CF831988
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF831988 vs. ExPASy Swiss-Prot
Match: EF2_ENCCU (Elongation factor 2 OS=Encephalitozoon cuniculi GN=EFT1 PE=1 SV=1) HSP 1 Score: 182.185 bits (461), Expect = 2.372e-45 Identity = 97/231 (41.99%), Postives = 139/231 (60.17%), Query Frame = 2 Query: 5 IWMGKKQETVEDVPCGNTVAMVGLDQFITKNATLTNEKEVDAHPIRAMKFSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMVVCTIEESGEHIVAGAGELHLEICLKDLQDDFMGGAEIIKSDPVVSFRETVLEKSCRTVMSKSPNKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKARSKILSEEFGWDKDLAKKIWCFGPETTGPNMFVDMCKGVQYLNEIKDSV 697 + MG+ + V + P GN + ++G+D + K T+TN + AH IR+MKFSVSPVV+VAV K DL KL EGL +LA+SDP+ V + G++ +A AG LHLEICLKDLQD + II DP+V++ E + + M+KS NKHNR+YM PL++ + + + D + D K + E+ D +KIWC+ PE N+ VD KG+ +NEIK+ V Sbjct: 447 VMMGRGYKDVPNCPAGNIIGIIGIDDCLKKTGTITNREA--AHNIRSMKFSVSPVVKVAVSAKRPEDLGKLQEGLNKLAQSDPLCVVERNDKGQNTIACAGSLHLEICLKDLQDQY-AKVPIIADDPLVTYFEGISCAVSDSKMTKSANKHNRIYMTVEPLDQNIVDNLKDVK---SDQAKTMATNFREKLDIRDDWIRKIWCYAPEVNPLNLLVDGTKGISIINEIKEHV 671
BLAST of CF831988 vs. ExPASy Swiss-Prot
Match: EF2_AERPE (Elongation factor 2 OS=Aeropyrum pernix GN=fusA PE=3 SV=1) HSP 1 Score: 174.481 bits (441), Expect = 4.947e-43 Identity = 93/234 (39.74%), Postives = 143/234 (61.11%), Query Frame = 2 Query: 5 IWMGKKQETVEDVPCGNTVAMVGLDQFITKNATLTNEKEVDAHPIRAMKFSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMVVCTI-EESGEHIVAGAGELHLEICLKDLQDDFMGGAEIIKSDPVVSFRETVLEKSCRTVMSKSPNKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKARSKILSEEFGWDKDLAKKIWCFGPETTGPNMFVDMCKGVQYLNEIKDSVVA 703 I+MG +E +++P GN A++G + ++ E +A P ++++ PVV +AV+ DLPK++E L++L DP +V I EE+GE++++G G LHLEI L L++ F G E+ S P+V +RETV ++S R KSPNKHN+LY+ PL E I +G + DPK R++IL+++ GWD + A+KIW N+FVD GVQYL E+KD+++A Sbjct: 341 IYMGPFREVTKEIPAGNIGAVMGFEDVRAGETVVSLGYEENAAPFESLRYVSEPVVTIAVEPVKIQDLPKMIEALRKLTIEDPNLVVKINEETGEYLLSGMGPLHLEIALTMLREKF--GVEVKASPPIVVYRETVRQQS-RVFEGKSPNKHNKLYISVEPLNEETITLIQNGAVTEDQDPKDRARILADKAGWDYNEARKIWAIDENI---NVFVDKTAGVQYLREVKDTIIA 568
BLAST of CF831988 vs. ExPASy Swiss-Prot
Match: EF2_IGNH4 (Elongation factor 2 OS=Ignicoccus hospitalis (strain KIN4/I / DSM 18386 / JCM 14125) GN=fusA PE=3 SV=1) HSP 1 Score: 172.17 bits (435), Expect = 2.455e-42 Identity = 95/234 (40.60%), Postives = 141/234 (60.26%), Query Frame = 2 Query: 5 IWMGKKQETVEDVPCGNTVAMVGLDQFITKNATLTNEKEVDAHPIRAMKFSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMVVCTI-EESGEHIVAGAGELHLEICLKDLQDDFMGGAEIIKSDPVVSFRETVLEKSCRTVMSKSPNKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKARSKILSEEFGWDKDLAKKIWCFGPETTGPNMFVDMCKGVQYLNEIKDSVVA 703 I+MG +E V+ V GN VAM+GLD + + A P + + PVV VA++ K DLPKL+E L+ L+ DP + TI +E+GE++++G G LH+EI L L++ + G E+ S PV+++RETV K V KSPNKHN+LY+ PLE+ + E I G I DP+ R+K+L ++ WD D A++IW E N+F+D GVQ+L E+KD+++A Sbjct: 344 IYMGPDREIVDYVTAGNIVAMLGLDDARAGETLVDINYKDQAAPFEQLHYVSEPVVTVAIEPKNPRDLPKLIEALRTLSIEDPNLKVTINQETGEYLLSGMGMLHIEIALTQLKEVY--GLEVKVSPPVITYRETV-RKPGEKVEGKSPNKHNKLYITVEPLEKEVIEMIQKGEITDDQDPRERAKVLRDKVNWDADTARRIWAVDEENF--NIFIDKTVGVQHLREVKDTILA 572
