CF831988

Overview
NameCF831988
Unique NameCF831988
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length704
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF831988 vs. ExPASy Swiss-Prot
Match: EF2_ENCCU (Elongation factor 2 OS=Encephalitozoon cuniculi GN=EFT1 PE=1 SV=1)

HSP 1 Score: 182.185 bits (461), Expect = 2.372e-45
Identity = 97/231 (41.99%), Postives = 139/231 (60.17%), Query Frame = 2
Query:    5 IWMGKKQETVEDVPCGNTVAMVGLDQFITKNATLTNEKEVDAHPIRAMKFSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMVVCTIEESGEHIVAGAGELHLEICLKDLQDDFMGGAEIIKSDPVVSFRETVLEKSCRTVMSKSPNKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKARSKILSEEFGWDKDLAKKIWCFGPETTGPNMFVDMCKGVQYLNEIKDSV 697
            + MG+  + V + P GN + ++G+D  + K  T+TN +   AH IR+MKFSVSPVV+VAV  K   DL KL EGL +LA+SDP+ V    + G++ +A AG LHLEICLKDLQD +     II  DP+V++ E +      + M+KS NKHNR+YM   PL++ + + + D +    D  K  +    E+     D  +KIWC+ PE    N+ VD  KG+  +NEIK+ V
Sbjct:  447 VMMGRGYKDVPNCPAGNIIGIIGIDDCLKKTGTITNREA--AHNIRSMKFSVSPVVKVAVSAKRPEDLGKLQEGLNKLAQSDPLCVVERNDKGQNTIACAGSLHLEICLKDLQDQY-AKVPIIADDPLVTYFEGISCAVSDSKMTKSANKHNRIYMTVEPLDQNIVDNLKDVK---SDQAKTMATNFREKLDIRDDWIRKIWCYAPEVNPLNLLVDGTKGISIINEIKEHV 671          
BLAST of CF831988 vs. ExPASy Swiss-Prot
Match: EF2_AERPE (Elongation factor 2 OS=Aeropyrum pernix GN=fusA PE=3 SV=1)

HSP 1 Score: 174.481 bits (441), Expect = 4.947e-43
Identity = 93/234 (39.74%), Postives = 143/234 (61.11%), Query Frame = 2
Query:    5 IWMGKKQETVEDVPCGNTVAMVGLDQFITKNATLTNEKEVDAHPIRAMKFSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMVVCTI-EESGEHIVAGAGELHLEICLKDLQDDFMGGAEIIKSDPVVSFRETVLEKSCRTVMSKSPNKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKARSKILSEEFGWDKDLAKKIWCFGPETTGPNMFVDMCKGVQYLNEIKDSVVA 703
            I+MG  +E  +++P GN  A++G +        ++   E +A P  ++++   PVV +AV+     DLPK++E L++L   DP +V  I EE+GE++++G G LHLEI L  L++ F  G E+  S P+V +RETV ++S R    KSPNKHN+LY+   PL E     I +G +    DPK R++IL+++ GWD + A+KIW         N+FVD   GVQYL E+KD+++A
Sbjct:  341 IYMGPFREVTKEIPAGNIGAVMGFEDVRAGETVVSLGYEENAAPFESLRYVSEPVVTIAVEPVKIQDLPKMIEALRKLTIEDPNLVVKINEETGEYLLSGMGPLHLEIALTMLREKF--GVEVKASPPIVVYRETVRQQS-RVFEGKSPNKHNKLYISVEPLNEETITLIQNGAVTEDQDPKDRARILADKAGWDYNEARKIWAIDENI---NVFVDKTAGVQYLREVKDTIIA 568          
BLAST of CF831988 vs. ExPASy Swiss-Prot
Match: EF2_IGNH4 (Elongation factor 2 OS=Ignicoccus hospitalis (strain KIN4/I / DSM 18386 / JCM 14125) GN=fusA PE=3 SV=1)

HSP 1 Score: 172.17 bits (435), Expect = 2.455e-42
Identity = 95/234 (40.60%), Postives = 141/234 (60.26%), Query Frame = 2
