CF831988

Overview
NameCF831988
Unique NameCF831988
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length704
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF831988 vs. ExPASy Swiss-Prot
Match: EF2_METAC (Elongation factor 2 OS=Methanosarcina acetivorans GN=fusA PE=3 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 8.458e-35
Identity = 88/234 (37.61%), Postives = 136/234 (58.12%), Query Frame = 2
Query:    5 IWMGKKQETVEDVPCGNTVAMVGLDQFITKNATLTNEKEVDAHPIRAMKFSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMVVCTI-EESGEHIVAGAGELHLEICLKDLQDDFMGGAEIIKSDPVVSFRETVLEKSCRTVMSKSPNKHNRLYMEARPLEEGLAEAIDDGRIGPR-DDPKARSKILSEEFGWDKDLAKKIWCFGPETTGPNMFVDMCKGVQYLNEIKDSVV 700
            I+MG ++  V+ +P GN  A+ GL + I  +   T +      P  +++    PVV VAV+ K   DLPKL+E L+++AK DP +  T+ EE+GEH++AG GELHLE+    ++ D     EI  S P+V +RET+ +K    +  KSPN+HNR Y+ A PL+  +  AI +G +     + + R K++  + G +K+ AK I          N+F+DM KG+QYLNE  + V+
Sbjct:  340 IFMGPERLEVDKIPAGNIAAVTGLKEAIVGSTVTTLDGMT---PFESIRHVSEPVVTVAVEAKHTKDLPKLIEVLRQVAKEDPTLQITLDEETGEHLMAGMGELHLEVIAHRIERD--KNVEITTSKPIVVYRETI-KKKTEPIEGKSPNRHNRFYIYAEPLDTEIVSAIKEGEVSMNLPELERRQKLI--DLGMEKEEAKGI----VGIFNSNIFIDMTKGIQYLNETMELVL 561          
BLAST of CF831988 vs. ExPASy Swiss-Prot
Match: EF2_METMA (Elongation factor 2 OS=Methanosarcina mazei GN=fusA PE=3 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 1.884e-34
Identity = 89/234 (38.03%), Postives = 133/234 (56.84%), Query Frame = 2
Query:    5 IWMGKKQETVEDVPCGNTVAMVGLDQFITKNATLTNEKEVDAHPIRAMKFSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMVVCTI-EESGEHIVAGAGELHLEICLKDLQDDFMGGAEIIKSDPVVSFRETVLEKSCRTVMSKSPNKHNRLYMEARPLEEGLAEAIDDGRIGPR-DDPKARSKILSEEFGWDKDLAKKIWCFGPETTGPNMFVDMCKGVQYLNEIKDSVV 700
            I+MG ++  V+ +P GN  A+ GL   I  +   T +      P  +++    PVV VAV+ K   DLPKL+E L+++AK DP +  T+ EE+GEH++AG GELHLE+    ++ D     EI  S P+V +RET+ +K    +  KSPN+HNR Y+   PL+  +  AI +G I     + + R K++  E G DK+ AK I          N+F+D  KG+QYLNE  + V+
Sbjct:  340 IFMGPERLEVDKIPAGNIAAVTGLKDAIVGSTVTTLDGMT---PFESIRHVSEPVVTVAVEAKHTKDLPKLIEVLRQVAKEDPTLQITLDEETGEHLMAGMGELHLEVIAHRIERD--KNVEITTSKPIVVYRETI-KKKTEPIEGKSPNRHNRFYISVEPLDLEIVSAIKEGEITMNMPELERRQKLI--ELGMDKEQAKGI----AGIFNSNIFIDQTKGIQYLNETMELVL 561          
BLAST of CF831988 vs. ExPASy Swiss-Prot
Match: EF2_METTE (Elongation factor 2 OS=Methanosarcina thermophila GN=fusA PE=3 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 2.461e-34
Identity = 91/234 (38.89%), Postives = 132/234 (56.41%), Query Frame = 2