BLAST of CF831988 vs. ExPASy Swiss-Prot
Match: EF2_STAMF (Elongation factor 2 OS=Staphylothermus marinus (strain ATCC 43588 / DSM 3639 / F1) GN=fusA PE=3 SV=1) HSP 1 Score: 171.4 bits (433), Expect = 4.188e-42 Identity = 90/233 (38.63%), Postives = 142/233 (60.94%), Query Frame = 2 Query: 5 IWMGKKQETVEDVPCGNTVAMVGLDQFITKNATLTNEKEVDAHPIRAMKFSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMVVCTI-EESGEHIVAGAGELHLEICLKDLQDDFMGGAEIIKSDPVVSFRETVLEKSCRTVMSKSPNKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKARSKILSEEFGWDKDLAKKIWCFGPETTGPNMFVDMCKGVQYLNEIKDSVV 700 ++MG +E +++ GN A++GLD+ + E + P ++ PVV VA++ K DLPKL++ L +L+ DP +V I EE+GE++++G G LH+EI L L++++ G ++I S P++ +RE++ +KS R KSPNKHN+LY+ PL+E I DG I DPK R+K+L EE GW D A++IW N+FVD+ GVQ+L E+KD+++ Sbjct: 341 LYMGPYRELADEIVAGNIAAVLGLDKARAGETVVAVEYKDMMTPFEKLRMISEPVVTVAIEPKNPRDLPKLIDALHKLSIEDPSLVVRINEETGEYLLSGMGPLHIEIALTFLKENY--GLDVIASQPIIVYRESIRDKS-RVFEGKSPNKHNKLYISVEPLDEKTISLIHDGIITEDMDPKQRAKVLREEAGWPTDQARRIWAIDENI---NVFVDLTTGVQHLREVKDTII 567
BLAST of CF831988 vs. ExPASy Swiss-Prot
Match: EF2_METPE (Elongation factor 2 OS=Methanosphaerula palustris (strain ATCC BAA-1556 / DSM 19958 / E1-9c) GN=fusA PE=3 SV=1) HSP 1 Score: 164.466 bits (415), Expect = 5.119e-40 Identity = 98/233 (42.06%), Postives = 142/233 (60.94%), Query Frame = 2 Query: 5 IWMGKKQETVEDVPCGNTVAMVGLDQFITKNATLTNEKEVDAHPIRAMKFSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMVVCTI-EESGEHIVAGAGELHLEICLKDLQDDFMGGAEIIKSDPVVSFRETVLEKSCRTVMSKSPNKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKARSKILSEEFGWDKDLAKKIWCFGPETTGPNMFVDMCKGVQYLNEIKDSVV 700 I+MG + VE++P GN A+ GL I +T+TN +E+ P A+ PV+ VAV+ K DLPKLVE L+++AK DP +V TI EE+GEH+++G GELHLEI ++ D G EI+ S+P+V +RET K+ + KSPN+HNR Y+E PL++ + + I +G + R IL GW+KD AK I + + N+F+DM KGVQYLNE + ++ Sbjct: 341 IFMGPTRVEVEELPAGNIAAVTGLKDAIV-GSTVTNLREMV--PFEALTHYSEPVMTVAVEAKNMKDLPKLVEVLRQVAKEDPTLVITINEETGEHLISGMGELHLEIITGRIKRD--KGVEIVTSEPIVVYRETATRKA-GPIEGKSPNRHNRFYVELEPLDQVIVDLIRNGEVSMNQTWIERRDILVAN-GWEKDEAKNI----KDISTTNIFIDMTKGVQYLNETMELIL 562
BLAST of CF831988 vs. ExPASy Swiss-Prot
