CF831988

Overview
NameCF831988
Unique NameCF831988
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length704
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF831988 vs. ExPASy Swiss-Prot
Match: EF2_HALS3 (Elongation factor 2 OS=Halobacterium salinarum (strain ATCC 29341 / DSM 671 / R1) GN=fusA PE=3 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 4.803e-30
Identity = 77/233 (33.05%), Postives = 134/233 (57.51%), Query Frame = 2
Query:    5 IWMGKKQETVEDVPCGNTVAMVGLDQFITKNATLTNEKEVDAHPIRAMKFSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMVVCTI-EESGEHIVAGAGELHLEICLKDLQDDFMGGAEIIKSDPVVSFRETVLEKSCRTVMSKSPNKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKARSKILSEEFGWDKDLAKKIWCFGPETTGPNMFVDMCKGVQYLNEIKDSVV 700
            I+MG ++E V++VP GN  A+ GL   I   +T++NE+     P  ++     PV+  +++ +   DLPKL+E L++++K DP +   I E++GEH+++G GELHLE+  + ++ +   G  +   +P+V +RET    S + V   SPN+HN+ Y+    L + + E I  G +   D P+   + + +E G DK+ ++ +        G N+F+D  KG+Q+LNE  + VV
Sbjct:  341 IYMGGEREEVDEVPAGNIAAVTGLKDAIA-GSTVSNEEMT---PFESIDHISEPVITKSIEAQNMDDLPKLIETLRQVSKEDPTISIEINEDTGEHLISGQGELHLEVQTQRIERN--QGIPVTTGEPIVVYRETPTSDS-QEVEGVSPNRHNKFYITVEQLSDDVLEEIRLGEVS-MDMPEQERREVLQEAGMDKETSQDV----ENIIGRNIFIDDTKGIQHLNETMELVV 561          
BLAST of CF831988 vs. ExPASy Swiss-Prot
Match: EF2_METM6 (Elongation factor 2 OS=Methanococcus maripaludis (strain C6 / ATCC BAA-1332) GN=fusA PE=3 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 4.066e-29
Identity = 79/236 (33.47%), Postives = 133/236 (56.36%), Query Frame = 2
Query:    5 IWMGKKQETVEDVPCGNTVAMVGLDQFITKNATLTNEKEVDAHPIRAMKFSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMVVCTI-EESGEHIVAGAGELHLEICLKDLQDDFMGGAEIIKSDPVVSFRETVLEKSCRTVMSKSPNKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPK---ARSKILSEEFGWDKDLAKKIWCFGPETTGPNMFVDMCKGVQYLNEIKDSVV 700
            I+MG ++  V  +  GN  A+ GL +  T   T+ +  E+      ++  +  PV+ VA++ K   DLPKL+E L+++A+ D  V   I EE+GEH+++G GELH+E+ + + +    GG E+   +P+V +RET+   S   +  KSPNKHN+LYM A P++E +  A  +G+I   D  K   A  +    E G +K+ AK++          NM V+M +G+  L+E ++ ++
Sbjct:  340 IFMGAERVQVPSISAGNICALTGLRE-ATAGETVCSPSEILEPGFESLTHTSEPVITVAIEAKNTKDLPKLIEILRQIAREDNTVRVEINEETGEHLISGMGELHIEV-ITNTKIGRDGGIEVDVGEPIVVYRETITGTSPE-IEGKSPNKHNKLYMIAEPMDESVYAAYVEGKIHDEDYKKKTTADGEARLVEAGLEKEQAKRVM----SIYNGNMIVNMTRGIVQLDEARELII 568          
BLAST of CF831988 vs. ExPASy Swiss-Prot
Match: EF2_METVS (Elongation factor 2 OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=fusA PE=3 SV=2)

HSP 1 Score: 127.102 bits (318), Expect = 9.057e-29
Identity = 78/238 (32.77%), Postives = 135/238 (56.72%), Query Frame = 2
