CF831988

Overview
NameCF831988
Unique NameCF831988
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length704
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1001 contig Csv1_Contig1001:1..704. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF831988 vs. ExPASy Swiss-Prot
Match: EF2_PYRHO (Elongation factor 2 OS=Pyrococcus horikoshii GN=fusA PE=3 SV=2)

HSP 1 Score: 151.369 bits (381), Expect = 4.485e-36
Identity = 93/235 (39.57%), Postives = 140/235 (59.57%), Query Frame = 2
Query:    5 IWMGKKQETVEDVPCGNTVAMVGLDQFITKNATLTNEKEVDAHPIRAMKFSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMVVCTI-EESGEHIVAGAGELHLEICLKDLQDDFMGGAEIIKSDPVVSFRETVLEKSCRTVMSKSPNKHNRLYMEARPLEEGLAEAIDDGRI--GPRDDPKARSKILSEEFGWDKDLAKKIWCFGPETTGPNMFVDMCKGVQYLNEIKDSVV 700
            I+MG ++  +E VP GN VA+ GL   +        + E    P  A+ +   PVV VA++ K   DLP+L+E L++LAK DP +   I EE+G+H+++G GELHLE+ L  L+ D+  G +I  S+P+V +RE++  KS   V  KSPN+HNR Y+   P+ + +  AI +G I  G   +PK  +K L+ E G D ++A+ I     +    NMF+D  KGVQYLNE+ D ++
Sbjct:  340 IYMGPERINMEAVPAGNIVAVTGLRDAMAGETVAEEQIE----PFEALHYVSEPVVTVAIEAKNVKDLPRLIEALRQLAKEDPTLHVKIDEETGQHLLSGMGELHLEVKLYKLKKDW--GIDIEVSEPIVVYRESI-TKSSPMVEGKSPNRHNRFYIVVEPMPDEIYNAIKEGIIPEGRVKNPKEVAKKLA-ELGMDYEIARGI----VDIYNGNMFIDNTKGVQYLNEVMDLLI 562          
BLAST of CF831988 vs. ExPASy Swiss-Prot
Match: EF2_PYRAR (Elongation factor 2 OS=Pyrobaculum arsenaticum (strain DSM 13514 / JCM 11321) GN=fusA PE=3 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 4.485e-36
Identity = 92/233 (39.48%), Postives = 131/233 (56.22%), Query Frame = 2
Query:    5 IWMGKKQETVEDVPCGNTVAMVGLDQFITKNATLTNEKEVDAHPIRAMKFSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMVVCTIE-ESGEHIVAGAGELHLEICLKDLQDDFMGGAEIIKSDPVVSFRETVLEKSCRTVMSKSPNKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKARSKILSEEFGWDKDLAKKIWCFGPETTGPNMFVDMCKGVQYLNEIKDSVV 700
            I+MG  +  V  +P GN VA++G+D+      TL + +  +  P   M++   PVV VA++ K  ++L KLVE LK L   DP +   I+ E+G+ +++G G LHLEI    L++      E   S P++ FRETV E+S +    KSPNKHN+LY    PL+E   E I    I    DP+ R+KIL E+ GWD D A+ IW         N+ VD   G+QYL EI+D +V
Sbjct:  344 IYMGPTRIIVPYMPAGNIVALMGVDE-ARAGDTLVDPRLTEVPPFEKMRYIAEPVVTVAIEPKNPAELAKLVEALKDLVIEDPTLDLKIDQETGQILLSGVGTLHLEIATWLLKE--RAKTEFTVSPPLIRFRETVRERS-QVWEGKSPNKHNKLYFYVEPLDETTVELIATKEITEEQDPRERAKILREKAGWDTDEARGIWAIDDRYF--NVIVDKTTGIQYLREIRDYIV 570          
BLAST of CF831988 vs. ExPASy Swiss-Prot
Match: EF2_THESM (Elongation factor 2 OS=Thermococcus sibiricus (strain MM 739 / DSM 12597) GN=fusA PE=3 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 7.650e-36