Match: U5S1_MOUSE (116 kDa U5 small nuclear ribonucleoprotein component OS=Mus musculus GN=Eftud2 PE=2 SV=1) HSP 1 Score: 161.77 bits (408), Expect = 3.318e-39 Identity = 90/240 (37.50%), Postives = 145/240 (60.42%), Query Frame = 2 Query: 2 RIWMGKKQETVE--DVPCGNTVAMVGLDQFITKNATLTNEK-EVDAHPIRAMKFSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMVVCTIEESGEHIVAGAGELHLEICLKDLQDDFMGGAEIIKSDPVVSFRETVLEKSCRTVMSKSPNKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKARSKILSEEFGWDKDLAKKIWCFGPETTGPNMFVDMCKGVQ----YLNEIKDSVV 700 R+W+ + +E VP GN V + G+DQ I K AT+T + +A R +KF+ + V+++AV+ S+LPK+++GL+++ KS P + +EESGEH++ G GEL+L+ + DL+ + +I +DPVV+F ETV+E S +++PNK N++ M A PLE+GLAE I++ + + K + ++ WD A+ IW FGP+ TGPN+ VD + L +KDS+V Sbjct: 528 RLWISVARYHIEVNRVPAGNWVLIEGVDQPIVKTATITEPRGNEEAQIFRPLKFNTTSVIKIAVEPVNPSELPKMLDGLRKVNKSYPSLTTKVEESGEHVILGTGELYLDCVMHDLRKMY-SEIDIKVADPVVTFCETVVETSSLKCFAETPNKKNKITMIAEPLEKGLAEDIENEVVQITWNRKKLGEFFQTKYDWDLLAARSIWAFGPDATGPNILVDDTLPSEVDKALLGSVKDSIV 766
BLAST of CF831988 vs. ExPASy Swiss-Prot
Match: U5S1_HUMAN (116 kDa U5 small nuclear ribonucleoprotein component OS=Homo sapiens GN=EFTUD2 PE=1 SV=1) HSP 1 Score: 161.77 bits (408), Expect = 3.318e-39 Identity = 90/240 (37.50%), Postives = 145/240 (60.42%), Query Frame = 2 Query: 2 RIWMGKKQETVE--DVPCGNTVAMVGLDQFITKNATLTNEK-EVDAHPIRAMKFSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMVVCTIEESGEHIVAGAGELHLEICLKDLQDDFMGGAEIIKSDPVVSFRETVLEKSCRTVMSKSPNKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKARSKILSEEFGWDKDLAKKIWCFGPETTGPNMFVDMCKGVQ----YLNEIKDSVV 700 R+W+ + +E VP GN V + G+DQ I K AT+T + +A R +KF+ + V+++AV+ S+LPK+++GL+++ KS P + +EESGEH++ G GEL+L+ + DL+ + +I +DPVV+F ETV+E S +++PNK N++ M A PLE+GLAE I++ + + K + ++ WD A+ IW FGP+ TGPN+ VD + L +KDS+V Sbjct: 529 RLWISVARYHIEVNRVPAGNWVLIEGVDQPIVKTATITEPRGNEEAQIFRPLKFNTTSVIKIAVEPVNPSELPKMLDGLRKVNKSYPSLTTKVEESGEHVILGTGELYLDCVMHDLRKMY-SEIDIKVADPVVTFCETVVETSSLKCFAETPNKKNKITMIAEPLEKGLAEDIENEVVQITWNRKKLGEFFQTKYDWDLLAARSIWAFGPDATGPNILVDDTLPSEVDKALLGSVKDSIV 767
BLAST of CF831988 vs. ExPASy Swiss-Prot
Match: U5S1_BOVIN (116 kDa U5 small nuclear ribonucleoprotein component OS=Bos taurus GN=EFTUD2 PE=2 SV=1) HSP 1 Score: 161.77 bits (408), Expect = 3.318e-39 Identity = 90/240 (37.50%), Postives = 145/240 (60.42%), Query Frame = 2 Query: 2 RIWMGKKQETVE--DVPCGNTVAMVGLDQFITKNATLTNEK-EVDAHPIRAMKFSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMVVCTIEESGEHIVAGAGELHLEICLKDLQDDFMGGAEIIKSDPVVSFRETVLEKSCRTVMSKSPNKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKARSKILSEEFGWDKDLAKKIWCFGPETTGPNMFVDMCKGVQ----YLNEIKDSVV 700 R+W+ + +E VP GN V + G+DQ I K AT+T + +A R +KF+ + V+++AV+ S+LPK+++GL+++ KS P + +EESGEH++ G GEL+L+ + DL+ + +I +DPVV+F ETV+E S +++PNK N++ M A PLE+GLAE I++ + + K + ++ WD A+ IW FGP+ TGPN+ VD + L +KDS+V Sbjct: 529 RLWISVARYHIEVNRVPAGNWVLIEGVDQPIVKTATITEPRGNEEAQIFRPLKFNTTSVIKIAVEPVNPSELPKMLDGLRKVNKSYPSLTTKVEESGEHVILGTGELYLDCVMHDLRKMY-SEIDIKVADPVVTFCETVVETSSLKCFAETPNKKNKITMIAEPLEKGLAEDIENEVVQITWNRKKLGEFFQTKYDWDLLAARSIWAFGPDATGPNILVDDTLPSEVDKALLGSVKDSIV 767
