CF831988

Overview
NameCF831988
Unique NameCF831988
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length704
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF831988 vs. ExPASy Swiss-Prot
Match: EF2_THEAC (Elongation factor 2 OS=Thermoplasma acidophilum GN=fusA PE=3 SV=2)

HSP 1 Score: 140.198 bits (352), Expect = 1.034e-32
Identity = 87/234 (37.18%), Postives = 135/234 (57.69%), Query Frame = 2
Query:   11 MGKKQETVEDVPCGNTVAMVGLDQFITKNATLTNEKEVDAHPIRAMKFSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMVVCTI-EESGEHIVAGAGELHLEICLKDLQDDFMGGAEIIKSDPVVSFRETVLEKSCRTVMSKSPNKHNRLYMEARPLEEGLAEAIDDGRI---GPRDDPKARSKILSEEFGWDKDLAKKIWCFGPETTGPNMFVDMCKGVQYLNEIKDSVV 700
            +G  +  V+++  GN  A+VGL   I      + E  V   P   M     PVV +A++ K  +DLP+L+E L+ ++K+DP +   I +E+GEH+++G GELHL++ L  +++D+    E+  SDP+V +RETV EK       KSPNKHNR Y E  PL+  + +AI+DG I       D KA  ++L  + G D+D AK + C      G NM  D+ +G+QYL+E  + ++
Sbjct:  341 VGPDRIPVDEITAGNIAAIVGLKGAIAGATVSSLENMV---PFEPMIHYSEPVVTLAIEAKHTADLPRLIEVLRDISKADPSIQVDINQETGEHLISGMGELHLDVTLYRIKNDYK--VEVETSDPIVVYRETV-EKKGGPFEGKSPNKHNRFYFEVEPLKPEVIQAIEDGDIPQGSKFKDKKALVELLVSK-GIDRDEAKGLVC----VEGTNMMFDVTRGIQYLDETMELLI 563          
BLAST of CF831988 vs. ExPASy Swiss-Prot
Match: EF2_NATPD (Elongation factor 2 OS=Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) GN=fusA PE=3 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 1.350e-32
Identity = 86/234 (36.75%), Postives = 132/234 (56.41%), Query Frame = 2
Query:    5 IWMGKKQETVEDVPCGNTVAMVGLDQFITKNATLTNEKEVDAHPIRAMKFSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMVVCTI-EESGEHIVAGAGELHLEICLKDLQDDFMGGAEIIKSDPVVSFRETVLEKSCRTVMSKSPNKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKARSKILSEEFGWDKDLAKKIWCFGPETT-GPNMFVDMCKGVQYLNEIKDSVV 700
            I+MG ++E VE VP GN  A+ GL   I  +        V+  P  +++    PV+  +V+ K   DLPKL+E L+++AK DP +   I E++GEH+++G GELHLE+  + ++ +   G  +   +P+V FRE   ++S R V  +SPN HNR Y+   PLE+ + E I  G +   D P+   +    E G DKD A+ +     ET    N+F+D  KG+Q+LNE  + VV
Sbjct:  342 IYMGGEREEVERVPAGNIAAVTGLKDAIAGSTV----SSVEMTPFESIEHISEPVITKSVEAKNMDDLPKLIETLQQVAKEDPTIQIEINEDTGEHLISGQGELHLEVITQRIERN--QGIPVNTGEPIVVFREAPQQES-REVEGRSPNNHNRFYITVEPLEDDIVETIKMGDVS-MDMPELERREELMEQGMDKDTAQNV-----ETIHNTNVFIDDTKGIQHLNETMELVV 562          
BLAST of CF831988 vs. ExPASy Swiss-Prot
Match: EF2_SULAC (Elongation factor 2 OS=Sulfolobus acidocaldarius GN=fusA PE=1 SV=3)

HSP 1 Score: 135.191 bits (339), Expect = 3.326e-31
Identity = 81/240 (33.75%), Postives = 135/240 (56.25%), Query Frame = 2