Identity = 91/235 (38.72%), Postives = 141/235 (60.00%), Query Frame = 2
Query:    5 IWMGKKQETVEDVPCGNTVAMVGLDQFITKNATLTNEKEVDAHPIRAMKFSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMVVCTI-EESGEHIVAGAGELHLEICLKDLQDDFMGGAEIIKSDPVVSFRETVLEKSCRTVMSKSPNKHNRLYMEARPLEEGLAEAIDDGRI--GPRDDPKARSKILSEEFGWDKDLAKKIWCFGPETTGPNMFVDMCKGVQYLNEIKDSVV 700
            I+MG ++  +E VP GN VA+ GL   +          E    P  A+ ++  PVV VA++ K   DLP+L+E L++LAK DP +   I EE+G+H+++G GELHLE+ L  L++ +  G ++  S+P+V +RE++ ++S   V  KSPNKHNR Y+   P+ + + +AI +G I  G   D K  +K L+ E G D ++A+ I     +    NMF+D  KG+QYLNE+ D +V
Sbjct:  340 IYMGPERINMEAVPAGNIVAVTGLRDAMAGETVA----EEPIEPFEALHYTSEPVVTVAIEAKNVKDLPRLIEALRQLAKEDPTLHVKIDEETGQHLLSGMGELHLEVKLVHLKEQW--GVDVDVSEPIVVYRESITKQS-PIVEGKSPNKHNRFYIVVEPMPDEIYQAIREGEIPEGRPKDTKVVAKKLA-ELGMDYEIARGI----VDIYNGNMFLDNTKGLQYLNEVMDLLV 562          
BLAST of CF831988 vs. ExPASy Swiss-Prot
Match: EF2_METST (Elongation factor 2 OS=Methanosphaera stadtmanae (strain DSM 3091) GN=fusA PE=3 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 7.650e-36
Identity = 90/233 (38.63%), Postives = 139/233 (59.66%), Query Frame = 2
Query:    5 IWMGKKQETVEDVPCGNTVAMVGLDQFITKNATLTNEKEVDAHPIRAMKFSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMVVCTI-EESGEHIVAGAGELHLEICLKDLQDDFMGGAEIIKSDPVVSFRETVLEKSCRTVMSKSPNKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKARSKILS---EEFGWDKDLAKKIWCFGPETTGPNMFVDMCKGVQYLNEIKD 691
            ++MG ++   + VP GN VA+ G    I    T+T + + +  P  +++    PVV VAV+ K   DLPKL+E L+++ K DP +   I EE+GEH++AG GELHLE+ +  + D    G E+  S+P+V +RET+   +   V  KSPNKHNR Y++  PL + L  AI +G I    + + + K L+   +E G DKD AKK+W    +    ++FV+  +G+QYL+EIK+
Sbjct:  340 VYMGPERINTDSVPAGNIVAITGARGAIA-GETIT-DADHNIAPFESLEHISEPVVTVAVEAKNTKDLPKLIEVLRQVGKEDPTLRVEINEETGEHLIAGMGELHLEVIIYRINDK---GLEVETSEPIVVYRETI-AGTATNVEGKSPNKHNRFYIDIEPLSDDLMNAISEGEI---PEGRVKGKELAKTFQEHGLDKDEAKKVW----DVYKHSIFVNKTRGIQYLDEIKE 559          
BLAST of CF831988 vs. ExPASy Swiss-Prot
Match: EF2_SULTO (Elongation factor 2 OS=Sulfolobus tokodaii GN=fusA PE=3 SV=3)

HSP 1 Score: 150.214 bits (378), Expect = 9.991e-36
Identity = 84/234 (35.90%), Postives = 140/234 (59.83%), Query Frame = 2
Query:    5 IWMGKKQETVEDVPCGNTVAMVGLDQFIT-KNATLTNEKEVDAHPIRAMKFSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMVVCTI-EESGEHIVAGAGELHLEICLKDLQDDFMGGAEIIKSDPVVSFRETVLEKSCRTVMSKSPNKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKARSKILSEEFGWDKDLAKKIWCFGPETTGPNMFVDMCKGVQYLNEIKDSVV 700
