CF831988

Overview
NameCF831988
Unique NameCF831988
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length704
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1001 contig Csv1_Contig1001:1..704. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF831988 vs. ExPASy Swiss-Prot
Match: EF2_SULIN (Elongation factor 2 OS=Sulfolobus islandicus (strain Y.N.15.51 / Yellowstone #2) GN=fusA PE=3 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 2.226e-35
Identity = 82/233 (35.19%), Postives = 137/233 (58.80%), Query Frame = 2
Query:    5 IWMGKKQETVEDVPCGNTVAMVGLDQFITKNATLTNEKEVDAHPIRAMKFSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMVVCTI-EESGEHIVAGAGELHLEICLKDLQDDFMGGAEIIKSDPVVSFRETVLEKSCRTVMSKSPNKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKARSKILSEEFGWDKDLAKKIWCFGPETTGPNMFVDMCKGVQYLNEIKDSVV 700
            ++MG  +E  E++P GN  A++GLD+  +    ++            + +   PVV +AV+ K   DL K+++ L++L+  DP +V  I EE+GE++++G G LHLE+ L+ L++++  G +++ + P+V +RE++  KS +    KSPNKHN+ Y+   PL +   E I +G I    D K  +KIL +E  WD D AK+I          N+FVD+  GVQ+L E+ D+V+
Sbjct:  342 LYMGPTRELAEEIPAGNIAAVLGLDRARSGETAISVGFSNVQGSFERLHYISEPVVTIAVEPKNPKDLTKMIDALRKLSIEDPNLVVKINEETGEYLLSGMGFLHLEVSLQLLRENY--GIDVVTTPPIVVYRESIRAKS-QVFEGKSPNKHNKFYLSVEPLNDKTIELISNGTIREDMDSKEMAKILRDEASWDYDEAKRIIAIDENV---NVFVDLTSGVQHLREVMDTVL 568          
BLAST of CF831988 vs. ExPASy Swiss-Prot
Match: EF2_SULIM (Elongation factor 2 OS=Sulfolobus islandicus (strain M.14.25 / Kamchatka #1) GN=fusA PE=3 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 2.226e-35
Identity = 82/233 (35.19%), Postives = 137/233 (58.80%), Query Frame = 2
Query:    5 IWMGKKQETVEDVPCGNTVAMVGLDQFITKNATLTNEKEVDAHPIRAMKFSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMVVCTI-EESGEHIVAGAGELHLEICLKDLQDDFMGGAEIIKSDPVVSFRETVLEKSCRTVMSKSPNKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKARSKILSEEFGWDKDLAKKIWCFGPETTGPNMFVDMCKGVQYLNEIKDSVV 700
            ++MG  +E  E++P GN  A++GLD+  +    ++            + +   PVV +AV+ K   DL K+++ L++L+  DP +V  I EE+GE++++G G LHLE+ L+ L++++  G +++ + P+V +RE++  KS +    KSPNKHN+ Y+   PL +   E I +G I    D K  +KIL +E  WD D AK+I          N+FVD+  GVQ+L E+ D+V+
Sbjct:  342 LYMGPTRELAEEIPAGNIAAVLGLDRARSGETAISVGFSNVQGSFERLHYISEPVVTIAVEPKNPKDLTKMIDALRKLSIEDPNLVVKINEETGEYLLSGMGFLHLEVSLQLLRENY--GIDVVTTPPIVVYRESIRAKS-QVFEGKSPNKHNKFYLSVEPLNDKTIELISNGTIREDMDSKEMAKILRDEASWDYDEAKRIIAIDENV---NVFVDLTSGVQHLREVMDTVL 568          
BLAST of CF831988 vs. ExPASy Swiss-Prot
Match: EF2_SULIL (Elongation factor 2 OS=Sulfolobus islandicus (strain L.S.2.15 / Lassen #1) GN=fusA PE=3 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 2.226e-35