Query:    5 IWMGKKQETVEDVPCGNTVAMVGLDQFITKNATLTNEKEVDAH-------PIRAMKFSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMVVCTI-EESGEHIVAGAGELHLEICLKDLQDDFMGGAEIIKSDPVVSFRETVLEKSCRTVMSKSPNKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKARSKILSEEFGWDKDLAKKIWCFGPETTGPNMFVDMCKGVQYLNEIKDSVV 700
            ++MG  +E  E++P GN  A +G+D      A  + E  VD             + +   PVV ++V+ +   DL K+++ L++L+  D  +V  I EE+GE++++G G LHLE+ L+ L++++  G +++ + P+V +RE++  KS +    KSPNKHN+LY+   PL     + I +G I    D K  +KIL ++  WD D AKKI          N+F+D   GVQ+L EI D+++
Sbjct:  342 LYMGAIRELAEEIPVGNIAAALGMD------AARSGETGVDIRFKDSVLGSFEKLHYISEPVVTISVEPRNPKDLTKMIDALRKLSIEDSNLVVKINEETGEYLLSGMGFLHLEVSLQLLKENY--GLDVVTTPPIVVYRESIRNKS-QVFEGKSPNKHNKLYISVEPLNNQTIDLIANGTIKEDMDNKEMAKILRDQAEWDYDEAKKIVAIDENI---NVFIDATSGVQHLREIMDTLL 569          
BLAST of CF831988 vs. ExPASy Swiss-Prot
Match: EF2_THEVO (Elongation factor 2 OS=Thermoplasma volcanium GN=fusA PE=3 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 7.409e-31
Identity = 81/233 (34.76%), Postives = 133/233 (57.08%), Query Frame = 2
Query:   11 MGKKQETVEDVPCGNTVAMVGLDQFITKNATLTNEKEVDAHPIRAMKFSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMVVCTI-EESGEHIVAGAGELHLEICLKDLQDDFMGGAEIIKSDPVVSFRETVLEKSCRTVMSKSPNKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKARSKILSE--EFGWDKDLAKKIWCFGPETTGPNMFVDMCKGVQYLNEIKDSVV 700
            +G  +  VE+V  GN  A+VGL   I  +   + E   +  P   M     PVV +A++ K  +DLP+L++ L+ ++K+DP +   I +E+GEH+++G GELHL++ L  +++D+    E+  S+P+V +RETV EK       KSPNKHNR Y E  PL+  + +AI+DG I      K +  I+      G D++ A+ + C      G N+  D+ +G+QYL+E  + ++
Sbjct:  341 VGPDRIPVEEVTAGNIAAIVGLKGAIAGSTVSSIE---NMEPFEPMIHYSEPVVTLAIEAKHTADLPRLIDVLRDISKADPSIQVDINQETGEHLISGMGELHLDVTLYRIKNDYK--IEVETSEPIVVYRETV-EKKGGPFEGKSPNKHNRFYFEVEPLKPEVIQAIEDGDIPQGSKFKDKKTIIETLVSKGIDREEARGLVC----VEGTNIMFDVTRGIQYLDETMELLI 563          
BLAST of CF831988 vs. ExPASy Swiss-Prot
Match: EF2_HALMA (Elongation factor 2 OS=Haloarcula marismortui GN=fusA PE=3 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 1.264e-30
Identity = 83/233 (35.62%), Postives = 132/233 (56.65%), Query Frame = 2
Query:    5 IWMGKKQETVEDVPCGNTVAMVGLDQFITKNATLTNEKEVDAHPIRAMKFSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMVVCTI-EESGEHIVAGAGELHLEICLKDLQDDFMGGAEIIKSDPVVSFRETVLEKSCRTVMSKSPNKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKARSKILSEEFGWDKDLAKKIWCFGPETTGPNMFVDMCKGVQYLNEIKDSVV 700
            I+MG ++E V+ VP GN  A+ GL   I   +T+++E+     P  +++    PV+  +V+ +   DLPKL+E L+++AK DP +   I E++GEH+++G GELHLE+  + ++ +   G  I   +P+V +RE   E S R V  +SPN HNR Y+   PL E + E I  G     D P+   +   +E G DKD ++ I        G N+ +D  KG+Q+LNE  + V+