Query:    5 IWMGKKQETVEDVPCGNTVAMVGLDQFITKNATLTNEKEVDAHPIRAMKFSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMVVCTI-EESGEHIVAGAGELHLEICLKDLQDDFMGGAEIIKSDPVVSFRETVLEKSCRTVMSKSPNKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPK-----ARSKILSEEFGWDKDLAKKIWCFGPETTGPNMFVDMCKGVQYLNEIKDSVV 700
            I+MG ++  V  +  GN  A+ GL +  T   T+ +  ++      ++  +  PV+ VA++ K   DLPKL+E L+++ + D  V   I EE+GEH+++G GELH+E+ + + +    GG E+   +P++ +RET+   S   +  KSPNKHN+LYM A P+EE +  A  +G+I   D  K     A ++++  E G +++ AKK+          NM V+M KG+  L+E ++ ++
Sbjct:  340 IFMGAERVQVPSISAGNICALTGLRE-ATAGETVCSPSKILEPGFESLTHTSEPVITVAIEAKNTKDLPKLIEILRQIGREDNTVRIEINEETGEHLISGMGELHIEV-ITNTKIGRDGGIEVDVGEPIIVYRETITGTSPE-IEGKSPNKHNKLYMIAEPMEESVYAAYVEGKIHDEDFKKKTNVDAETRLI--EAGLEREQAKKVM----SIYNGNMIVNMTKGIVQLDEARELII 568          
BLAST of CF831988 vs. ExPASy Swiss-Prot
Match: ETUD1_MOUSE (Elongation factor Tu GTP-binding domain-containing protein 1 OS=Mus musculus GN=Eftud1 PE=2 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 7.935e-25
Identity = 83/281 (29.54%), Postives = 129/281 (45.91%), Query Frame = 2
Query:   11 MGKKQETVEDVPCGNTVAMVGLDQFITKNATLTNEKEVDAHPIRAMKFSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMVVCTIEESGEHIVAGAGELHLEICLKDLQDDFMGGAEIIKSDPVVSFRETVLE------------------------------------KSCRTVMSKSPNKHNRLYMEARPLEEG-----------------LAEAIDDGRIGPRDDPKARSKILSEEFGWDKDL--------AKKIWCFGPETTGPNMFVDMCKGVQ 670
            MG++ E +E+VP GN + + GL  F+ K+ATL +       P   + F  +P+VRVAV+ K  S++P+LV+G+K L ++DP V   I+E+GEH++  AGE+HL+ CL DL++ F     I  S+P++ FRET+ +                                     S   +   +PNK   L + A PL E                  L  ++++GR       K + KI   +   +K L          +IW FGP   GPN+ V   +  Q
Sbjct:  567 MGRELEDLEEVPPGNVLGIGGLQDFVLKSATLCSLPSCP--PFIPLNFEATPIVRVAVEPKHPSEMPQLVKGMKLLNQADPCVQVLIQETGEHVLVTAGEVHLQRCLDDLRERF-AKIHISVSEPIIPFRETITKPPKVDMVNEEIGRQQKVAVIHQTKEEQSKIPEGIHVDSDGLITIPTPNKLATLSVRAIPLPEEVTRILEENSDLIRSMELLTSSLNEGRNTQAIHQKTQEKIWEFKGKLEKHLTGRKWRNTVDQIWSFGPRKCGPNILVSRSEDFQ 844          
BLAST of CF831988 vs. ExPASy Swiss-Prot
Match: ETUD1_HUMAN (Elongation factor Tu GTP-binding domain-containing protein 1 OS=Homo sapiens GN=EFTUD1 PE=1 SV=2)

HSP 1 Score: 113.62 bits (283), Expect = 1.036e-24
Identity = 79/281 (28.11%), Postives = 132/281 (46.98%), Query Frame = 2
Query:   11 MGKKQETVEDVPCGNTVAMVGLDQFITKNATLTNEKEVDAHPIRAMKFSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMVVCTIEESGEHIVAGAGELHLEICLKDLQDDFMGGAEIIKSDPVVSFRETVLE------------------------------------KSCRTVMSKSPNKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKARSKI-----------LSEEFGWD--------------KDLAKKIWCFGPETTGPNMFVDMCKGVQ 670