            ++MG  +E  E++P GN  A +GLDQ  + + A     K+ +     ++ +   PVV ++V+ K   DL K+++ L++L+  DP ++  I EE+GE++++G G LHLE+ L+ L++++  G +++ S P+V +RE++  KS +    KSPNKHN+LY+   PL E   E I +G I    D K  ++IL E+  WD D AKKI          N+FV+   GVQ+L E+ D+++
Sbjct:  342 LYMGPTRELAEEIPAGNIAAALGLDQARSGETAVDIKYKDANVGSFESLHYVSEPVVTISVEPKNPKDLNKMIDALRKLSIEDPNLLVKINEETGEYLLSGMGFLHLEVSLQLLKENY--GVDVVTSPPIVVYRESIRTKS-QVFEGKSPNKHNKLYISVEPLNEQTIELIANGTIKEDMDSKEMARILKEQADWDYDEAKKIVAIDENI---NVFVNATSGVQHLREVMDTIL 569          
BLAST of CF831988 vs. ExPASy Swiss-Prot
Match: EF2_METTH (Elongation factor 2 OS=Methanobacterium thermoautotrophicum GN=fusA PE=3 SV=2)

HSP 1 Score: 150.214 bits (378), Expect = 9.991e-36
Identity = 86/233 (36.91%), Postives = 137/233 (58.80%), Query Frame = 2
Query:    5 IWMGKKQETVEDVPCGNTVAMVGLDQFITKNATLTNEKEVDAHPIRAMKFSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMVVCTI-EESGEHIVAGAGELHLEICLKDLQDDFMGGAEIIKSDPVVSFRETVLEKSCRTVMSKSPNKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKARSKILSEEF---GWDKDLAKKIWCFGPETTGPNMFVDMCKGVQYLNEIKD 691
            ++MG ++   + VP GN VA+ G    +         +++ A     ++    PVV VAV+ K   DLPKL+E L+++ K DP V   I EE+GEH+++G GELHLEI    + +    G EI  S+P+V +RETV   +   V  KSPNKHNR Y+E  P+E  + +AI +G+I    + + + K +++ F   G DK+ A+++W    +    N+F++M +G+QYL+EIK+
Sbjct:  340 VYMGPERVNTDKVPAGNIVAITGAKNAVAGETICDTGRKIKA--FEGLEHISEPVVTVAVEAKNTKDLPKLIEVLRQVGKEDPTVRVEINEETGEHLISGMGELHLEIIAYRINEK---GVEIETSEPIVVYRETVAG-TAGPVEGKSPNKHNRFYIEIEPVEASVMQAIQEGKI---KEGRVKGKEMAKNFIEAGMDKEEARRVW----DVYEKNLFINMTRGIQYLDEIKE 559          
BLAST of CF831988 vs. ExPASy Swiss-Prot
Match: EF2_ARCFU (Elongation factor 2 OS=Archaeoglobus fulgidus GN=fusA PE=3 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 9.991e-36
Identity = 86/233 (36.91%), Postives = 136/233 (58.37%), Query Frame = 2
Query:    5 IWMGKKQETVEDVPCGNTVAMVGLDQFITKNATLTNEKEVDAHPIRAMKFSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMVVCTI-EESGEHIVAGAGELHLEICLKDLQDDFMGGAEIIKSDPVVSFRETVLEKSCRTVMSKSPNKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKARSKILSEEFGWDKDLAKKIWCFGPETTGPNMFVDMCKGVQYLNEIKDSVV 700
            ++MG ++  V+++P GN VA++GL   +  +   T E   +  P  ++K    PVV +A++ K   DLPKL+E L++LAK DP +  T+ EE+GEH+++G GELHLE+ ++ ++ D+    ++I S P+V FRETV   S   V  KSPNKHNR Y+   PL E + +   +G +  + D K R ++L E       L  +      E    N+F D+ KG+QYLNE  + ++
Sbjct:  338 LYMGPRRVEVDEIPAGNIVAVIGLKDAVAGSTCTTVE---NLTPFESIKHYSEPVVTMAIEAKNPRDLPKLIEVLRKLAKEDPTLHITLNEETGEHLISGMGELHLEVKVEKIRRDYK--LDVITSPPIVVFRETVTGTS-PVVEGKSPNKHNRFYIVVEPLPEKVIQMFKEGVVDMKMDKKERRRLLQE-----AGLTSEEAAGAEEYYEGNLFCDVTKGIQYLNETMELIL 559          
BLAST of CF831988 vs. ExPASy Swiss-Prot