Sbjct:  341 IYMGGEREEVDRVPAGNIAAVTGLKDAIA-GSTVSSEEMT---PFESIEHISEPVITKSVEAQNMDDLPKLIETLQQVAKEDPTIQVEINEDTGEHLISGQGELHLEVIGQRIERN--QGIPINTGEPIVVYREAPQEDS-REVEGRSPNNHNRFYISIEPLGEDIVETIKMGE-ASMDMPELERREALQEAGMDKDDSQNI----EHIHGTNILLDETKGIQHLNETMELVI 561          
BLAST of CF831988 vs. ExPASy Swiss-Prot
Match: EF2_METMP (Elongation factor 2 OS=Methanococcus maripaludis GN=fusA PE=3 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 1.651e-30
Identity = 81/236 (34.32%), Postives = 134/236 (56.78%), Query Frame = 2
Query:    5 IWMGKKQETVEDVPCGNTVAMVGLDQFITKNATLTNEKEVDAHPIRAMKFSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMVVCTI-EESGEHIVAGAGELHLEICLKDLQDDFMGGAEIIKSDPVVSFRETVLEKSCRTVMSKSPNKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPK---ARSKILSEEFGWDKDLAKKIWCFGPETTGPNMFVDMCKGVQYLNEIKDSVV 700
            I+MG ++  V  +  GN  A+ GL +  T   T+ +  E+      ++  +  PV+ VA++ K   DLPKL+E L+++A+ D  V   I EE+GEH+++G GELH+E+ + + +    GG E+   +P+V +RET++  S   +  KSPNKHN+LYM A P+EE +  A  +G++   D  K   A  +    E G +KD AKK+          NM V+M +G+  L+E ++ ++
Sbjct:  340 IFMGAERVQVPSISAGNICALTGLRE-ATAGETVCSPSEILEPGFESLSHTSEPVITVAIEAKNTKDLPKLIEILRQIAREDNTVRVEINEETGEHLISGMGELHIEV-ITNTKIGRDGGIEVDVGEPIVVYRETIMGTSPE-IEGKSPNKHNKLYMIAEPMEESVYAAYVEGKLHDEDYKKKTTADGEARLVEAGLEKDQAKKVM----SIYNGNMIVNMTRGIVQLDEARELII 568          
BLAST of CF831988 vs. ExPASy Swiss-Prot
Match: EF2_METM5 (Elongation factor 2 OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=fusA PE=3 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 1.651e-30
Identity = 81/236 (34.32%), Postives = 134/236 (56.78%), Query Frame = 2
Query:    5 IWMGKKQETVEDVPCGNTVAMVGLDQFITKNATLTNEKEVDAHPIRAMKFSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMVVCTI-EESGEHIVAGAGELHLEICLKDLQDDFMGGAEIIKSDPVVSFRETVLEKSCRTVMSKSPNKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPK---ARSKILSEEFGWDKDLAKKIWCFGPETTGPNMFVDMCKGVQYLNEIKDSVV 700
            I+MG ++  V  +  GN  A+ GL +  T   T+ +  E+      ++  +  PV+ VA++ K   DLPKL+E L+++A+ D  V   I EE+GEH+++G GELH+E+ + + +    GG E+   +P+V +RET++  S   +  KSPNKHN+LYM A P+EE +  A  +G++   D  K   A  +    E G +KD AKK+          NM V+M +G+  L+E ++ ++
Sbjct:  340 IFMGAERVQVPSISAGNICALTGLRE-ATAGETVCSPSEILEPGFESLSHTSEPVITVAIEAKNTKDLPKLIEILRQIAREDNTVRVEINEETGEHLISGMGELHIEV-ITNTKIGRDGGIEVDVGEPIVVYRETIMGTSPE-IEGKSPNKHNKLYMIAEPMEESVYAAYVEGKLHDEDYKKKTTADGEARLVEAGLEKDQAKKVM----SIYNGNMIVNMTRGIVQLDEARELII 568          
BLAST of CF831988 vs. ExPASy Swiss-Prot