Identity = 82/233 (35.19%), Postives = 137/233 (58.80%), Query Frame = 2
Query:    5 IWMGKKQETVEDVPCGNTVAMVGLDQFITKNATLTNEKEVDAHPIRAMKFSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMVVCTI-EESGEHIVAGAGELHLEICLKDLQDDFMGGAEIIKSDPVVSFRETVLEKSCRTVMSKSPNKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKARSKILSEEFGWDKDLAKKIWCFGPETTGPNMFVDMCKGVQYLNEIKDSVV 700
            ++MG  +E  E++P GN  A++GLD+  +    ++            + +   PVV +AV+ K   DL K+++ L++L+  DP +V  I EE+GE++++G G LHLE+ L+ L++++  G +++ + P+V +RE++  KS +    KSPNKHN+ Y+   PL +   E I +G I    D K  +KIL +E  WD D AK+I          N+FVD+  GVQ+L E+ D+V+
Sbjct:  342 LYMGPTRELAEEIPAGNIAAVLGLDRARSGETAISVGFSNVQGSFERLHYISEPVVTIAVEPKNPKDLTKMIDALRKLSIEDPNLVVKINEETGEYLLSGMGFLHLEVSLQLLRENY--GIDVVTTPPIVVYRESIRAKS-QVFEGKSPNKHNKFYLSVEPLNDKTIELISNGTIREDMDSKEMAKILRDEASWDYDEAKRIIAIDENV---NVFVDLTSGVQHLREVMDTVL 568          
BLAST of CF831988 vs. ExPASy Swiss-Prot
Match: EF2_SULIK (Elongation factor 2 OS=Sulfolobus islandicus (strain M.16.4 / Kamchatka #3) GN=fusA PE=3 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 2.226e-35
Identity = 82/233 (35.19%), Postives = 137/233 (58.80%), Query Frame = 2
Query:    5 IWMGKKQETVEDVPCGNTVAMVGLDQFITKNATLTNEKEVDAHPIRAMKFSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMVVCTI-EESGEHIVAGAGELHLEICLKDLQDDFMGGAEIIKSDPVVSFRETVLEKSCRTVMSKSPNKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKARSKILSEEFGWDKDLAKKIWCFGPETTGPNMFVDMCKGVQYLNEIKDSVV 700
            ++MG  +E  E++P GN  A++GLD+  +    ++            + +   PVV +AV+ K   DL K+++ L++L+  DP +V  I EE+GE++++G G LHLE+ L+ L++++  G +++ + P+V +RE++  KS +    KSPNKHN+ Y+   PL +   E I +G I    D K  +KIL +E  WD D AK+I          N+FVD+  GVQ+L E+ D+V+
Sbjct:  342 LYMGPTRELAEEIPAGNIAAVLGLDRARSGETAISVGFSNVQGSFERLHYISEPVVTIAVEPKNPKDLTKMIDALRKLSIEDPNLVVKINEETGEYLLSGMGFLHLEVSLQLLRENY--GIDVVTTPPIVVYRESIRAKS-QVFEGKSPNKHNKFYLSVEPLNDKTIELISNGTIREDMDSKEMAKILRDEASWDYDEAKRIIAIDENV---NVFVDLTSGVQHLREVMDTVL 568          
BLAST of CF831988 vs. ExPASy Swiss-Prot
Match: EF2_SULIA (Elongation factor 2 OS=Sulfolobus islandicus (strain M.16.27) GN=fusA PE=3 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 2.226e-35
Identity = 82/233 (35.19%), Postives = 137/233 (58.80%), Query Frame = 2
Query:    5 IWMGKKQETVEDVPCGNTVAMVGLDQFITKNATLTNEKEVDAHPIRAMKFSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMVVCTI-EESGEHIVAGAGELHLEICLKDLQDDFMGGAEIIKSDPVVSFRETVLEKSCRTVMSKSPNKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKARSKILSEEFGWDKDLAKKIWCFGPETTGPNMFVDMCKGVQYLNEIKDSVV 700