            MG++ E +E+VP GN + + GL  F+ K+ATL +       P   + F  +P+VRVAV+ K  S++P+LV+G+K L ++DP V   I+E+GEH++  AGE+HL+ CL DL++ F     I  S+P++ FRET+ +                                     S   +   +PNK   L + A PL E + + +++     R   +  S +            ++E  W+              +++  +IW FGP   GPN+ V+  +  Q
Sbjct:  567 MGRELEYLEEVPPGNVLGIGGLQDFVLKSATLCSLPSCP--PFIPLNFEATPIVRVAVEPKHPSEMPQLVKGMKLLNQADPCVQILIQETGEHVLVTAGEVHLQRCLDDLKERF-AKIHISVSEPIIPFRETITKPPKVDMVNEEIGKQQKVAVIHQMKEDQSKIPEGIQVDSDGLITITTPNKLATLSVRAMPLPEEVTQILEENSDLIRSMEQLTSSLNEGENTHMIHQKTQEKIWEFKGKLEQHLTGRRWRNIVDQIWSFGPRKCGPNILVNKSEDFQ 844          
BLAST of CF831988 vs. ExPASy Swiss-Prot
Match: EF2_META3 (Elongation factor 2 OS=Methanococcus aeolicus (strain Nankai-3 / ATCC BAA-1280) GN=fusA PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.036e-24
Identity = 75/236 (31.78%), Postives = 127/236 (53.81%), Query Frame = 2
Query:    5 IWMGKKQETVEDVPCGNTVAMVGLDQFITKNATLTNEKEVDAHPIRAMKFSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMVVCTI-EESGEHIVAGAGELHLEICLKDLQDDFMGGAEIIKSDPVVSFRETVLEKSCRTVMSKSPNKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKARSKILSE---EFGWDKDLAKKIWCFGPETTGPNMFVDMCKGVQYLNEIKDSVV 700
            ++MG ++  V  V  GN  A+ GL +  +   T+ +   +      ++     PV+ VA++ K   DLPKL++ L+++AK D  V   I EE+GEH+++G GELH+E+ + + +     G E+   +P+V +RE V   S   V  KSPNKHNRLY  A PL+E +  A  +G I   D  K   K +     E G +++ AK++          N+ ++M +G+  L+E ++ ++
Sbjct:  340 VFMGAERVQVPSVSAGNICALTGLKE-ASAGETVCSPNTILDPSFESITHVSEPVITVAIEAKNTKDLPKLIDVLRQIAKEDNTVRVEINEETGEHLISGMGELHIEV-ITNTKIGRDAGVEVDVGEPIVVYREAVNGVSPE-VEGKSPNKHNRLYFVAEPLDECVYNAHVEGLIKDEDFKKKTPKEVETKLVEIGMNREEAKRVMTI----YEGNVLLNMTRGIVQLDEARELII 568          
BLAST of CF831988 vs. ExPASy Swiss-Prot
Match: RIA1_YEAST (Ribosome assembly protein 1 OS=Saccharomyces cerevisiae GN=RIA1 PE=1 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.401e-21
Identity = 60/139 (43.17%), Postives = 84/139 (60.43%), Query Frame = 2
Query:    5 IWMGKKQETVEDVPCGNTVAMVGLDQFITKNATLTNEKEVDAHPIRAMKFSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMVVCTIEESGEHIVAGAGELHLEICLKDLQDDFMGGAEIIKSDPVVSFRETVLEKS 421
            ++MGK+   ++  P GN V + GL   + K+ TL  EK V    +  + F  +P+VRVAV+     ++ KLV GLK L ++DP V   +E +GEHI+  AGELHLE CLKDL + F  G EI  S+P + +RET L  S
Sbjct:  625 LFMGKELVPLDVCPSGNIVGIRGLAGKVLKSGTLI-EKGVQGVNLAGVNFHFTPIVRVAVEPANPVEMSKLVRGLKLLDQADPCVHTYVENTGEHILCTAGELHLERCLKDLTERF-AGIEITHSEPAIPYRETFLSAS 761          
BLAST of CF831988 vs. ExPASy Swiss-Prot
Match: EF2_NANEQ (Elongation factor 2 OS=Nanoarchaeum equitans GN=fusA PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.549e-20
