CF831988

Overview
NameCF831988
Unique NameCF831988
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length704
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF831988 vs. ExPASy Swiss-Prot
Match: EFG_THEP1 (Elongation factor G OS=Thermotoga petrophila (strain RKU-1 / ATCC BAA-488 / DSM 13995) GN=fusA PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.241e-11
Identity = 59/178 (33.15%), Postives = 89/178 (50.00%), Query Frame = 2
Query:   20 KQETVEDVPCGNTVAMVGLDQFITKNATLTNEKEVDAHPIRAMKFSV-SPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMVVCTIE-ESGEHIVAGAGELHLEICLKDLQDDFMGGAEIIKSDPVVSFRETVLE------KSCRTVMSKSPNKHNRLYMEARPLEEGLAEAIDDGRIG 529
            K+E V+ V  G+  A VGL    T + TL +EKE    P+   K     PV+ +A++    +D  KLV+ L  L++ DP +   ++ E+GE I++G GELHLEI +  L+ +F  G  +    P V++RET+        K  R    +    H  L +E  P EEG      D  +G
Sbjct:  365 KREEVDYVRPGDIAAGVGLKVSQTGD-TLCDEKE----PVILEKIDFPEPVISLAIEPATKADEEKLVKALLALSEEDPTLQVRVDKETGETIISGMGELHLEIVVDRLKREF--GVNVRVGQPQVAYRETIKRPAEAEGKYIRQTGGRGQYGHVILRIEPIPEEEGKNFEFIDKTVG 535          
BLAST of CF831988 vs. ExPASy Swiss-Prot
Match: EFG_RHIME (Elongation factor G OS=Rhizobium meliloti GN=fusA PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.241e-11
Identity = 47/133 (35.34%), Postives = 73/133 (54.89%), Query Frame = 2
Query:   23 QETVEDVPCGNTVAMVGLDQFITKNATLTNEKEVDAHPIRAMKFSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMV-VCTIEESGEHIVAGAGELHLEICLKDLQDDFMGGAEIIKSDPVVSFRETVLEK 418
            +E +E+   G+ VA+ GL +  T +      K V    +  M+F   PV+++A++ K   D  K+   L RLA  DP   V T EESG+ I+AG GELHL+I +  ++ +F   A +    P V++RET+  K
Sbjct:  368 REDIEEAFAGDIVALAGLKETTTGDTLCDPLKPVI---LERMEFP-EPVIQIAIEPKTKGDQEKMGLALNRLAAEDPSFRVKTDEESGQTIIAGMGELHLDIIVDRMRREFKVEASV--GAPQVAYRETITRK 494          
BLAST of CF831988 vs. ExPASy Swiss-Prot
Match: EFG_LEPIN (Elongation factor G OS=Leptospira interrogans GN=fusA PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.241e-11
Identity = 49/168 (29.17%), Postives = 85/168 (50.60%), Query Frame = 2
Query:   20 KQETVEDVPCGNTVAMVGLDQFITKNATLTNEK-EVDAHPIRAMKFSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMVVCTIE-ESGEHIVAGAGELHLEICLKDLQDDFMGGAEIIKSDPVVSFRETVLEKS----CRTVMSKSPNKHNRL--YMEARPLEEGL 499
            + E ++    G+ +A+ G+D       T T+ K +V    +    F  +PV+ + ++ K +  L  L + L R  K DP     ++ ESG+ I+ G GELHLE+ ++ ++ ++  G E+I   P V++RET+  K+         +    +  R+  YME  PLEE L
Sbjct:  369 EMEDIDSAEAGDIIALFGID--CASGDTFTDGKLKVSMESM----FVPAPVISLTIEAKESKHLNNLAKALNRFTKEDPTFQTHVDQESGQTIIKGMGELHLEVYIERMKREY--GVELITGAPQVAYRETITSKADFDYTHKKQTGGQGQFGRVAGYMEPIPLEETL 528          