            ++MG  +E  E++P GN  A++GLD+  +    ++            + +   PVV +AV+ K   DL K+++ L++L+  DP +V  I EE+GE++++G G LHLE+ L+ L++++  G +++ + P+V +RE++  KS +    KSPNKHN+ Y+   PL +   E I +G I    D K  +KIL +E  WD D AK+I          N+FVD+  GVQ+L E+ D+V+
Sbjct:  342 LYMGPTRELAEEIPAGNIAAVLGLDRARSGETAISVGFSNVQGSFERLHYISEPVVTIAVEPKNPKDLTKMIDALRKLSIEDPNLVVKINEETGEYLLSGMGFLHLEVSLQLLRENY--GIDVVTTPPIVVYRESIRAKS-QVFEGKSPNKHNKFYLSVEPLNDKTIELISNGTIREDMDSKEMAKILRDEASWDYDEAKRIIAIDENV---NVFVDLTSGVQHLREVMDTVL 568          
BLAST of CF831988 vs. ExPASy Swiss-Prot
Match: EF2_THENV (Elongation factor 2 OS=Thermoproteus neutrophilus (strain DSM 2338 / JCM 9278 / V24Sta) GN=fusA PE=3 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 2.907e-35
Identity = 92/233 (39.48%), Postives = 131/233 (56.22%), Query Frame = 2
Query:    5 IWMGKKQETVEDVPCGNTVAMVGLDQFITKNATLTNEKEVDAHPIRAMKFSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMVVCTIE-ESGEHIVAGAGELHLEICLKDLQDDFMGGAEIIKSDPVVSFRETVLEKSCRTVMSKSPNKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKARSKILSEEFGWDKDLAKKIWCFGPETTGPNMFVDMCKGVQYLNEIKDSVV 700
            I+MG  +  V  +P GN VA++G+D+      TL + +  +  P   M++   PVV VA++ K  ++L +LVE LK L   DP +   I+ E+G+ +++G G LHLEI    L++      E   S P++ FRETV E+S +    KSPNKHNRLY    PL+E   E I    I    DP+ R+KIL E+ GWD D A+ IW         N+ VD   G+QYL EI+D +V
Sbjct:  344 IYMGPSRIIVPYMPAGNIVALMGVDE-ARAGDTLVDPRLSEIPPFEKMRYISEPVVTVAIEPKNPAELARLVEALKDLVIEDPTLDLKIDQETGQILLSGVGTLHLEIATWLLKERTK--TEFTVSPPLIRFRETVRERS-QVWEGKSPNKHNRLYFYVEPLDETTIELIATREITEDQDPRERAKILREKAGWDADEARGIWAIDDRFF--NLIVDRTSGIQYLREIRDYIV 570          
BLAST of CF831988 vs. ExPASy Swiss-Prot
Match: EF2_PYRCJ (Elongation factor 2 OS=Pyrobaculum calidifontis (strain JCM 11548 / VA1) GN=fusA PE=3 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 2.907e-35
Identity = 91/233 (39.06%), Postives = 129/233 (55.36%), Query Frame = 2
Query:    5 IWMGKKQETVEDVPCGNTVAMVGLDQFITKNATLTNEKEVDAHPIRAMKFSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMVVCTIE-ESGEHIVAGAGELHLEICLKDLQDDFMGGAEIIKSDPVVSFRETVLEKSCRTVMSKSPNKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKARSKILSEEFGWDKDLAKKIWCFGPETTGPNMFVDMCKGVQYLNEIKDSVV 700
            I+MG  +  V  +P GN VA++G+D+      TL      D  P   M++   PVV VA++ K  ++L +LVE LK L   DP +   I+ E+G+ +++G G LHLEI    L++      E   S P++ FRETV E+S +    KSPNKHNRLY    PL+E   E I    I    DP+ R+KIL E+ GWD D A+ +W         N+ VD   G+QYL EI+D ++
Sbjct:  344 IYMGPTRIIVPYMPAGNIVALMGVDE-ARAGDTLVTPSLADIPPFERMRYISEPVVTVAIEPKNPAELARLVEALKDLVIEDPTLDLKIDQETGQILLSGVGTLHLEIATWLLKERTK--VEFSVSPPLIRFRETVRERS-QVWEGKSPNKHNRLYFYVEPLDETTVELIATREITEEQDPRERAKILREKAGWDTDEARGVWAIDDRYF--NVIVDKTTGIQYLREIRDYII 570          