Match: EF2_DESMO (Elongation factor 2 OS=Desulfurococcus mobilis GN=fusA PE=3 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 1.704e-35
Identity = 86/233 (36.91%), Postives = 131/233 (56.22%), Query Frame = 2
Query:    5 IWMGKKQETVEDVPCGNTVAMVGLDQFITKNATLTNEKEVDAHPIRAMKFSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMVVCTI-EESGEHIVAGAGELHLEICLKDLQDDFMGGAEIIKSDPVVSFRETVLEKSCRTVMSKSPNKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKARSKILSEEFGWDKDLAKKIWCFGPETTGPNMFVDMCKGVQYLNEIKDSVV 700
            ++MG  +E  +++  GN  A + L++  +    +  + +    P   ++     VV VA++ K    L KLV+ L +L   DP ++  I EE+GE++++G G LH+EI L  L+D +  G E++ S PV+ +RETV E S +    KSPNKHN+ Y+   PL E     + +G I    D + R+KIL E+ GWD D A++I          NM VDM  GVQYL EIKD+V+
Sbjct:  339 LYMGPYRELADEITAGNIAAALALEKARSGETVVAMKYKDSMTPFEKLRMITESVVTVAIEPKNPQQLTKLVDALYKLHLEDPSLIVKINEETGEYLLSGVGTLHIEIALTLLKDLY--GLEVVASPPVIVYRETVRESS-QVFEGKSPNKHNKFYISVAPLNEETLRLMSEGIIVEDMDARERAKILREQAGWDADEARRIMAIDENL---NMLVDMTTGVQYLREIKDTVI 565          
BLAST of CF831988 vs. ExPASy Swiss-Prot
Match: EF2_SULSO (Elongation factor 2 OS=Sulfolobus solfataricus GN=fusA PE=1 SV=3)

HSP 1 Score: 149.058 bits (375), Expect = 2.226e-35
Identity = 82/233 (35.19%), Postives = 137/233 (58.80%), Query Frame = 2
Query:    5 IWMGKKQETVEDVPCGNTVAMVGLDQFITKNATLTNEKEVDAHPIRAMKFSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMVVCTI-EESGEHIVAGAGELHLEICLKDLQDDFMGGAEIIKSDPVVSFRETVLEKSCRTVMSKSPNKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKARSKILSEEFGWDKDLAKKIWCFGPETTGPNMFVDMCKGVQYLNEIKDSVV 700
            ++MG  +E  E++P GN  A++GLD+  +    ++            + +   PVV +AV+ K   DL K+++ L++L+  DP +V  I EE+GE++++G G LHLE+ L+ L++++  G +++ + P+V +RE++  KS +    KSPNKHN+ Y+   PL +   E I +G I    D K  +KIL +E  WD D AK+I          N+FVD+  GVQ+L E+ D+V+
Sbjct:  342 LYMGPTRELAEEIPAGNIAAVLGLDRARSGETAISVGFSNVQGSFERLHYISEPVVTIAVEPKNPKDLTKMIDALRKLSIEDPNLVVKINEETGEYLLSGMGFLHLEVSLQLLRENY--GIDVVTTPPIVVYRESIRAKS-QVFEGKSPNKHNKFYLSVEPLNDKTIELISNGTIREDMDSKEMAKILRDEASWDYDEAKRIIAIDENV---NVFVDLTSGVQHLREVMDTVL 568          
BLAST of CF831988 vs. ExPASy Swiss-Prot
Match: EF2_SULIY (Elongation factor 2 OS=Sulfolobus islandicus (strain Y.G.57.14 / Yellowstone #1) GN=fusA PE=3 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 2.226e-35
Identity = 82/233 (35.19%), Postives = 137/233 (58.80%), Query Frame = 2
Query:    5 IWMGKKQETVEDVPCGNTVAMVGLDQFITKNATLTNEKEVDAHPIRAMKFSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMVVCTI-EESGEHIVAGAGELHLEICLKDLQDDFMGGAEIIKSDPVVSFRETVLEKSCRTVMSKSPNKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKARSKILSEEFGWDKDLAKKIWCFGPETTGPNMFVDMCKGVQYLNEIKDSVV 700