Query:    5 IWMGKKQETVEDVPCGNTVAMVGLDQFITKNATLTNEKEVDAHPIRAMKFSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMVVCTI-EESGEHIVAGAGELHLEICLKDLQDDFMGGAEIIKSDPVVSFRETVLEKSCRTVMSKSPNKHNRLYMEARPLEEGLAEAIDDGRIGPR-DDPKARSKILSEEFGWDKDLAKKIWCFGPETTGPNMFVDMCKGVQYLNEIKDSVV 700
            I+MG ++  VE +P GN  A+ GL   I  +   T +      P  +++    PVV VAV+ K   DLPKLVE L+++AK DP +  T+ EE+GEH++AG GELHLE+    +Q D     EI  S P+V +RET+ +K    V  KSPN+HNR Y+   PL+  + E I  G I     + + R K++  E G  K+ AK I          N+F+D+ KG+QYLNE  + ++
Sbjct:  340 IFMGPERLEVEKIPAGNIAAVTGLKDAIVGSTVTTLDGMT---PFESIRHVSEPVVTVAVEAKHTKDLPKLVEVLRQVAKEDPTLQITLDEETGEHLMAGMGELHLEVIAHRIQRD--KNVEITTSKPIVVYRETI-KKKIEPVEGKSPNRHNRFYIYVEPLDTAIVEMIKSGDISMNLPELERRQKLI--ELGMGKEEAKGI----VGIHNSNIFIDITKGIQYLNETMELIL 561          
BLAST of CF831988 vs. ExPASy Swiss-Prot
Match: EF2_METMT (Elongation factor 2 OS=Methanococcoides methylutens GN=fusA PE=3 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 4.198e-34
Identity = 90/234 (38.46%), Postives = 136/234 (58.12%), Query Frame = 2
Query:    5 IWMGKKQETVEDVPCGNTVAMVGLDQFITKNATLTNEKEVDAHPIRAMKFSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMVVCTI-EESGEHIVAGAGELHLEICLKDLQDDFMGGAEIIKSDPVVSFRETVLEKSCRTVMSKSPNKHNRLYMEARPLEEGLAEAIDDGRIGPR-DDPKARSKILSEEFGWDKDLAKKIWCFGPETTGPNMFVDMCKGVQYLNEIKDSVV 700
            ++MG ++  V+ +P GN  A+ GL   I  +   T +      P  +++ +  PVV VAV+ K   DLPKLVE L+++AK DP +  T+ EE+GEH++AG GELHLE+    ++ D   G EI  + P+V +RET+   +   V  KSPN+HNR Y+   PLE  + E I +G I  R  + + R K+++   G DKD AK+I     +    N + DM KG+Q+LNE  + V+
Sbjct:  340 VFMGPERLEVDKIPAGNIAAVTGLRDAIVGSTVTTLD---GMSPFESIRHASEPVVTVAVEAKHMKDLPKLVEVLRQVAKEDPTLKITLDEETGEHLMAGMGELHLEVIAHRIERD--KGVEISTTPPIVVYRETI-TGTAGPVEGKSPNRHNRFYVVVEPLEPEVRELIREGEISMRMPELERREKLIAA--GLDKDEAKRI----ADIFESNAYFDMTKGIQHLNETMELVL 561          
BLAST of CF831988 vs. ExPASy Swiss-Prot
Match: EF2_METS3 (Elongation factor 2 OS=Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861) GN=fusA PE=3 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 5.482e-34
Identity = 84/233 (36.05%), Postives = 134/233 (57.51%), Query Frame = 2
Query:    5 IWMGKKQETVEDVPCGNTVAMVGLDQFITKNATLTNEKEVDAHPIRAMKFSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMVVCTI-EESGEHIVAGAGELHLEICLKDLQDDFMGGAEIIKSDPVVSFRETVLEKSCRTVMSKSPNKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKARSKILSEEFGWDKDLAKKIWCFGPETTGPNMFVDMCKGVQYLNEIKDSVV 700
            ++ G ++   + VP GN V + G    I      + E ++       +     PVV VAV+ K   DLPKL+E L+++AK DP +   I EE+GEH+V+G GELHLE+    ++D    G EI  S+P+V +RETV + S + V  KSPNKHNR Y+   PLE+ L +A+ +G++         S     E+G DK+ A+K+W    +    ++F++  +G+QYL+E+K+ ++