BLAST of CF831988 vs. ExPASy Swiss-Prot
Match: EFG_LEPIC (Elongation factor G OS=Leptospira interrogans serogroup Icterohaemorrhagiae serovar copenhageni GN=fusA PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.241e-11
Identity = 49/168 (29.17%), Postives = 85/168 (50.60%), Query Frame = 2
Query:   20 KQETVEDVPCGNTVAMVGLDQFITKNATLTNEK-EVDAHPIRAMKFSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMVVCTIE-ESGEHIVAGAGELHLEICLKDLQDDFMGGAEIIKSDPVVSFRETVLEKS----CRTVMSKSPNKHNRL--YMEARPLEEGL 499
            + E ++    G+ +A+ G+D       T T+ K +V    +    F  +PV+ + ++ K +  L  L + L R  K DP     ++ ESG+ I+ G GELHLE+ ++ ++ ++  G E+I   P V++RET+  K+         +    +  R+  YME  PLEE L
Sbjct:  369 EMEDIDSAEAGDIIALFGID--CASGDTFTDGKLKVSMESM----FVPAPVISLTIEAKESKHLNNLAKALNRFTKEDPTFQTHVDQESGQTIIKGMGELHLEVYIERMKREY--GVELITGAPQVAYRETITSKADFDYTHKKQTGGQGQFGRVAGYMEPIPLEETL 528          
BLAST of CF831988 vs. ExPASy Swiss-Prot
Match: EFG_LEPBL (Elongation factor G OS=Leptospira borgpetersenii serovar Hardjo-bovis (strain L550) GN=fusA PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.241e-11
Identity = 49/168 (29.17%), Postives = 85/168 (50.60%), Query Frame = 2
Query:   20 KQETVEDVPCGNTVAMVGLDQFITKNATLTNEK-EVDAHPIRAMKFSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMVVCTIE-ESGEHIVAGAGELHLEICLKDLQDDFMGGAEIIKSDPVVSFRETVLEKS----CRTVMSKSPNKHNRL--YMEARPLEEGL 499
            + E ++    G+ +A+ G+D       T T+ K +V    +    F  +PV+ + ++ K +  L  L + L R  K DP     ++ ESG+ I+ G GELHLE+ ++ ++ ++  G E+I   P V++RET+  K+         +    +  R+  YME  PLEE L
Sbjct:  369 EMEDIDSAEAGDIIALFGID--CASGDTFTDGKLKVSMESM----FVPAPVISLTIEAKESKHLNNLAKALNRFTKEDPTFQTHVDPESGQTIIKGMGELHLEVYIERMKREY--GVELITGAPQVAYRETITSKADFDYTHKKQTGGQGQFGRVAGYMEPIPLEETL 528          
BLAST of CF831988 vs. ExPASy Swiss-Prot
Match: EFG_LEPBJ (Elongation factor G OS=Leptospira borgpetersenii serovar Hardjo-bovis (strain JB197) GN=fusA PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.241e-11
Identity = 49/168 (29.17%), Postives = 85/168 (50.60%), Query Frame = 2
Query:   20 KQETVEDVPCGNTVAMVGLDQFITKNATLTNEK-EVDAHPIRAMKFSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMVVCTIE-ESGEHIVAGAGELHLEICLKDLQDDFMGGAEIIKSDPVVSFRETVLEKS----CRTVMSKSPNKHNRL--YMEARPLEEGL 499
            + E ++    G+ +A+ G+D       T T+ K +V    +    F  +PV+ + ++ K +  L  L + L R  K DP     ++ ESG+ I+ G GELHLE+ ++ ++ ++  G E+I   P V++RET+  K+         +    +  R+  YME  PLEE L
Sbjct:  369 EMEDIDSAEAGDIIALFGID--CASGDTFTDGKLKVSMESM----FVPAPVISLTIEAKESKHLNNLAKALNRFTKEDPTFQTHVDPESGQTIIKGMGELHLEVYIERMKREY--GVELITGAPQVAYRETITSKADFDYTHKKQTGGQGQFGRVAGYMEPIPLEETL 528          
BLAST of CF831988 vs. ExPASy Swiss-Prot