Identity = 71/243 (29.22%), Postives = 130/243 (53.50%), Query Frame = 2
Query:    5 IWMGKKQETVEDVPCGNTVAMVGLDQFITKNATLTNEKE---VDAHPIRAMKFSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMVVCTI-EESGEHIVAGAGELHLEICLKDLQDDFMGGAEIIKSDPVVSFRETVLEKSCRTVMSKSPNKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKARSKILSEE-------FGWDKDLAKKIWCFGPETTGPNMFVDMCKGVQYLNEIKDSVV 700
            ++ G ++  +E+   GN +A+ G+    +    +  E +    +  P  A+K    PVV  A++ K   DLPKL+E LK + K DP +   I +ESG+ +++G G+LHLEI    +++DF    +II S+P+V +RE+V +     V  KSPNK N+ Y+    + + L   + + ++   + P+ + K ++E+        G+ ++ A++      E    NMF DM +G+ ++ E+ D V+
Sbjct:  346 VFKGIQKIQIEEAKAGNIIAISGVRDLQSGETIVEPEPDGSKPNIPPFEAIKHIFDPVVTKAIEPKDPRDLPKLIEVLKLIQKEDPTLKVEIDQESGQILISGLGDLHLEIVEYRIKNDFK--VDIITSNPIVVYRESV-KGQAGPVEGKSPNKLNKFYITVEKMPDELYWKLRE-KLLKGELPEGKIKKMNEDIIKHLMSLGFTREEAQRCKVIYRE----NMFFDMTRGIIHIGEVIDMVM 580          
BLAST of CF831988 vs. ExPASy Swiss-Prot
Match: RIA1_SCHPO (Ribosome assembly protein 1 OS=Schizosaccharomyces pombe GN=ria1 PE=2 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 3.814e-19
Identity = 79/267 (29.59%), Postives = 120/267 (44.94%), Query Frame = 2
Query:    5 IWMGKKQETVEDVPCGNTVAMVGLDQFITKNATLTNEKEVDAHPIRAMKFSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMVVCTIEESGEHIVAGAGELHLEICLKDLQDDFMGGAEIIKSDPVVSFRETV-------------------------------------------LEKSCRTVMSKSPN--KHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKARSKILSEE---FGWDKDLAKKIWCFGPETTGPNMFVDMCK 661
            + MG++   +E VP GN  A+ GL   + + ATL +    +   +  +   + P+VRVA++     ++ KLV GL  L ++DP V   +EE+GEH++  AGE+HLE CLKDL++ F    EI  S P+V +RET                                            L K  +T+ + S N  K NR  + +  L + + E +      P    +  SK+L EE    G  K+    I  FGP+  GPN+  D  K
Sbjct:  511 LMMGQELVYLETVPAGNVFAIGGLAGTVLRTATLCSSP--NGPNLVGVTQQMEPIVRVALEPVRPFEMNKLVTGLDMLNQADPCVQIAVEENGEHVIMCAGEIHLERCLKDLRERF-AKIEIQASQPLVPYRETTIATPDLLAKNKELSIGFVTATLPVGGVTIGITVTPLSGSVVDFLLKHSKTIENVSSNFSKKNRNVVVSESLTKSMEEVLT-----PEKFYERLSKLLEEENSDLGELKNHLDSIIAFGPKRVGPNILFDKTK 769          
BLAST of CF831988 vs. ExPASy Swiss-Prot
Match: SN114_YEAST (114 kDa U5 small nuclear ribonucleoprotein component OS=Saccharomyces cerevisiae GN=SNU114 PE=1 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.039e-16
Identity = 60/223 (26.91%), Postives = 111/223 (49.78%), Query Frame = 2
Query:   14 GKKQETVEDVPCGNTVAMVGLDQFITKNATLTNEK-EVDAHPIRAMK---FSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMVVCTIEESGEHIVAGAGELHLEICLKDLQDDFMGGAEIIKSDPVVSFRETVLEKSCRTV-MSKSPNKHNR-------LYMEARPLEEGLAEAIDDGRIGP----------RDDPKARSKILSEEFGWDKDLAKKIWCF 616