Sbjct:  340 VYFGPERVNTDAVPAGNIVYVAGAKGAIAGETICSPEDKIKE--FEGLDHISEPVVTVAVEAKNTKDLPKLIEVLRQVAKEDPTIKVEINEETGEHLVSGMGELHLEVISYRIKDK---GVEIQTSEPIVVYRETVSQLSPQ-VEGKSPNKHNRFYITVEPLEDELFKALQEGKLKEGKVKGKESANDFMEYGLDKEEARKVW----DVYNRSVFINATRGIQYLDEVKELLI 562          
BLAST of CF831988 vs. ExPASy Swiss-Prot
Match: EF2_METBU (Elongation factor 2 OS=Methanococcoides burtonii (strain DSM 6242) GN=fusA PE=3 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 5.482e-34
Identity = 93/235 (39.57%), Postives = 140/235 (59.57%), Query Frame = 2
Query:    5 IWMGKKQETVEDVPCGNTVAMVGL-DQFITKNATLTNEKEVDAHPIRAMKFSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMVVCTI-EESGEHIVAGAGELHLEICLKDLQDDFMGGAEIIKSDPVVSFRETVLEKSCRTVMSKSPNKHNRLYMEARPLEEGLAEAIDDGRIGPR-DDPKARSKILSEEFGWDKDLAKKIWCFGPETTGPNMFVDMCKGVQYLNEIKDSVV 700
            ++MG ++  V+ +P GN  A+ GL D F+   AT+T  + ++  P  ++K +  PVV VAV+ K   DLPKLVE L+++AK DP +  T+ EE+GEH++AG GELHLE+    ++ D   G EI  + P+V +RET+   +   V  KSPN+HNR Y+   PLE  + E I +  I  R  + + R K+++   G +KD AKKI          N + DM KG+QYLNE  + ++
Sbjct:  340 VFMGPERLEVDAIPAGNIAAVTGLRDAFV--GATVTTLEGME--PFESIKHASEPVVTVAVEAKHMKDLPKLVEVLRQVAKEDPTLKITLDEETGEHLMAGMGELHLEVIAHRIERD--KGVEITTTPPLVVYRETI-TGTAGPVEGKSPNRHNRFYVIVEPLEPEVRELIRNDEISMRMPEVERREKLMAA--GLNKDEAKKI----VNIFESNAYFDMTKGIQYLNETMELII 561          
BLAST of CF831988 vs. ExPASy Swiss-Prot
Match: EF2_METBF (Elongation factor 2 OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=fusA PE=3 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 5.482e-34
Identity = 88/234 (37.61%), Postives = 134/234 (57.26%), Query Frame = 2
Query:    5 IWMGKKQETVEDVPCGNTVAMVGLDQFITKNATLTNEKEVDAHPIRAMKFSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMVVCTI-EESGEHIVAGAGELHLEICLKDLQDDFMGGAEIIKSDPVVSFRETVLEKSCRTVMSKSPNKHNRLYMEARPLEEGLAEAIDDGRIGPR-DDPKARSKILSEEFGWDKDLAKKIWCFGPETTGPNMFVDMCKGVQYLNEIKDSVV 700
            I+MG ++  V+ +P GN  A+ GL + I  +   T +      P  +++    PVV VAV+ K   DLPKL+E L+++AK DP +  T+ EE+GEH++AG GELHLE+    ++ D     EI  S P+V +RET+ +K    V  KSPN+HNR Y+   PL+  +  AI  G I     + + R K++  + G +K+ AK I          N+F+DM KG+QYLNE  + ++
Sbjct:  340 IFMGPERLEVDKIPAGNIAAVTGLKEAIVGSTVTTLD---GMEPFESIRHVSEPVVTVAVEAKHTKDLPKLIEVLRQVAKEDPTLQITLDEETGEHLMAGMGELHLEVIAHRIERD--KNVEITTSKPIVVYRETI-KKKIEPVEGKSPNRHNRFYIYVEPLDLEIVSAIKSGEIHMNLPELERRQKLI--DLGMEKEEAKGI----VGIFNSNIFIDMTKGIQYLNETMELIL 561          
BLAST of CF831988 vs. ExPASy Swiss-Prot