Match: EF2_METM7 (Elongation factor 2 OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=fusA PE=3 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 2.156e-30
Identity = 82/236 (34.75%), Postives = 133/236 (56.36%), Query Frame = 2
Query:    5 IWMGKKQETVEDVPCGNTVAMVGLDQFITKNATLTNEKEVDAHPIRAMKFSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMVVCTI-EESGEHIVAGAGELHLEICLKDLQDDFMGGAEIIKSDPVVSFRETVLEKSCRTVMSKSPNKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPK---ARSKILSEEFGWDKDLAKKIWCFGPETTGPNMFVDMCKGVQYLNEIKDSVV 700
            I+MG ++  V  +  GN  A+ GL +  T   T+ +  E+      ++  +  PV+ VA++ K   DLPKL+E L+++A+ D  V   I EE+GEH+++G GELH+E+ + + +    GG E+   +P+V +RET+   S   +  KSPNKHN+LYM A P++E +  A  +G+I   D  K   A  +    E G DKD AKK+          NM V+M +G+  L+E ++ ++
Sbjct:  340 IFMGAERVQVPSISAGNICALTGLRE-ATAGETVCSPSEILEPGFESLTHTSEPVITVAIEAKNTKDLPKLIEILRQIAREDNTVRVEINEETGEHLISGMGELHIEV-ITNTKIGRDGGIEVDVGEPIVVYRETITGTSPE-IEGKSPNKHNKLYMIAEPMDESVYAAYVEGKIHDEDYKKKTTADGEARLVEAGLDKDQAKKVM----SIYNGNMIVNMTRGIVQLDEARELII 568          
BLAST of CF831988 vs. ExPASy Swiss-Prot
Match: SN114_SCHPO (114 kDa U5 small nuclear ribonucleoprotein component homolog OS=Schizosaccharomyces pombe GN=cwf10 PE=1 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 4.803e-30
Identity = 77/229 (33.62%), Postives = 126/229 (55.02%), Query Frame = 2
Query:   32 VEDVPCGNTVAMVGLDQFITKNATLTNEK-EVDAHPIRAMKFSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMVVCTIEESGEHIVAGAGELHLEICLKDLQDDFMGGAEIIKSDPVVSFRETVLEKSCRTVMSKSPNKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKARSKILSEEFGWDKDLAKKIWCFGPETTGPNMF------VDMCKGVQYLNEIKDSV 697
            V+    G  V + G+D  I+K AT+ ++  + D +  R +      V +VAV+    S+LPKL++GL++  KS P+ +  +EESGEH + G GE++++  L DL+  +    EI  SDPV  F ET ++ S     S +PNK NR+ M   PLE+G++  I++G++      K  S+   + + WD   ++ IW FGP+  G N+        D+ K V  LN +K+ +
Sbjct:  554 VDGAVAGMLVLLGGVDNSISKTATIVSDNLKDDPYIFRPIAHMSESVFKVAVEPHNPSELPKLLDGLRKTNKSYPLSITKVEESGEHTIFGTGEMYMDCLLYDLRTLY-SEIEIRVSDPVARFCETAVDTSSIKCFSDTPNKKNRITMVVEPLEKGISNDIENGKVNINWPQKRISEFFQKNYDWDLLASRSIWAFGPDDRGTNILRDDTLSTDVDKNV--LNSVKEYI 779          
BLAST of CF831988 vs. ExPASy Swiss-Prot
Match: EF2_HALSA (Elongation factor 2 OS=Halobacterium salinarium GN=fusA PE=3 SV=2)

HSP 1 Score: 131.339 bits (329), Expect = 4.803e-30
Identity = 77/233 (33.05%), Postives = 134/233 (57.51%), Query Frame = 2
Query:    5 IWMGKKQETVEDVPCGNTVAMVGLDQFITKNATLTNEKEVDAHPIRAMKFSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMVVCTI-EESGEHIVAGAGELHLEICLKDLQDDFMGGAEIIKSDPVVSFRETVLEKSCRTVMSKSPNKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKARSKILSEEFGWDKDLAKKIWCFGPETTGPNMFVDMCKGVQYLNEIKDSVV 700