            G+    V +   G  V + G+     K+ATL + K + D   ++  K   +    V ++ +Q  +  +LPKL++ L +++K  P V+  +EESGEH++ G GEL+++  L DL+  +    EI  SDP+  F E+   +S  ++ +S S ++          + + A P++  + + +    +G            D+P+  SKIL  E+GWD   ++ +W F
Sbjct:  547 GRYVYPVHEAHKGQIVLIKGISSAYIKSATLYSVKSKEDMKQLKFFKPLDYITEAVFKIVLQPLLPRELPKLLDALNKISKYYPGVIIKVEESGEHVILGNGELYMDCLLYDLRASY-AKIEIKISDPLTVFSESCSNESFASIPVSNSISRLGEENLPGLSISVAAEPMDSKMIQDLSRNTLGKGQNCLDIDGIMDNPRKLSKILRTEYGWDSLASRNVWSF 768          
The following BLAST results are available for this feature:
BLAST of CF831988 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 409
Match NameE-valueIdentityDescription
EF2_HALS34.803e-3033.05Elongation factor 2 OS=Halobacterium salinarum (st... [more]
EF2_METM64.066e-2933.47Elongation factor 2 OS=Methanococcus maripaludis (... [more]
EF2_METVS9.057e-2932.77Elongation factor 2 OS=Methanococcus vannielii (st... [more]
ETUD1_MOUSE7.935e-2529.54Elongation factor Tu GTP-binding domain-containing... [more]
ETUD1_HUMAN1.036e-2428.11Elongation factor Tu GTP-binding domain-containing... [more]
EF2_META31.036e-2431.78Elongation factor 2 OS=Methanococcus aeolicus (str... [more]
RIA1_YEAST1.401e-2143.17Ribosome assembly protein 1 OS=Saccharomyces cerev... [more]
EF2_NANEQ1.549e-2029.22Elongation factor 2 OS=Nanoarchaeum equitans GN=fu... [more]
RIA1_SCHPO3.814e-1929.59Ribosome assembly protein 1 OS=Schizosaccharomyces... [more]
SN114_YEAST1.039e-1626.91114 kDa U5 small nuclear ribonucleoprotein compone... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_01C02_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01C02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF831988 ID=CF831988; Name=CF831988; organism=Citrus sinensis; type=EST; length=704bp
CCGTATTTGGATGGGAAAGAAGCAGGAAACCGTTGAGGATGTGCCTTGTG
GTAACACTGTGGCTATGGTTGGTCTCGATCAATTCATCACTAAAAATGCT
ACCTTGACTAATGAGAAGGAAGTTGATGCCCATCCCATCCGTGCTATGAA
GTTCTCTGTCTCACCTGTTGTTCGTGTGGCTGTCCAGTGCAAAGTCGCTT
CTGATCTCCCTAAGCTTGTTGAAGGTCTTAAGCGTTTGGCCAAGTCAGAT
CCTATGGTTGTCTGTACAATTGAGGAGTCTGGCGAGCACATTGTTGCTGG
TGCGGGAGAACTTCACCTTGAGATCTGTTTGAAGGATCTGCAGGACGATT
TCATGGGAGGTGCTGAAATTATTAAATCTGATCCTGTTGTGTCCTTCCGT
GAAACTGTCCTTGAGAAGTCTTGCCGCACTGTGATGAGTAAGTCTCCCAA
CAAGCATAATCGTCTCTACATGGAAGCCCGACCTCTGGAAGAAGGTCTTG
CTGAGGCCATAGATGATGGCCGCATTGGTCCAAGGGATGATCCCAAGGCT
CGATCTAAGATCTTGTCTGAGGAGTTCGGCTGGGACAAGGATCTTGCGAA
GAAGATTTGGTGTTTTGGTCCTGAGACCACTGGCCCTAACATGTTCGTTG
ATATGTGTAAGGGAGTTCAATACTTGAATGAAATTAAGGATTCTGTTGTT
GCTG
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