            ++MG  +E  E++P GN  A++GLD+  +    ++            + +   PVV +AV+ K   DL K+++ L++L+  DP +V  I EE+GE++++G G LHLE+ L+ L++++  G +++ + P+V +RE++  KS +    KSPNKHN+ Y+   PL +   E I +G I    D K  +KIL +E  WD D AK+I          N+FVD+  GVQ+L E+ D+V+
Sbjct:  342 LYMGPTRELAEEIPAGNIAAVLGLDRARSGETAISVGFSNVQGSFERLHYISEPVVTIAVEPKNPKDLTKMIDALRKLSIEDPNLVVKINEETGEYLLSGMGFLHLEVSLQLLRENY--GIDVVTTPPIVVYRESIRAKS-QVFEGKSPNKHNKFYLSVEPLNDKTIELISNGTIREDMDSKEMAKILRDEASWDYDEAKRIIAIDENV---NVFVDLTSGVQHLREVMDTVL 568          
The following BLAST results are available for this feature:
BLAST of CF831988 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 409
Match NameE-valueIdentityDescription
EF2_PYRHO4.485e-3639.57Elongation factor 2 OS=Pyrococcus horikoshii GN=fu... [more]
EF2_PYRAR4.485e-3639.48Elongation factor 2 OS=Pyrobaculum arsenaticum (st... [more]
EF2_THESM7.650e-3638.72Elongation factor 2 OS=Thermococcus sibiricus (str... [more]
EF2_METST7.650e-3638.63Elongation factor 2 OS=Methanosphaera stadtmanae (... [more]
EF2_SULTO9.991e-3635.90Elongation factor 2 OS=Sulfolobus tokodaii GN=fusA... [more]
EF2_METTH9.991e-3636.91Elongation factor 2 OS=Methanobacterium thermoauto... [more]
EF2_ARCFU9.991e-3636.91Elongation factor 2 OS=Archaeoglobus fulgidus GN=f... [more]
EF2_DESMO1.704e-3536.91Elongation factor 2 OS=Desulfurococcus mobilis GN=... [more]
EF2_SULSO2.226e-3535.19Elongation factor 2 OS=Sulfolobus solfataricus GN=... [more]
EF2_SULIY2.226e-3535.19Elongation factor 2 OS=Sulfolobus islandicus (stra... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_01C02_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01C02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF831988 ID=CF831988; Name=CF831988; organism=Citrus sinensis; type=EST; length=704bp
CCGTATTTGGATGGGAAAGAAGCAGGAAACCGTTGAGGATGTGCCTTGTG
GTAACACTGTGGCTATGGTTGGTCTCGATCAATTCATCACTAAAAATGCT
ACCTTGACTAATGAGAAGGAAGTTGATGCCCATCCCATCCGTGCTATGAA
GTTCTCTGTCTCACCTGTTGTTCGTGTGGCTGTCCAGTGCAAAGTCGCTT
CTGATCTCCCTAAGCTTGTTGAAGGTCTTAAGCGTTTGGCCAAGTCAGAT
CCTATGGTTGTCTGTACAATTGAGGAGTCTGGCGAGCACATTGTTGCTGG
TGCGGGAGAACTTCACCTTGAGATCTGTTTGAAGGATCTGCAGGACGATT
TCATGGGAGGTGCTGAAATTATTAAATCTGATCCTGTTGTGTCCTTCCGT
GAAACTGTCCTTGAGAAGTCTTGCCGCACTGTGATGAGTAAGTCTCCCAA
CAAGCATAATCGTCTCTACATGGAAGCCCGACCTCTGGAAGAAGGTCTTG
CTGAGGCCATAGATGATGGCCGCATTGGTCCAAGGGATGATCCCAAGGCT
CGATCTAAGATCTTGTCTGAGGAGTTCGGCTGGGACAAGGATCTTGCGAA
GAAGATTTGGTGTTTTGGTCCTGAGACCACTGGCCCTAACATGTTCGTTG
ATATGTGTAAGGGAGTTCAATACTTGAATGAAATTAAGGATTCTGTTGTT
GCTG
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