CF831988

Overview
NameCF831988
Unique NameCF831988
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length704
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF831988 vs. ExPASy Swiss-Prot
Match: EFG_ROSDO (Elongation factor G OS=Roseobacter denitrificans (strain ATCC 33942 / OCh 114) GN=fusA PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.517e-11
Identity = 52/174 (29.89%), Postives = 86/174 (49.43%), Query Frame = 2
Query:   23 QETVEDVPCGNTVAMVGLDQFITKNATLTNEKEVDAHPIRAMKFSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMV-VCTIEESGEHIVAGAGELHLEICLKDLQDDFMGGAEIIKSDPVVSFRETVLEKSCRTVMSKSPNKHNRLYMEAR----PLEEGLAEAIDDGRIG 529
            +E +++   G+ +A+ GL    T +        V    +  M F   PV+ +AV+ K  +D  K+ +GL RLA  DP   V T  ESG+ I+ G GELHL+I +  L+ +F   A I    P V++RET+ +++  T   K  +  +  + E +    P E G   + +   +G
Sbjct:  377 REEIDEAFAGDIIALAGLKDTTTGDTLCAQNDPV---VLETMTFP-DPVIEIAVEPKTKNDQEKMSQGLARLAAEDPSFRVETDLESGQTIMKGMGELHLDILVDRLKREFKVEANI--GAPQVAYRETISKEAEVTYTHKKQSGGSGQFAEVKMILTPTEPGEGYSFESRIVG 544          
BLAST of CF831988 vs. ExPASy Swiss-Prot
Match: EFG_PROM4 (Elongation factor G OS=Prochlorococcus marinus (strain MIT 9211) GN=fusA PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.517e-11
Identity = 45/134 (33.58%), Postives = 71/134 (52.99%), Query Frame = 2
Query:   23 QETVEDVPCGNTVAMVGLDQFITKNATLTNEKEVDAHPIRAMKFSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMV-VCTIEESGEHIVAGAGELHLEICLKDLQDDFMGGAEIIKSDPVVSFRETVLEKS 421
            +E V+ +  G+  A++GL    T +   T ++ +    +    F   PV+ VAV+ K   D+ KL + L  LA+ DP   V T +E+ + ++AG GELHLEI +  +  +F   A I    P VS+RET+   S
Sbjct:  360 REEVDQLRAGDLGAVLGLKNTTTGDTLCTTDEPIVLETL----FIPEPVISVAVEPKTKGDMEKLSKALVSLAEEDPTFRVSTDQETNQTVIAGMGELHLEILVDRMLREFKVEANI--GAPQVSYRETIRSSS 487          
BLAST of CF831988 vs. ExPASy Swiss-Prot
Match: EFG_DESHD (Elongation factor G OS=Desulfitobacterium hafniense (strain DCB-2 / DSM 10664) GN=fusA PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.517e-11
Identity = 53/163 (32.52%), Postives = 87/163 (53.37%), Query Frame = 2
Query:   23 QETVEDVPCGNTVAMVGLDQFITKNATLTNEKEVDAHPIRAMKFSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMV-VCTIEESGEHIVAGAGELHLEICLKDLQDDFMGGAEIIKSDPVVSFRETV---LEKSCRTV-MSKSPNKHNRLYMEARPLEEG 496
            +E + +V  G+  A VGL    T + TL ++K      + +M+F   PV+ VA++ K   D  K+   L RLA+ DP   + T ++SG+ I+ G GELHLEI +  LQ +F    E     P V+++ET+   ++   + V  S    ++   ++E  PLE+G
Sbjct:  362 REEIPEVYAGDIAAAVGLKDTTTGD-TLCDDKAPII--LESMQFP-DPVINVAIEPKTKQDQEKMGTALARLAEEDPTFKMHTDQDSGQTIIEGMGELHLEIIVDRLQREFK--VECNVGRPQVAYKETIRRAVKSEGKFVRQSGGRGQYGHCWIEIEPLEQG 518          
BLAST of CF831988 vs. ExPASy Swiss-Prot
Match: EFG_DECAR (Elongation factor G OS=Dechloromonas aromatica (strain RCB) GN=fusA PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.517e-11
Identity = 58/181 (32.04%), Postives = 94/181 (51.93%), Query Frame = 2
Query:   20 KQETVEDVPCGNTVAMVGLDQFITKNATLTNEKEVDAHPIRAMKFSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMV-VCTIEESGEHIVAGAGELHLEICLKDLQDDFMGGAEIIKSDPVVSFRETV---LEKSCRTV-MSKSPNKHNRLYMEARPLEEGLA-EAID--DGRIGPRD 538