BLAST of CF831988 vs. ExPASy Swiss-Prot
Match: EF2_PYRAE (Elongation factor 2 OS=Pyrobaculum aerophilum GN=fusA PE=3 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 2.907e-35
Identity = 92/233 (39.48%), Postives = 131/233 (56.22%), Query Frame = 2
Query:    5 IWMGKKQETVEDVPCGNTVAMVGLDQFITKNATLTNEKEVDAHPIRAMKFSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMVVCTIE-ESGEHIVAGAGELHLEICLKDLQDDFMGGAEIIKSDPVVSFRETVLEKSCRTVMSKSPNKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKARSKILSEEFGWDKDLAKKIWCFGPETTGPNMFVDMCKGVQYLNEIKDSVV 700
            I+MG  +  V  +P GN VA++G+D+      TL + K  +  P   M++   PVV VA++ K  ++L +LVE LK L   DP +   I+ E+G+ +++G G LHLEI    L++      E   S P++ FRETV E+S +    KSPNKHNRLY    PL+E   E I    I    +P+ R+KIL E+ GWD D A+ IW         N+ VD   G+QYL EI+D +V
Sbjct:  344 IYMGPSRIIVPYMPAGNIVALMGVDE-ARAGDTLVDPKFSEIPPFEKMRYISEPVVTVAIEPKNPAELARLVEALKDLVVEDPTLDLKIDQETGQILLSGVGTLHLEIATWLLKERTK--TEFTVSPPLIRFRETVRERS-QVWEGKSPNKHNRLYFYVEPLDETTIELIASREITEDQEPRERAKILREKAGWDTDEARGIWAIDDRYF--NVIVDKTSGIQYLREIRDYIV 570          
BLAST of CF831988 vs. ExPASy Swiss-Prot
Match: EF2_PYRAB (Elongation factor 2 OS=Pyrococcus abyssi GN=fusA PE=3 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 2.907e-35
Identity = 92/235 (39.15%), Postives = 139/235 (59.15%), Query Frame = 2
Query:    5 IWMGKKQETVEDVPCGNTVAMVGLDQFITKNATLTNEKEVDAHPIRAMKFSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMVVCTI-EESGEHIVAGAGELHLEICLKDLQDDFMGGAEIIKSDPVVSFRETVLEKSCRTVMSKSPNKHNRLYMEARPLEEGLAEAIDDGRI--GPRDDPKARSKILSEEFGWDKDLAKKIWCFGPETTGPNMFVDMCKGVQYLNEIKDSVV 700
            I+MG ++  +E VP GN VA+ GL   +          E    P  A+ +   PVV VA++ K   DLP+L+E L++LAK DP +   I EE+G+H+++G GELHLE+ L  L+ D+  G +I  S+P+V +RE++ + S   V  KSPN+HNR Y+   P+ + +  AI +G I  G   +PK  +K L+ E G D ++A+ I     +    NMF+D  KGVQYLNE+ D ++
Sbjct:  340 IYMGPERINMEAVPAGNIVAVTGLRDAMAGETVA----EEPIEPFEALHYVSEPVVTVAIEAKNVKDLPRLIEALRQLAKEDPTLHVKIDEETGQHLLSGMGELHLEVKLYKLKKDW--GIDIDVSEPIVVYRESITKPS-PMVEGKSPNRHNRFYIVVEPMPDEIYNAIKEGIIPEGRIKNPKEVAKKLA-ELGMDYEIARGI----VDVYNGNMFLDNTKGVQYLNEVMDLLI 562          
BLAST of CF831988 vs. ExPASy Swiss-Prot
Match: EF2_DESK1 (Elongation factor 2 OS=Desulfurococcus kamchatkensis (strain 1221n / DSM 18924) GN=fusA PE=3 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 6.476e-35
Identity = 80/233 (34.33%), Postives = 133/233 (57.08%), Query Frame = 2
Query:    5 IWMGKKQETVEDVPCGNTVAMVGLDQFITKNATLTNEKEVDAHPIRAMKFSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMVVCTI-EESGEHIVAGAGELHLEICLKDLQDDFMGGAEIIKSDPVVSFRETVLEKSCRTVMSKSPNKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKARSKILSEEFGWDKDLAKKIWCFGPETTGPNMFVDMCKGVQYLNEIKDSVV 700
