDQFITKNATLTNEKEVDAHPIRAMKFSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMV-VCTIEESGEHIVAGAGELHLEICLKDLQDDFMGGAEIIKSDPVVSFRETV 409
            K+E +E V  G+ VA++GL Q  T   TL+++K      + +M F  +PV++VA++ K   D  KL   ++RLA+ DP   V T EE+G+ I+ G GELHLE+ +  ++ +F   A + K  P V++RET+
Sbjct:  375 KREEIESVGAGDIVAVMGLKQ-TTTGETLSDDKSPVI--LESMDFP-APVIQVAIEPKSKGDQEKLGVAIQRLAEEDPSFQVHTNEETGQTIIGGMGELHLEVLVDRMRREFKVEANVGK--PQVAYRETI 499          
BLAST of CF831988 vs. ExPASy Swiss-Prot
Match: EFG_STRRA (Elongation factor G (Fragment) OS=Streptomyces ramocissimus GN=fus PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 5.335e-13
Identity = 50/131 (38.17%), Postives = 80/131 (61.07%), Query Frame = 2
Query:   20 KQETVEDVPCGNTVAMVGLDQFITKNATLTNEKEVDAHPIRAMKFSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMV-VCTIEESGEHIVAGAGELHLEICLKDLQDDFMGGAEIIKSDPVVSFRETV 409
            K+E +E V  G+ VA++GL Q  T   TL++EK      + +M F  +PV++VA++ K   D  KL   ++RLA+ DP   V + EE+G+ I+ G GELHLE+ +  ++ +F   A + K  P V++RET+
Sbjct:    8 KREEIESVGAGDIVAVMGLKQ-TTTGETLSDEKSPVI--LESMDFP-APVIQVAIEPKSKGDQEKLGVAIQRLAEEDPSFQVHSDEETGQTIIGGMGELHLEVLVDRMRREFKVEANVGK--PQVAYRETI 132          
BLAST of CF831988 vs. ExPASy Swiss-Prot
Match: EFG_HALHL (Elongation factor G OS=Halorhodospira halophila (strain DSM 244 / SL1) GN=fusA PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 5.335e-13
Identity = 55/175 (31.43%), Postives = 93/175 (53.14%), Query Frame = 2
Query:   20 KQETVEDVPCGNTVAMVGLDQFITKNATLTNEKEVDAHPIRAMKFSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMV-VCTIEESGEHIVAGAGELHLEICLKDLQDDFMGGAEIIKSDPVVSFRETV---LEKSCRTV-MSKSPNKHNRLYMEARPLEEGLAEAIDDGRIG 529
            ++E +++V  G+  A VGL    T +       +V    +  M+F   PV+ VAV+ K  SD  K+ + L RLA+ DP   V T EESG+ I++G GELHL+I +  L+ +F   A +    P V++RET+   +E+  + V  S    ++  +++  +P E G   + +   +G
Sbjct:  369 QREEIKEVRAGDIAAAVGLKDVTTGDTLCDPSNKVT---LERMEFP-EPVIAVAVEPKTRSDQEKMGQALGRLAQEDPSFRVRTDEESGQTIISGMGELHLDIIVDRLKREFKVEANV--GAPQVAYRETIRKQIEQEGKFVRQSGGRGQYGHVHIRMKPQERGEGYSFESKIVG 537          
BLAST of CF831988 vs. ExPASy Swiss-Prot
Match: EFG2_METCA (Elongation factor G 2 OS=Methylococcus capsulatus GN=fusA2 PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 5.335e-13
Identity = 60/192 (31.25%), Postives = 103/192 (53.65%), Query Frame = 2
Query:   23 QETVEDVPCGNTVAMVGLDQFITKNATLTNEKEVDAHPIRAMKFSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMV-VCTIEESGEHIVAGAGELHLEICLKDLQDDFMGGAEIIKSDPVVSFRETV---LEKSCRTV-MSKSPNKHNRLYMEARPLEEGLAEAIDDGRIG---PRDDPKARSKILSEE 574
            +E V++V  G+  A +GL   +T   TL + K+V    +  M+F   PV+ VAV+ K  +D  K+   L +LA+ DP   V T EESG+ I++G GELHLEI +  ++ +F  G +     P V++RET+   +E+  + V  +    ++  +++   PL+ G      +G +G   P++   A  K + E+
Sbjct:  369 REEVKEVRAGDIAAAIGLKD-VTTGDTLCDPKDVIT--LERMEFP-EPVISVAVEPKTKADQEKMGIALNKLAQEDPSFRVRTDEESGQTIISGMGELHLEIIVDRMKREF--GVDANVGAPQVAYRETIRKAVEQEGKYVRQTGGRGQYGHVWLRIEPLDPGGGYEFVNGIVGGVVPKEYIPAVDKGIQEQ 554          
BLAST of CF831988 vs. ExPASy Swiss-Prot