            ++E +++V  G+  A VGL +  T +      K +    +  M F   PV+ VAV+ K  +D  K+   L RLA+ DP   V T EESG+ I++G GELHLEI +  ++ +F   A +    P V++RE +   +E+  + V  S    +   ++++  P E G   E ID   G + PR+
Sbjct:  368 QREEIKEVRAGDIAAAVGLKEATTGDTLCDPAKVIT---LERMVFP-EPVIHVAVEPKTKADQEKMGLALGRLAQEDPSFRVRTDEESGQTIISGMGELHLEILVDRMRREFNVDASV--GAPQVAYRECIKKSVEQEGKFVKQSGGRGQFGHVWLKIEPNEAGKGYEFIDAIKGGVVPRE 542          
BLAST of CF831988 vs. ExPASy Swiss-Prot
Match: EFG_AGRT5 (Elongation factor G OS=Agrobacterium tumefaciens (strain C58 / ATCC 33970) GN=fusA PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.517e-11
Identity = 46/130 (35.38%), Postives = 71/130 (54.62%), Query Frame = 2
Query:   23 QETVEDVPCGNTVAMVGLDQFITKNATLTNEKEVDAHPIRAMKFSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMV-VCTIEESGEHIVAGAGELHLEICLKDLQDDFMGGAEIIKSDPVVSFRETV 409
            +E +E+   G+ VA+ GL +  T +      K V    +  M+F   PV+++A++ K   D  K+   L RLA  DP   V T EESG+ I+AG GELHL+I +  ++ +F    E     P V++RET+
Sbjct:  368 REDIEEAFAGDIVALAGLKETTTGDTLCDPLKPVI---LERMEFP-EPVIQIAIEPKTKGDQEKMGLALNRLAAEDPSFRVKTDEESGQTIIAGMGELHLDILVDRMRREFK--VEATVGAPQVAYRETI 491          
BLAST of CF831988 vs. ExPASy Swiss-Prot
Match: EFG2_RALEJ (Elongation factor G 2 OS=Ralstonia eutropha (strain JMP134) GN=fusA2 PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.517e-11
Identity = 46/130 (35.38%), Postives = 71/130 (54.62%), Query Frame = 2
Query:   23 QETVEDVPCGNTVAMVGLDQFITKNATLTNEKEVDAHPIRAMKFSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMV-VCTIEESGEHIVAGAGELHLEICLKDLQDDFMGGAEIIKSDPVVSFRETV 409
            ++ +++V  G+  A VGL +  T +      K +    +  M F   PV+  AV+ K  +D  K+   L RLA+ DP   V T EESG+ I++G GELHLEI +  ++ +F  G E     P V++RET+
Sbjct:  369 RQEIKEVRAGDIAAAVGLKEATTGDTLCDPGKVII---LERMSFP-EPVISQAVEPKTKADQEKMGIALNRLAQEDPSFRVTTDEESGQTIISGMGELHLEILVDRMRREF--GVEASVGKPQVAYRETI 492          
BLAST of CF831988 vs. ExPASy Swiss-Prot
Match: EFG2_MYXXD (Elongation factor G 2 OS=Myxococcus xanthus (strain DK 1622) GN=fusA2 PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.517e-11
Identity = 49/131 (37.40%), Postives = 77/131 (58.78%), Query Frame = 2
Query:   20 KQETVEDVPCGNTVAMVGLDQFITKNATLTNEKEVDAHPIRAMKFSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMV-VCTIEESGEHIVAGAGELHLEICLKDLQDDFMGGAEIIKSDPVVSFRETV 409
            K++ + +   G+  A+VGL    T + TL ++K+     +  M F   PV+ +A++ K  +D  K+++ L+RLA  DP   V T EE+G+ ++AG GELHLEI +  L  +F   A I K  P V++RETV
Sbjct:  367 KKDEITECYAGDICAVVGLKLAGTGD-TLCDDKQPII--LERMDFP-EPVIDIAIEPKSTADQDKILQSLQRLAMEDPSFRVRTNEETGQTLIAGMGELHLEIIVDRLLREFKVDANIGK--PQVAYRETV 491          
BLAST of CF831988 vs. ExPASy Swiss-Prot
Match: EFG2_BORA1 (Elongation factor G 2 OS=Bordetella avium (strain 197N) GN=fusA2 PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.517e-11
Identity = 49/134 (36.57%), Postives = 74/134 (55.22%), Query Frame = 2
Query:   20 KQETVEDVPCGNTVAMVGLDQFITKNATLTNEKEVDAHPIRAMKFSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMV-VCTIEESGEHIVAGAGELHLEICLKDLQDDFMGGAEIIKSDPVVSFRETVLEK 418