            I+MG ++E V++VP GN  A+ GL   I   +T++NE+     P  ++     PV+  +++ +   DLPKL+E L++++K DP +   I E++GEH+++G GELHLE+  + ++ +   G  +   +P+V +RET    S + V   SPN+HN+ Y+    L + + E I  G +   D P+   + + +E G DK+ ++ +        G N+F+D  KG+Q+LNE  + VV
Sbjct:  341 IYMGGEREEVDEVPAGNIAAVTGLKDAIA-GSTVSNEEMT---PFESIDHISEPVITKSIEAQNMDDLPKLIETLRQVSKEDPTISIEINEDTGEHLISGQGELHLEVQTQRIERN--QGIPVTTGEPIVVYRETPTSDS-QEVEGVSPNRHNKFYITVEQLSDDVLEEIRLGEVS-MDMPEQERREVLQEAGMDKETSQDV----ENIIGRNIFIDDTKGIQHLNETMELVV 561          
The following BLAST results are available for this feature:
BLAST of CF831988 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 409
Match NameE-valueIdentityDescription
EF2_THEAC1.034e-3237.18Elongation factor 2 OS=Thermoplasma acidophilum GN... [more]
EF2_NATPD1.350e-3236.75Elongation factor 2 OS=Natronomonas pharaonis (str... [more]
EF2_SULAC3.326e-3133.75Elongation factor 2 OS=Sulfolobus acidocaldarius G... [more]
EF2_THEVO7.409e-3134.76Elongation factor 2 OS=Thermoplasma volcanium GN=f... [more]
EF2_HALMA1.264e-3035.62Elongation factor 2 OS=Haloarcula marismortui GN=f... [more]
EF2_METMP1.651e-3034.32Elongation factor 2 OS=Methanococcus maripaludis G... [more]
EF2_METM51.651e-3034.32Elongation factor 2 OS=Methanococcus maripaludis (... [more]
EF2_METM72.156e-3034.75Elongation factor 2 OS=Methanococcus maripaludis (... [more]
SN114_SCHPO4.803e-3033.62114 kDa U5 small nuclear ribonucleoprotein compone... [more]
EF2_HALSA4.803e-3033.05Elongation factor 2 OS=Halobacterium salinarium GN... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_01C02_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01C02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF831988 ID=CF831988; Name=CF831988; organism=Citrus sinensis; type=EST; length=704bp
CCGTATTTGGATGGGAAAGAAGCAGGAAACCGTTGAGGATGTGCCTTGTG
GTAACACTGTGGCTATGGTTGGTCTCGATCAATTCATCACTAAAAATGCT
ACCTTGACTAATGAGAAGGAAGTTGATGCCCATCCCATCCGTGCTATGAA
GTTCTCTGTCTCACCTGTTGTTCGTGTGGCTGTCCAGTGCAAAGTCGCTT
CTGATCTCCCTAAGCTTGTTGAAGGTCTTAAGCGTTTGGCCAAGTCAGAT
CCTATGGTTGTCTGTACAATTGAGGAGTCTGGCGAGCACATTGTTGCTGG
TGCGGGAGAACTTCACCTTGAGATCTGTTTGAAGGATCTGCAGGACGATT
TCATGGGAGGTGCTGAAATTATTAAATCTGATCCTGTTGTGTCCTTCCGT
GAAACTGTCCTTGAGAAGTCTTGCCGCACTGTGATGAGTAAGTCTCCCAA
CAAGCATAATCGTCTCTACATGGAAGCCCGACCTCTGGAAGAAGGTCTTG
CTGAGGCCATAGATGATGGCCGCATTGGTCCAAGGGATGATCCCAAGGCT
CGATCTAAGATCTTGTCTGAGGAGTTCGGCTGGGACAAGGATCTTGCGAA
GAAGATTTGGTGTTTTGGTCCTGAGACCACTGGCCCTAACATGTTCGTTG
ATATGTGTAAGGGAGTTCAATACTTGAATGAAATTAAGGATTCTGTTGTT
GCTG
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