Query:    5 IWMGKKQETVEDVPCGNTVAMVGLDQFITKNATLTNEKEVDAHPIRAMKFSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMVVCTI-EESGEHIVAGAGELHLEICLKDLQDDFMGGAEIIKSDPVVSFRETVLEKSCRTVMSKSPNKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKARSKILSEEFGWDKDLAKKIWCFGPETTGPNMFVDMCKGVQYLNEIKDSVVA 703
            I+MG  +E V+ V  GN VAM+GLD        +    +  A P   + +   PVV VA++ K   DLPKL+E L+ L+  DP +  TI +E+GE++++G G LH+EI L  L++ +  G E+  S PV+++RETV  K    V  KSPNKHN+LY+   PLE+ + E I  G I    DP+ R+K+L ++  WD D A++IW    E    N+F+D   GVQ+L E+KD+++A
Sbjct:  344 IYMGPDREIVDYVTAGNIVAMLGLDDARAGETLVDINYKDQAAPFEQLHYVSEPVVTVAIEPKNPRDLPKLIEALRTLSIEDPNLKVTINQETGEYLLSGMGMLHIEIALTQLKEVY--GLEVKVSPPVITYRETV-RKPGEKVEGKSPNKHNKLYITVEPLEKEVIEMIQKGEITDDQDPRERAKVLRDKVNWDADTARRIWAVDEENF--NIFIDKTVGVQHLREVKDTILA 572          
BLAST of CF831988 vs. ExPASy Swiss-Prot
Match: EF2_STAMF (Elongation factor 2 OS=Staphylothermus marinus (strain ATCC 43588 / DSM 3639 / F1) GN=fusA PE=3 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 4.188e-42
Identity = 90/233 (38.63%), Postives = 142/233 (60.94%), Query Frame = 2
Query:    5 IWMGKKQETVEDVPCGNTVAMVGLDQFITKNATLTNEKEVDAHPIRAMKFSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMVVCTI-EESGEHIVAGAGELHLEICLKDLQDDFMGGAEIIKSDPVVSFRETVLEKSCRTVMSKSPNKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKARSKILSEEFGWDKDLAKKIWCFGPETTGPNMFVDMCKGVQYLNEIKDSVV 700
            ++MG  +E  +++  GN  A++GLD+       +  E +    P   ++    PVV VA++ K   DLPKL++ L +L+  DP +V  I EE+GE++++G G LH+EI L  L++++  G ++I S P++ +RE++ +KS R    KSPNKHN+LY+   PL+E     I DG I    DPK R+K+L EE GW  D A++IW         N+FVD+  GVQ+L E+KD+++
Sbjct:  341 LYMGPYRELADEIVAGNIAAVLGLDKARAGETVVAVEYKDMMTPFEKLRMISEPVVTVAIEPKNPRDLPKLIDALHKLSIEDPSLVVRINEETGEYLLSGMGPLHIEIALTFLKENY--GLDVIASQPIIVYRESIRDKS-RVFEGKSPNKHNKLYISVEPLDEKTISLIHDGIITEDMDPKQRAKVLREEAGWPTDQARRIWAIDENI---NVFVDLTTGVQHLREVKDTII 567          
BLAST of CF831988 vs. ExPASy Swiss-Prot
Match: EF2_METPE (Elongation factor 2 OS=Methanosphaerula palustris (strain ATCC BAA-1556 / DSM 19958 / E1-9c) GN=fusA PE=3 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 5.119e-40
Identity = 98/233 (42.06%), Postives = 142/233 (60.94%), Query Frame = 2
Query:    5 IWMGKKQETVEDVPCGNTVAMVGLDQFITKNATLTNEKEVDAHPIRAMKFSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMVVCTI-EESGEHIVAGAGELHLEICLKDLQDDFMGGAEIIKSDPVVSFRETVLEKSCRTVMSKSPNKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKARSKILSEEFGWDKDLAKKIWCFGPETTGPNMFVDMCKGVQYLNEIKDSVV 700
            I+MG  +  VE++P GN  A+ GL   I   +T+TN +E+   P  A+     PV+ VAV+ K   DLPKLVE L+++AK DP +V TI EE+GEH+++G GELHLEI    ++ D   G EI+ S+P+V +RET   K+   +  KSPN+HNR Y+E  PL++ + + I +G +        R  IL    GW+KD AK I     + +  N+F+DM KGVQYLNE  + ++