Match: EFG_LEGPL (Elongation factor G OS=Legionella pneumophila (strain Lens) GN=fusA PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.241e-11
Identity = 55/163 (33.74%), Postives = 91/163 (55.83%), Query Frame = 2
Query:   23 QETVEDVPCGNTVAMVGLDQFITKNATLTNEKEVDAHPIRAMKFSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMV-VCTIEESGEHIVAGAGELHLEICLKDLQDDFMGGAEIIKSDPVVSFRETV---LEKSCRTV-MSKSPNKHNRLYMEARPLEEG 496
            +E +++V  G+  A VGL + +T   TL ++ +V    +  M F   PV+ VAV+ K  +D  K+   L +LA+ DP   V T EESG+ I+ G GELHLEI +  ++ +F   A + K  P V++RET+   +E+  + V  S    ++  ++++  P E G
Sbjct:  367 REEIKEVRAGDIAAAVGL-KTVTTGDTLCDQDKVVI--LERMDFP-DPVIAVAVEPKTKADQEKMGIALGKLAQEDPSFRVHTDEESGQTIIQGMGELHLEIIVDRMKREFNVEANVGK--PQVAYRETLKQAIEQEGKFVRQSGGRGQYGHVWLKIEPQEPG 523          
BLAST of CF831988 vs. ExPASy Swiss-Prot
Match: EFG_LARHH (Elongation factor G OS=Laribacter hongkongensis (strain HLHK9) GN=fusA PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.241e-11
Identity = 49/130 (37.69%), Postives = 72/130 (55.38%), Query Frame = 2
Query:   23 QETVEDVPCGNTVAMVGLDQFITKNATLTNEKEVDAHPIRAMKFSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMV-VCTIEESGEHIVAGAGELHLEICLKDLQDDFMGGAEIIKSDPVVSFRETV 409
            ++ +++V  G+  A +GL   +T   TL     VDA  I        PV+ VAV+ K  +D  K+   L RLA+ DP   V T EESG+ I++G GELHLEI +  ++ +F  G E     P V++RET+
Sbjct:  368 RKEIDEVRAGDIAAAIGLKD-VTTGETLC---AVDAPIILERMEFPEPVIHVAVEPKTKADQEKMGIALGRLAREDPSFRVRTDEESGQTIISGMGELHLEIIVDRMKREF--GVEANVGAPQVAYRETI 491          
BLAST of CF831988 vs. ExPASy Swiss-Prot
Match: EFG_EDWI9 (Elongation factor G OS=Edwardsiella ictaluri (strain 93-146) GN=fusA PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.241e-11
Identity = 53/165 (32.12%), Postives = 87/165 (52.73%), Query Frame = 2
Query:   20 KQETVEDVPCGNTVAMVGLDQFITKNATLTNEKEVDAHPIRAMKFSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMV-VCTIEESGEHIVAGAGELHLEICLKDLQDDFMGGAEIIKSDPVVSFRETVLE-----KSCRTVMSKSPNKHNRLYMEARPLEEG 496
            K+E +++V  G+  A +GL   +T   TL ++       +  M+F   PV+ +AV+ K  +D  K+   L RLAK DP   V T EES + I++G GELHLEI +  ++ +F   A + K  P V++RET+ +     +      S    ++  + ++  PLE G
Sbjct:  370 KREEIKEVRAGDIAAAIGLKD-VTTGDTLCDQNAPII--LERMEFP-EPVISIAVEPKTKADQEKMGLALGRLAKEDPSFRVRTDEESNQTIISGMGELHLEIIVDRMKREFNVEANVGK--PQVAYRETIRDTVKDVEGKHAKQSGGRGQYGHVVIDMFPLEPG 528          
BLAST of CF831988 vs. ExPASy Swiss-Prot
Match: EFG_CHLTE (Elongation factor G OS=Chlorobium tepidum GN=fusA-1 PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.241e-11
Identity = 59/181 (32.60%), Postives = 92/181 (50.83%), Query Frame = 2