            ++MG  +E  +++  GN  A +GL++  +    ++ + +    P   +K     VV VA++ K      KL++ L +L   DP ++  I EE+GE++++G G LH+EI L  L+D +  G E++ S PV+ +RET+ ++S +    KSPNKHN+ Y+   PL E     + +G I    D + R+KIL E+ GWD D A++I          N+ +DM  GVQYL E+KD+++
Sbjct:  341 LYMGPYRELADEITAGNIAAALGLEKARSGETVVSMKYKDTMTPFEKLKMITESVVTVAIEPKNPQQTTKLIDALYKLHLEDPSLIVKINEETGEYLLSGVGTLHIEIALTLLKDLY--GLEVVTSPPVIVYRETIRDRS-QVFEGKSPNKHNKFYISVTPLNEETLRLLSEGIIMEDMDARERAKILREQAGWDADEARRIMAIDENL---NILIDMTTGVQYLREVKDTII 567          
The following BLAST results are available for this feature:
BLAST of CF831988 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 409
Match NameE-valueIdentityDescription
EF2_SULIN2.226e-3535.19Elongation factor 2 OS=Sulfolobus islandicus (stra... [more]
EF2_SULIM2.226e-3535.19Elongation factor 2 OS=Sulfolobus islandicus (stra... [more]
EF2_SULIL2.226e-3535.19Elongation factor 2 OS=Sulfolobus islandicus (stra... [more]
EF2_SULIK2.226e-3535.19Elongation factor 2 OS=Sulfolobus islandicus (stra... [more]
EF2_SULIA2.226e-3535.19Elongation factor 2 OS=Sulfolobus islandicus (stra... [more]
EF2_THENV2.907e-3539.48Elongation factor 2 OS=Thermoproteus neutrophilus ... [more]
EF2_PYRCJ2.907e-3539.06Elongation factor 2 OS=Pyrobaculum calidifontis (s... [more]
EF2_PYRAE2.907e-3539.48Elongation factor 2 OS=Pyrobaculum aerophilum GN=f... [more]
EF2_PYRAB2.907e-3539.15Elongation factor 2 OS=Pyrococcus abyssi GN=fusA P... [more]
EF2_DESK16.476e-3534.33Elongation factor 2 OS=Desulfurococcus kamchatkens... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_01C02_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01C02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF831988 ID=CF831988; Name=CF831988; organism=Citrus sinensis; type=EST; length=704bp
CCGTATTTGGATGGGAAAGAAGCAGGAAACCGTTGAGGATGTGCCTTGTG
GTAACACTGTGGCTATGGTTGGTCTCGATCAATTCATCACTAAAAATGCT
ACCTTGACTAATGAGAAGGAAGTTGATGCCCATCCCATCCGTGCTATGAA
GTTCTCTGTCTCACCTGTTGTTCGTGTGGCTGTCCAGTGCAAAGTCGCTT
CTGATCTCCCTAAGCTTGTTGAAGGTCTTAAGCGTTTGGCCAAGTCAGAT
CCTATGGTTGTCTGTACAATTGAGGAGTCTGGCGAGCACATTGTTGCTGG
TGCGGGAGAACTTCACCTTGAGATCTGTTTGAAGGATCTGCAGGACGATT
TCATGGGAGGTGCTGAAATTATTAAATCTGATCCTGTTGTGTCCTTCCGT
GAAACTGTCCTTGAGAAGTCTTGCCGCACTGTGATGAGTAAGTCTCCCAA
CAAGCATAATCGTCTCTACATGGAAGCCCGACCTCTGGAAGAAGGTCTTG
CTGAGGCCATAGATGATGGCCGCATTGGTCCAAGGGATGATCCCAAGGCT
CGATCTAAGATCTTGTCTGAGGAGTTCGGCTGGGACAAGGATCTTGCGAA
GAAGATTTGGTGTTTTGGTCCTGAGACCACTGGCCCTAACATGTTCGTTG
ATATGTGTAAGGGAGTTCAATACTTGAATGAAATTAAGGATTCTGTTGTT
GCTG
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