Sbjct:  341 IFMGPTRVEVEELPAGNIAAVTGLKDAIV-GSTVTNLREMV--PFEALTHYSEPVMTVAVEAKNMKDLPKLVEVLRQVAKEDPTLVITINEETGEHLISGMGELHLEIITGRIKRD--KGVEIVTSEPIVVYRETATRKA-GPIEGKSPNRHNRFYVELEPLDQVIVDLIRNGEVSMNQTWIERRDILVAN-GWEKDEAKNI----KDISTTNIFIDMTKGVQYLNETMELIL 562          
BLAST of CF831988 vs. ExPASy Swiss-Prot
Match: U5S1_MOUSE (116 kDa U5 small nuclear ribonucleoprotein component OS=Mus musculus GN=Eftud2 PE=2 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 3.318e-39
Identity = 90/240 (37.50%), Postives = 145/240 (60.42%), Query Frame = 2
Query:    2 RIWMGKKQETVE--DVPCGNTVAMVGLDQFITKNATLTNEK-EVDAHPIRAMKFSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMVVCTIEESGEHIVAGAGELHLEICLKDLQDDFMGGAEIIKSDPVVSFRETVLEKSCRTVMSKSPNKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKARSKILSEEFGWDKDLAKKIWCFGPETTGPNMFVDMCKGVQ----YLNEIKDSVV 700
            R+W+   +  +E   VP GN V + G+DQ I K AT+T  +   +A   R +KF+ + V+++AV+    S+LPK+++GL+++ KS P +   +EESGEH++ G GEL+L+  + DL+  +    +I  +DPVV+F ETV+E S     +++PNK N++ M A PLE+GLAE I++  +    + K   +    ++ WD   A+ IW FGP+ TGPN+ VD     +     L  +KDS+V
Sbjct:  528 RLWISVARYHIEVNRVPAGNWVLIEGVDQPIVKTATITEPRGNEEAQIFRPLKFNTTSVIKIAVEPVNPSELPKMLDGLRKVNKSYPSLTTKVEESGEHVILGTGELYLDCVMHDLRKMY-SEIDIKVADPVVTFCETVVETSSLKCFAETPNKKNKITMIAEPLEKGLAEDIENEVVQITWNRKKLGEFFQTKYDWDLLAARSIWAFGPDATGPNILVDDTLPSEVDKALLGSVKDSIV 766          
BLAST of CF831988 vs. ExPASy Swiss-Prot
Match: U5S1_HUMAN (116 kDa U5 small nuclear ribonucleoprotein component OS=Homo sapiens GN=EFTUD2 PE=1 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 3.318e-39
Identity = 90/240 (37.50%), Postives = 145/240 (60.42%), Query Frame = 2
Query:    2 RIWMGKKQETVE--DVPCGNTVAMVGLDQFITKNATLTNEK-EVDAHPIRAMKFSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMVVCTIEESGEHIVAGAGELHLEICLKDLQDDFMGGAEIIKSDPVVSFRETVLEKSCRTVMSKSPNKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKARSKILSEEFGWDKDLAKKIWCFGPETTGPNMFVDMCKGVQ----YLNEIKDSVV 700
            R+W+   +  +E   VP GN V + G+DQ I K AT+T  +   +A   R +KF+ + V+++AV+    S+LPK+++GL+++ KS P +   +EESGEH++ G GEL+L+  + DL+  +    +I  +DPVV+F ETV+E S     +++PNK N++ M A PLE+GLAE I++  +    + K   +    ++ WD   A+ IW FGP+ TGPN+ VD     +     L  +KDS+V
Sbjct:  529 RLWISVARYHIEVNRVPAGNWVLIEGVDQPIVKTATITEPRGNEEAQIFRPLKFNTTSVIKIAVEPVNPSELPKMLDGLRKVNKSYPSLTTKVEESGEHVILGTGELYLDCVMHDLRKMY-SEIDIKVADPVVTFCETVVETSSLKCFAETPNKKNKITMIAEPLEKGLAEDIENEVVQITWNRKKLGEFFQTKYDWDLLAARSIWAFGPDATGPNILVDDTLPSEVDKALLGSVKDSIV 767          
BLAST of CF831988 vs. ExPASy Swiss-Prot