Match: EF2_METS5 (Elongation factor 2 OS=Metallosphaera sedula (strain ATCC 51363 / DSM 5348) GN=fusA PE=3 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 7.160e-34
Identity = 83/234 (35.47%), Postives = 138/234 (58.97%), Query Frame = 2
Query:    5 IWMGKKQETVEDVPCGNTVAMVGLDQFITKNATLTNEKEVDAH-PIRAMKFSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMVVCTI-EESGEHIVAGAGELHLEICLKDLQDDFMGGAEIIKSDPVVSFRETVLEKSCRTVMSKSPNKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKARSKILSEEFGWDKDLAKKIWCFGPETTGPNMFVDMCKGVQYLNEIKDSVV 700
            I+MG+ +E  +++P GN  A++GL++      TL + +  D       + +   PVV +AV+ K   DL K+++ L++L+  DP +V  I EE+GE++++G G LH+E+ L+ L+D++  G +++ + P+V +RE+V  KS +    KSPNKHN+ Y+   PL +   E I +G I    D K  +KIL ++  WD D AKKI          N+ +D   GVQ+L EI D+++
Sbjct:  342 IYMGQFRELADEIPAGNIAAVLGLER-ARSGETLIDIRYKDLQGSFEKLHYVSEPVVTIAVEPKNPKDLTKMIDALRKLSIEDPNLVVKINEETGEYLLSGMGFLHVEVSLQLLKDNY--GVDVVTTPPIVVYRESVRNKS-QVFEGKSPNKHNKFYISVEPLNDKTIELISNGTIKEDMDSKEMAKILRDQADWDYDEAKKIIAIDENV---NVLIDATSGVQHLREIMDTML 568          
BLAST of CF831988 vs. ExPASy Swiss-Prot
Match: EF2_PICTO (Elongation factor 2 OS=Picrophilus torridus GN=fusA PE=3 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 1.595e-33
Identity = 82/233 (35.19%), Postives = 135/233 (57.94%), Query Frame = 2
Query:   11 MGKKQETVEDVPCGNTVAMVGLDQFITKNATLTNEKEVDAHPIRAMKFSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMVVCTI-EESGEHIVAGAGELHLEICLKDLQDDFMGGAEIIKSDPVVSFRETVLEKSCRTVMSKSPNKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKARSKILS--EEFGWDKDLAKKIWCFGPETTGPNMFVDMCKGVQYLNEIKDSVV 700
            +G  +  ++++  GN VA++GL   I   A  T     D  P   M     PVV +A++ K  +DLPKL++ L+ ++K+DP +   I +E+GEH+++G GELHLE+ +  +++D+    +++ S+P+V +RETV +K       KSPNKHNR Y +  PL E +  AI DG+I      K +  +++  EE G   D A+ + C      G N+ +DM KG+QYL+E  + ++
Sbjct:  341 VGPDRIPIDEIAAGNIVAIIGLKGAI---AGSTVSSLSDMEPFEPMTHYTDPVVTLAIEAKHTADLPKLIDVLRTISKADPSIQVDINQETGEHLISGMGELHLEVTIYRIKNDYK--VDVVTSEPLVVYRETV-DKKGGPFEGKSPNKHNRFYFQVEPLPENVVSAILDGKIPEGSKFKDKKAVMANLEEAGLTHDEARGLVCI----YGTNVMLDMTKGIQYLDETMELLI 563          
BLAST of CF831988 vs. ExPASy Swiss-Prot
Match: EF2_METJA (Elongation factor 2 OS=Methanocaldococcus jannaschii GN=fusA PE=3 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 3.553e-33
Identity = 86/236 (36.44%), Postives = 138/236 (58.47%), Query Frame = 2
Query:    5 IWMGKKQETVEDVPCGNTVAMVGLDQFITKNATLTNEKEVDAHPIRAMKFSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMVVCTI-EESGEHIVAGAGELHLEICLKDLQDDFMGGAEIIKSDPVVSFRETVLEKSCRTVMSKSPNKHNRLYMEARPLEEGLAEAIDDGRIGPRDDP-KARSKILSE--EFGWDKDLAKKIWCFGPETTGPNMFVDMCKGVQYLNEIKDSVV 700