Query:   20 KQETVEDVPCGNTVAMVGLDQFITKNATLTNEKEVDAHPIRAMKFSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMV-VCTIEESGEHIVAGAGELHLEICLKDLQDDFMGGAEIIKSDPVVSFRETV---LEKSCRTV-MSKSPNKHNRLYMEARPLEEGLA-EAIDD--GRIGPRD 538
            K+E  + V  G+  A VGL    T +      K +    +  M F   PV+ +AV+ K  +D  KL   L +LA+ DP   V T EE+G+ ++AG GELHLEI +  L+ +F   A +    P V++RET+   +E   + V  S    +   + +   PLEEG   E +D+  G + P++
Sbjct:  370 KREERDAVYAGDIAAAVGLKDVRTGDTLCDESKPI---VLEKMVFP-EPVIEIAVEPKTKADNDKLGMSLAKLAEEDPTFRVKTDEETGQTLIAGMGELHLEILVDRLKREFKVEANV--GQPQVAYRETIRGTVEYEGKFVRQSGGKGQFGLVVLRVEPLEEGKGYEFVDEIKGGVIPKE 544          
The following BLAST results are available for this feature:
BLAST of CF831988 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 409
Match NameE-valueIdentityDescription
EFG_THEP12.241e-1133.15Elongation factor G OS=Thermotoga petrophila (stra... [more]
EFG_RHIME2.241e-1135.34Elongation factor G OS=Rhizobium meliloti GN=fusA ... [more]
EFG_LEPIN2.241e-1129.17Elongation factor G OS=Leptospira interrogans GN=f... [more]
EFG_LEPIC2.241e-1129.17Elongation factor G OS=Leptospira interrogans sero... [more]
EFG_LEPBL2.241e-1129.17Elongation factor G OS=Leptospira borgpetersenii s... [more]
EFG_LEPBJ2.241e-1129.17Elongation factor G OS=Leptospira borgpetersenii s... [more]
EFG_LEGPL2.241e-1133.74Elongation factor G OS=Legionella pneumophila (str... [more]
EFG_LARHH2.241e-1137.69Elongation factor G OS=Laribacter hongkongensis (s... [more]
EFG_EDWI92.241e-1132.12Elongation factor G OS=Edwardsiella ictaluri (stra... [more]
EFG_CHLTE2.241e-1132.60Elongation factor G OS=Chlorobium tepidum GN=fusA-... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_01C02_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01C02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF831988 ID=CF831988; Name=CF831988; organism=Citrus sinensis; type=EST; length=704bp
CCGTATTTGGATGGGAAAGAAGCAGGAAACCGTTGAGGATGTGCCTTGTG
GTAACACTGTGGCTATGGTTGGTCTCGATCAATTCATCACTAAAAATGCT
ACCTTGACTAATGAGAAGGAAGTTGATGCCCATCCCATCCGTGCTATGAA
GTTCTCTGTCTCACCTGTTGTTCGTGTGGCTGTCCAGTGCAAAGTCGCTT
CTGATCTCCCTAAGCTTGTTGAAGGTCTTAAGCGTTTGGCCAAGTCAGAT
CCTATGGTTGTCTGTACAATTGAGGAGTCTGGCGAGCACATTGTTGCTGG
TGCGGGAGAACTTCACCTTGAGATCTGTTTGAAGGATCTGCAGGACGATT
TCATGGGAGGTGCTGAAATTATTAAATCTGATCCTGTTGTGTCCTTCCGT
GAAACTGTCCTTGAGAAGTCTTGCCGCACTGTGATGAGTAAGTCTCCCAA
CAAGCATAATCGTCTCTACATGGAAGCCCGACCTCTGGAAGAAGGTCTTG
CTGAGGCCATAGATGATGGCCGCATTGGTCCAAGGGATGATCCCAAGGCT
CGATCTAAGATCTTGTCTGAGGAGTTCGGCTGGGACAAGGATCTTGCGAA
GAAGATTTGGTGTTTTGGTCCTGAGACCACTGGCCCTAACATGTTCGTTG
ATATGTGTAAGGGAGTTCAATACTTGAATGAAATTAAGGATTCTGTTGTT
GCTG
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