Match: U5S1_BOVIN (116 kDa U5 small nuclear ribonucleoprotein component OS=Bos taurus GN=EFTUD2 PE=2 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 3.318e-39
Identity = 90/240 (37.50%), Postives = 145/240 (60.42%), Query Frame = 2
Query:    2 RIWMGKKQETVE--DVPCGNTVAMVGLDQFITKNATLTNEK-EVDAHPIRAMKFSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMVVCTIEESGEHIVAGAGELHLEICLKDLQDDFMGGAEIIKSDPVVSFRETVLEKSCRTVMSKSPNKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKARSKILSEEFGWDKDLAKKIWCFGPETTGPNMFVDMCKGVQ----YLNEIKDSVV 700
            R+W+   +  +E   VP GN V + G+DQ I K AT+T  +   +A   R +KF+ + V+++AV+    S+LPK+++GL+++ KS P +   +EESGEH++ G GEL+L+  + DL+  +    +I  +DPVV+F ETV+E S     +++PNK N++ M A PLE+GLAE I++  +    + K   +    ++ WD   A+ IW FGP+ TGPN+ VD     +     L  +KDS+V
Sbjct:  529 RLWISVARYHIEVNRVPAGNWVLIEGVDQPIVKTATITEPRGNEEAQIFRPLKFNTTSVIKIAVEPVNPSELPKMLDGLRKVNKSYPSLTTKVEESGEHVILGTGELYLDCVMHDLRKMY-SEIDIKVADPVVTFCETVVETSSLKCFAETPNKKNKITMIAEPLEKGLAEDIENEVVQITWNRKKLGEFFQTKYDWDLLAARSIWAFGPDATGPNILVDDTLPSEVDKALLGSVKDSIV 767          
BLAST of CF831988 vs. ExPASy Swiss-Prot
Match: U5S1_CHICK (116 kDa U5 small nuclear ribonucleoprotein component OS=Gallus gallus GN=EFTUD2 PE=2 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 4.334e-39
Identity = 90/240 (37.50%), Postives = 145/240 (60.42%), Query Frame = 2
Query:    2 RIWMGKKQETVE--DVPCGNTVAMVGLDQFITKNATLTNEK-EVDAHPIRAMKFSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMVVCTIEESGEHIVAGAGELHLEICLKDLQDDFMGGAEIIKSDPVVSFRETVLEKSCRTVMSKSPNKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKARSKILSEEFGWDKDLAKKIWCFGPETTGPNMFVDMCKGVQ----YLNEIKDSVV 700
            R+W+   +  +E   VP GN V + G+DQ I K AT+T  +   +A   R +KF+ + V+++AV+    S+LPK+++GL+++ KS P +   +EESGEH++ G GEL+L+  + DL+  +    +I  +DPVV+F ETV+E S     +++PNK N++ M A PLE+GLAE I++  +    + K   +    ++ WD   A+ IW FGP+ TGPN+ VD     +     L  +KDS+V
Sbjct:  529 RLWISVARYHIEVNRVPAGNWVLIEGVDQPIVKTATVTEPRGNEEAQIFRPLKFNTTSVIKIAVEPVNPSELPKMLDGLRKVNKSYPSLTTKVEESGEHVILGTGELYLDCVMHDLRKMY-SEIDIKVADPVVTFCETVVETSSLKCFAETPNKKNKITMIAEPLEKGLAEDIENEVVQITWNRKKLGEFFQTKYDWDLLAARSIWAFGPDATGPNILVDDTLPSEVDKALLGSVKDSIV 767          
BLAST of CF831988 vs. ExPASy Swiss-Prot
Match: U5S1_PONAB (116 kDa U5 small nuclear ribonucleoprotein component OS=Pongo abelii GN=EFTUD2 PE=2 SV=1)

HSP 1 Score: 160.999 bits (406), Expect = 5.660e-39
Identity = 90/240 (37.50%), Postives = 144/240 (60.00%), Query Frame = 2
Query:    2 RIWMGKKQETVE--DVPCGNTVAMVGLDQFITKNATLTNEK-EVDAHPIRAMKFSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMVVCTIEESGEHIVAGAGELHLEICLKDLQDDFMGGAEIIKSDPVVSFRETVLEKSCRTVMSKSPNKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKARSKILSEEFGWDKDLAKKIWCFGPETTGPNMFVDMCKGVQ----YLNEIKDSVV 700