Match: EFG_ERWT9 (Elongation factor G OS=Erwinia tasmaniensis (strain DSM 17950 / Et1/99) GN=fusA PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 6.967e-13
Identity = 57/165 (34.55%), Postives = 87/165 (52.73%), Query Frame = 2
Query:   20 KQETVEDVPCGNTVAMVGLDQFITKNATLTNEKEVDAHPIRAMKFSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMV-VCTIEESGEHIVAGAGELHLEICLKDLQDDFMGGAEIIKSDPVVSFRETVLE-----KSCRTVMSKSPNKHNRLYMEARPLEEG 496
            K+E +++V  G+  A +GL   +T   TL +   V    +  M+F   PV+ VAV+ K  +D  K+   L RLAK DP   V T EESG+ I+AG GELHL+I +  ++ +F   A + K  P V++RET+ E     +      S    +   + ++  PLE G
Sbjct:  370 KREEIKEVRAGDIAAAIGLKD-VTTGDTLCDPSNVII--LERMEFP-EPVISVAVEPKTKADQEKMGLALGRLAKEDPSFRVWTDEESGQTIIAGMGELHLDILVDRMKREFNVEANVGK--PQVAYRETIRETVKDVEGKHAKQSGGRGQFGHVVIDMGPLEAG 528          
BLAST of CF831988 vs. ExPASy Swiss-Prot
Match: EFG_CHRVO (Elongation factor G OS=Chromobacterium violaceum GN=fusA PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 6.967e-13
Identity = 51/130 (39.23%), Postives = 73/130 (56.15%), Query Frame = 2
Query:   23 QETVEDVPCGNTVAMVGLDQFITKNATLTNEKEVDAHPIRAMKFSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMV-VCTIEESGEHIVAGAGELHLEICLKDLQDDFMGGAEIIKSDPVVSFRETV 409
            ++ +E+V  G+  A +GL + +T   TL     VDA  I        PV+ VAV+ K  +D  K+   L RLAK DP   V T EESG+ I++G GELHLEI +  ++ +F  G E     P V++RET+
Sbjct:  368 RKEIEEVRAGDIAAAIGLKE-VTTGETLC---AVDAEIILERMEFPDPVIHVAVEPKTKADQEKMGVALNRLAKEDPSFRVRTDEESGQTIISGMGELHLEILVDRMKREF--GVEANVGAPQVAYRETI 491          
BLAST of CF831988 vs. ExPASy Swiss-Prot
Match: EFG_ANATD (Elongation factor G OS=Anaerocellum thermophilum (strain DSM 6725 / Z-1320) GN=fusA PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 6.967e-13
Identity = 56/166 (33.73%), Postives = 92/166 (55.42%), Query Frame = 2
Query:   23 QETVEDVPCGNTVAMVGLDQFITKNATLTNEKEVDAHPI--RAMKFSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMV-VCTIEESGEHIVAGAGELHLEICLKDLQDDFMGGAEIIKSDPVVSFRETVLEKSCRTV-----MSKSPNKHNRLYMEARPLEEG 496
            +E V+ V  G+  A +GL    T + TL +E     HPI   +M+F   PV++VA++ K  +D  K+   L+RLA+ DP   V T  E+G+ ++AG GELHLEI +  ++ +F    E+    P V+++ET+ +KS +        S    ++  +++E  PLE G
Sbjct:  362 REDVDAVYAGDICAAIGLSNTTTGD-TLCDEN----HPIVLESMEFP-EPVIQVAIEPKTKADQEKMGIALQRLAEEDPTFKVSTNHETGQTLIAGMGELHLEIIVDRMRREFK--VEVNVGKPQVAYKETI-KKSVKVEGKYIRQSGGRGQYGHVWLELEPLERG 518          
BLAST of CF831988 vs. ExPASy Swiss-Prot
Match: EFG1_GEOMG (Elongation factor G 1 OS=Geobacter metallireducens (strain GS-15 / ATCC 53774 / DSM 7210) GN=fusA1 PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 6.967e-13
Identity = 65/192 (33.85%), Postives = 98/192 (51.04%), Query Frame = 2
Query:   20 KQETVEDVPCGNTVAMVGLDQFITKNATLTNEKEVDAHPIRAMKFSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMV-VCTIEESGEHIVAGAGELHLEICLKDLQDDFMGGAEIIKSDPVVSFRETVLEK----SCRTVMSKSPNKHNRLYMEARPLEEGLA-EAID--DGRIGPRDDPKARSKILSE 571
            K+E +++V  G+  A VGL ++ T   TL  E   DA  I        PV+ +A++ K  +D  KL   L++LA  DP   V T EE+G+ I++G GELHLEI +  L  +F   A + K  P V++RETV +K          S    ++  +++E  P E G   E +D   G + PR+   A  K + E