            ++MG ++  V+ +  GN  A+VGL +        + +K ++  P  A+     PV+ VA++ K   DLPKL+E L+++A+ DP V   I EE+GEH+++G GELH+EI  K L+ +   G  +    P+V +RETV  +S   V SKSPNKHN+LY    PLEE + +A  +GRI   D   K   KI+ E  + G D + AK++ C        N+ ++M +G+ +L+E+K+ ++
Sbjct:  340 VFMGPERIPVDSISAGNICALVGLKEASAGETICSPDKIIE--PFEAITHISEPVITVAIEAKNTKDLPKLIEVLRQVAREDPTVKVEINEETGEHLLSGMGELHIEIITK-LKIERDAGIPVEVGQPIVVYRETVTGQS-PVVESKSPNKHNKLYFVVEPLEESVLQAYKEGRIPDVDTKRKLDDKIVQELIKAGMDPEEAKRVMCI----YEGNVLINMTRGIVHLDEVKELII 567          
The following BLAST results are available for this feature:
BLAST of CF831988 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 409
Match NameE-valueIdentityDescription
EF2_METAC8.458e-3537.61Elongation factor 2 OS=Methanosarcina acetivorans ... [more]
EF2_METMA1.884e-3438.03Elongation factor 2 OS=Methanosarcina mazei GN=fus... [more]
EF2_METTE2.461e-3438.89Elongation factor 2 OS=Methanosarcina thermophila ... [more]
EF2_METMT4.198e-3438.46Elongation factor 2 OS=Methanococcoides methyluten... [more]
EF2_METS35.482e-3436.05Elongation factor 2 OS=Methanobrevibacter smithii ... [more]
EF2_METBU5.482e-3439.57Elongation factor 2 OS=Methanococcoides burtonii (... [more]
EF2_METBF5.482e-3437.61Elongation factor 2 OS=Methanosarcina barkeri (str... [more]
EF2_METS57.160e-3435.47Elongation factor 2 OS=Metallosphaera sedula (stra... [more]
EF2_PICTO1.595e-3335.19Elongation factor 2 OS=Picrophilus torridus GN=fus... [more]
EF2_METJA3.553e-3336.44Elongation factor 2 OS=Methanocaldococcus jannasch... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS02_01C02_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01C02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF831988 ID=CF831988; Name=CF831988; organism=Citrus sinensis; type=EST; length=704bp
CCGTATTTGGATGGGAAAGAAGCAGGAAACCGTTGAGGATGTGCCTTGTG
GTAACACTGTGGCTATGGTTGGTCTCGATCAATTCATCACTAAAAATGCT
ACCTTGACTAATGAGAAGGAAGTTGATGCCCATCCCATCCGTGCTATGAA
GTTCTCTGTCTCACCTGTTGTTCGTGTGGCTGTCCAGTGCAAAGTCGCTT
CTGATCTCCCTAAGCTTGTTGAAGGTCTTAAGCGTTTGGCCAAGTCAGAT
CCTATGGTTGTCTGTACAATTGAGGAGTCTGGCGAGCACATTGTTGCTGG
TGCGGGAGAACTTCACCTTGAGATCTGTTTGAAGGATCTGCAGGACGATT
TCATGGGAGGTGCTGAAATTATTAAATCTGATCCTGTTGTGTCCTTCCGT
GAAACTGTCCTTGAGAAGTCTTGCCGCACTGTGATGAGTAAGTCTCCCAA
CAAGCATAATCGTCTCTACATGGAAGCCCGACCTCTGGAAGAAGGTCTTG
CTGAGGCCATAGATGATGGCCGCATTGGTCCAAGGGATGATCCCAAGGCT
CGATCTAAGATCTTGTCTGAGGAGTTCGGCTGGGACAAGGATCTTGCGAA
GAAGATTTGGTGTTTTGGTCCTGAGACCACTGGCCCTAACATGTTCGTTG
ATATGTGTAAGGGAGTTCAATACTTGAATGAAATTAAGGATTCTGTTGTT
GCTG
back to top