            +++ + +V  G+  A VGL   +T   TLT+   V    +  M F   PV+  AV+ K  +D  K+   L RLA+ DP   V T EESG+ I++G GELHLEI +  ++ +F    E     P V++RET+ +K
Sbjct:  368 ERKEINEVYAGDIAAAVGLKD-VTTGDTLTDPGHVII--LERMIFP-EPVISQAVEPKTKADQEKMSLALNRLAQEDPSFRVRTDEESGQTIISGMGELHLEILVDRMKREF--NVEATVGKPQVAYRETIRKK 495          
BLAST of CF831988 vs. ExPASy Swiss-Prot
Match: EFG1_SHEON (Elongation factor G 1 OS=Shewanella oneidensis GN=fusA PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.517e-11
Identity = 55/189 (29.10%), Postives = 97/189 (51.32%), Query Frame = 2
Query:   32 VEDVPCGNTVAMVGLDQFITKNATLTNEKEVDAHPIRAMKFSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMV-VCTIEESGEHIVAGAGELHLEICLKDLQDDFMGGAEIIKSDPVVSFRETV---LEKSCRTV-MSKSPNKHNRLYMEARPLEEGLAEAIDDGRIG---PRDDPKARSKILSEE 574
            +++V  G+  A +GL +  T +    N+ +V    +  M+F   PV+ +AV+ K  +D  K+   L++LA  DP   V T EES + +++G GELHL+I +  ++ +F  G E     P V++RET+   +E   + V  S    +   ++++  P EEG      +  +G   PR+   A  K + E+
Sbjct:  372 LKEVRAGDIAAAIGLKEVTTGDTLCDNDHKVI---LERMEFP-EPVITIAVEPKSKADQDKMGIALQKLAAEDPSFRVETDEESSQTLISGMGELHLDIIVDRMRREF--GVECNVGKPQVAYRETIRGSVEAEGKFVRQSGGRGQFGHVWLKLEPNEEGAGYEFINAIVGGVVPREFIPAVDKGIQEQ 554          
The following BLAST results are available for this feature:
BLAST of CF831988 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 409
Match NameE-valueIdentityDescription
EFG_ROSDO8.517e-1129.89Elongation factor G OS=Roseobacter denitrificans (... [more]
EFG_PROM48.517e-1133.58Elongation factor G OS=Prochlorococcus marinus (st... [more]
EFG_DESHD8.517e-1132.52Elongation factor G OS=Desulfitobacterium hafniens... [more]
EFG_DECAR8.517e-1132.04Elongation factor G OS=Dechloromonas aromatica (st... [more]
EFG_AGRT58.517e-1135.38Elongation factor G OS=Agrobacterium tumefaciens (... [more]
EFG2_RALEJ8.517e-1135.38Elongation factor G 2 OS=Ralstonia eutropha (strai... [more]
EFG2_MYXXD8.517e-1137.40Elongation factor G 2 OS=Myxococcus xanthus (strai... [more]
EFG2_BORA18.517e-1136.57Elongation factor G 2 OS=Bordetella avium (strain ... [more]
EFG1_SHEON8.517e-1129.10Elongation factor G 1 OS=Shewanella oneidensis GN=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_01C02_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01C02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF831988 ID=CF831988; Name=CF831988; organism=Citrus sinensis; type=EST; length=704bp
CCGTATTTGGATGGGAAAGAAGCAGGAAACCGTTGAGGATGTGCCTTGTG
GTAACACTGTGGCTATGGTTGGTCTCGATCAATTCATCACTAAAAATGCT
ACCTTGACTAATGAGAAGGAAGTTGATGCCCATCCCATCCGTGCTATGAA
GTTCTCTGTCTCACCTGTTGTTCGTGTGGCTGTCCAGTGCAAAGTCGCTT
CTGATCTCCCTAAGCTTGTTGAAGGTCTTAAGCGTTTGGCCAAGTCAGAT
CCTATGGTTGTCTGTACAATTGAGGAGTCTGGCGAGCACATTGTTGCTGG
TGCGGGAGAACTTCACCTTGAGATCTGTTTGAAGGATCTGCAGGACGATT
TCATGGGAGGTGCTGAAATTATTAAATCTGATCCTGTTGTGTCCTTCCGT
GAAACTGTCCTTGAGAAGTCTTGCCGCACTGTGATGAGTAAGTCTCCCAA
CAAGCATAATCGTCTCTACATGGAAGCCCGACCTCTGGAAGAAGGTCTTG
CTGAGGCCATAGATGATGGCCGCATTGGTCCAAGGGATGATCCCAAGGCT
CGATCTAAGATCTTGTCTGAGGAGTTCGGCTGGGACAAGGATCTTGCGAA
GAAGATTTGGTGTTTTGGTCCTGAGACCACTGGCCCTAACATGTTCGTTG
ATATGTGTAAGGGAGTTCAATACTTGAATGAAATTAAGGATTCTGTTGTT
GCTG
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