            R+W+   +  +E   VP GN V + G+DQ I K AT+T  +   +A   R +KF+ + V+++AV+    S+LPK+++GL+++ KS P +   +EESGEH++ G GEL+L+  + DL   +    +I  +DPVV+F ETV+E S     +++PNK N++ M A PLE+GLAE I++  +    + K   +    ++ WD   A+ IW FGP+ TGPN+ VD     +     L  +KDS+V
Sbjct:  529 RLWISVARYHIEVNRVPAGNWVLIEGVDQPIVKTATITEPRGNEEAQIFRPLKFNTTSVIKIAVEPVNPSELPKMLDGLRKVNKSYPSLTTKVEESGEHVILGTGELYLDCVMHDLPKMY-SEIDIKVADPVVTFCETVVETSSLKCFAETPNKKNKITMIAEPLEKGLAEDIENEVVQITWNRKKLGEFFQTKYDWDLLAARSIWAFGPDATGPNILVDDTLPSEVDKALLGSVKDSIV 767          
The following BLAST results are available for this feature:
BLAST of CF831988 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 409
Match NameE-valueIdentityDescription
EF2_ENCCU2.372e-4541.99Elongation factor 2 OS=Encephalitozoon cuniculi GN... [more]
EF2_AERPE4.947e-4339.74Elongation factor 2 OS=Aeropyrum pernix GN=fusA PE... [more]
EF2_IGNH42.455e-4240.60Elongation factor 2 OS=Ignicoccus hospitalis (stra... [more]
EF2_STAMF4.188e-4238.63Elongation factor 2 OS=Staphylothermus marinus (st... [more]
EF2_METPE5.119e-4042.06Elongation factor 2 OS=Methanosphaerula palustris ... [more]
U5S1_MOUSE3.318e-3937.50116 kDa U5 small nuclear ribonucleoprotein compone... [more]
U5S1_HUMAN3.318e-3937.50116 kDa U5 small nuclear ribonucleoprotein compone... [more]
U5S1_BOVIN3.318e-3937.50116 kDa U5 small nuclear ribonucleoprotein compone... [more]
U5S1_CHICK4.334e-3937.50116 kDa U5 small nuclear ribonucleoprotein compone... [more]
U5S1_PONAB5.660e-3937.50116 kDa U5 small nuclear ribonucleoprotein compone... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_01C02_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01C02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF831988 ID=CF831988; Name=CF831988; organism=Citrus sinensis; type=EST; length=704bp
CCGTATTTGGATGGGAAAGAAGCAGGAAACCGTTGAGGATGTGCCTTGTG
GTAACACTGTGGCTATGGTTGGTCTCGATCAATTCATCACTAAAAATGCT
ACCTTGACTAATGAGAAGGAAGTTGATGCCCATCCCATCCGTGCTATGAA
GTTCTCTGTCTCACCTGTTGTTCGTGTGGCTGTCCAGTGCAAAGTCGCTT
CTGATCTCCCTAAGCTTGTTGAAGGTCTTAAGCGTTTGGCCAAGTCAGAT
CCTATGGTTGTCTGTACAATTGAGGAGTCTGGCGAGCACATTGTTGCTGG
TGCGGGAGAACTTCACCTTGAGATCTGTTTGAAGGATCTGCAGGACGATT
TCATGGGAGGTGCTGAAATTATTAAATCTGATCCTGTTGTGTCCTTCCGT
GAAACTGTCCTTGAGAAGTCTTGCCGCACTGTGATGAGTAAGTCTCCCAA
CAAGCATAATCGTCTCTACATGGAAGCCCGACCTCTGGAAGAAGGTCTTG
CTGAGGCCATAGATGATGGCCGCATTGGTCCAAGGGATGATCCCAAGGCT
CGATCTAAGATCTTGTCTGAGGAGTTCGGCTGGGACAAGGATCTTGCGAA
GAAGATTTGGTGTTTTGGTCCTGAGACCACTGGCCCTAACATGTTCGTTG
ATATGTGTAAGGGAGTTCAATACTTGAATGAAATTAAGGATTCTGTTGTT
GCTG
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