Sbjct:  362 KREEIKEVLAGDIAAAVGL-KYTTTGDTLCPE---DAPVILESIEFPEPVIAIAIEPKTKADQEKLGISLQKLASEDPSFRVRTDEETGQTIISGMGELHLEIIVDRLMREFKVEANVGK--PQVAYRETVTKKVKVEGKFVRQSGGRGQYGHVWIEMEPQEPGKGYEFVDAIKGGVVPREYIPAVDKGIQE 547          
BLAST of CF831988 vs. ExPASy Swiss-Prot
Match: EFG_PSYWF (Elongation factor G OS=Psychrobacter sp. (strain PRwf-1) GN=fusA PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 9.099e-13
Identity = 55/161 (34.16%), Postives = 92/161 (57.14%), Query Frame = 2
Query:   23 QETVEDVPCGNTVAMVGLDQFITKNATLTNEKEVDAHPIRAMKFSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMV-VCTIEESGEHIVAGAGELHLEICLKDLQDDFMGGAEIIKSDPVVSFRETV---LEKSCRTV-MSKSPNKHNRLYMEARPLE 490
            Q+ ++++  G+  A+VG+    T + TL +EKE+    +  M+F   PV+ +AV+ K  +D  K+   L RLAK DP   V T EESG+ I++G GELHLEI +  ++ +F   A I    P V++RET+   +E+  + V  +    K   ++++  PL+
Sbjct:  371 QQELDEIRAGDIAALVGMKDVGTGD-TLCDEKEIIT--LERMEFP-EPVISLAVEPKTKADQEKMSIALGRLAKEDPSFRVHTDEESGQTIISGMGELHLEILVDRMKREFKVEANI--GAPQVAYRETIRGTVEQEGKFVRQTGGRGKFGHVWLKLEPLD 525          
The following BLAST results are available for this feature:
BLAST of CF831988 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 409
Match NameE-valueIdentityDescription
EFG_CAMJ84.085e-1333.33Elongation factor G OS=Campylobacter jejuni subsp.... [more]
EFG1_STRCO4.085e-1338.17Elongation factor G 1 OS=Streptomyces coelicolor G... [more]
EFG_STRRA5.335e-1338.17Elongation factor G (Fragment) OS=Streptomyces ram... [more]
EFG_HALHL5.335e-1331.43Elongation factor G OS=Halorhodospira halophila (s... [more]
EFG2_METCA5.335e-1331.25Elongation factor G 2 OS=Methylococcus capsulatus ... [more]
EFG_ERWT96.967e-1334.55Elongation factor G OS=Erwinia tasmaniensis (strai... [more]
EFG_CHRVO6.967e-1339.23Elongation factor G OS=Chromobacterium violaceum G... [more]
EFG_ANATD6.967e-1333.73Elongation factor G OS=Anaerocellum thermophilum (... [more]
EFG1_GEOMG6.967e-1333.85Elongation factor G 1 OS=Geobacter metallireducens... [more]
EFG_PSYWF9.099e-1334.16Elongation factor G OS=Psychrobacter sp. (strain P... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_01C02_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01C02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF831988 ID=CF831988; Name=CF831988; organism=Citrus sinensis; type=EST; length=704bp
CCGTATTTGGATGGGAAAGAAGCAGGAAACCGTTGAGGATGTGCCTTGTG
GTAACACTGTGGCTATGGTTGGTCTCGATCAATTCATCACTAAAAATGCT
ACCTTGACTAATGAGAAGGAAGTTGATGCCCATCCCATCCGTGCTATGAA
GTTCTCTGTCTCACCTGTTGTTCGTGTGGCTGTCCAGTGCAAAGTCGCTT
CTGATCTCCCTAAGCTTGTTGAAGGTCTTAAGCGTTTGGCCAAGTCAGAT
CCTATGGTTGTCTGTACAATTGAGGAGTCTGGCGAGCACATTGTTGCTGG
TGCGGGAGAACTTCACCTTGAGATCTGTTTGAAGGATCTGCAGGACGATT
TCATGGGAGGTGCTGAAATTATTAAATCTGATCCTGTTGTGTCCTTCCGT
GAAACTGTCCTTGAGAAGTCTTGCCGCACTGTGATGAGTAAGTCTCCCAA
CAAGCATAATCGTCTCTACATGGAAGCCCGACCTCTGGAAGAAGGTCTTG
CTGAGGCCATAGATGATGGCCGCATTGGTCCAAGGGATGATCCCAAGGCT
CGATCTAAGATCTTGTCTGAGGAGTTCGGCTGGGACAAGGATCTTGCGAA
GAAGATTTGGTGTTTTGGTCCTGAGACCACTGGCCCTAACATGTTCGTTG
ATATGTGTAAGGGAGTTCAATACTTGAATGAAATTAAGGATTCTGTTGTT
GCTG
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