BLAST of CF831988 vs. ExPASy Swiss-Prot
Match: U5S1_CHICK (116 kDa U5 small nuclear ribonucleoprotein component OS=Gallus gallus GN=EFTUD2 PE=2 SV=1) HSP 1 Score: 161.384 bits (407), Expect = 4.334e-39 Identity = 90/240 (37.50%), Postives = 145/240 (60.42%), Query Frame = 2 Query: 2 RIWMGKKQETVE--DVPCGNTVAMVGLDQFITKNATLTNEK-EVDAHPIRAMKFSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMVVCTIEESGEHIVAGAGELHLEICLKDLQDDFMGGAEIIKSDPVVSFRETVLEKSCRTVMSKSPNKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKARSKILSEEFGWDKDLAKKIWCFGPETTGPNMFVDMCKGVQ----YLNEIKDSVV 700 R+W+ + +E VP GN V + G+DQ I K AT+T + +A R +KF+ + V+++AV+ S+LPK+++GL+++ KS P + +EESGEH++ G GEL+L+ + DL+ + +I +DPVV+F ETV+E S +++PNK N++ M A PLE+GLAE I++ + + K + ++ WD A+ IW FGP+ TGPN+ VD + L +KDS+V Sbjct: 529 RLWISVARYHIEVNRVPAGNWVLIEGVDQPIVKTATVTEPRGNEEAQIFRPLKFNTTSVIKIAVEPVNPSELPKMLDGLRKVNKSYPSLTTKVEESGEHVILGTGELYLDCVMHDLRKMY-SEIDIKVADPVVTFCETVVETSSLKCFAETPNKKNKITMIAEPLEKGLAEDIENEVVQITWNRKKLGEFFQTKYDWDLLAARSIWAFGPDATGPNILVDDTLPSEVDKALLGSVKDSIV 767
BLAST of CF831988 vs. ExPASy Swiss-Prot
Match: U5S1_PONAB (116 kDa U5 small nuclear ribonucleoprotein component OS=Pongo abelii GN=EFTUD2 PE=2 SV=1) HSP 1 Score: 160.999 bits (406), Expect = 5.660e-39 Identity = 90/240 (37.50%), Postives = 144/240 (60.00%), Query Frame = 2 Query: 2 RIWMGKKQETVE--DVPCGNTVAMVGLDQFITKNATLTNEK-EVDAHPIRAMKFSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMVVCTIEESGEHIVAGAGELHLEICLKDLQDDFMGGAEIIKSDPVVSFRETVLEKSCRTVMSKSPNKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKARSKILSEEFGWDKDLAKKIWCFGPETTGPNMFVDMCKGVQ----YLNEIKDSVV 700 R+W+ + +E VP GN V + G+DQ I K AT+T + +A R +KF+ + V+++AV+ S+LPK+++GL+++ KS P + +EESGEH++ G GEL+L+ + DL + +I +DPVV+F ETV+E S +++PNK N++ M A PLE+GLAE I++ + + K + ++ WD A+ IW FGP+ TGPN+ VD + L +KDS+V Sbjct: 529 RLWISVARYHIEVNRVPAGNWVLIEGVDQPIVKTATITEPRGNEEAQIFRPLKFNTTSVIKIAVEPVNPSELPKMLDGLRKVNKSYPSLTTKVEESGEHVILGTGELYLDCVMHDLPKMY-SEIDIKVADPVVTFCETVVETSSLKCFAETPNKKNKITMIAEPLEKGLAEDIENEVVQITWNRKKLGEFFQTKYDWDLLAARSIWAFGPDATGPNILVDDTLPSEVDKALLGSVKDSIV 767 The following BLAST results are available for this feature:
BLAST of CF831988 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 409
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Sequences
The
following sequences are available for this feature:
EST sequence >CF831988 ID=CF831988; Name=CF831988; organism=Citrus sinensis; type=EST; length=704bpback to top |