CF831992

Overview
NameCF831992
Unique NameCF831992
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length693
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CF831992_ssr112 microsatellite CF831992_ssr112:112..123. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig6180 contig Csv1_Contig6180:17..708. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF831992 vs. ExPASy Swiss-Prot
Match: RL7_YARLI (60S ribosomal protein L7 OS=Yarrowia lipolytica GN=RPL7 PE=3 SV=1)

HSP 1 Score: 204.527 bits (519), Expect = 9.490e-56
Identity = 95/139 (68.35%), Postives = 119/139 (85.61%), Query Frame = 3
Query:  276 EAKLKGGFYVNPEAKLLFIIRIRGINAVDPKTKKILQLLRLRQIFNGVFLKVNKATLNMLHRVEPYVTYGYPNLKSVKELIYKRGYGKLNKQRIALTDNSIIEQALGQHGIICMEDLIHEILTVGPHFKEANNFLWPFK 692
            EAKL G FYV  E KL+F+IRI+GI+ + PK +K+LQLLRL QI NGVF+++ KAT  +L  VEPY+ +GYPNL SV++L+YKRGYGK+NKQRI L+DN+IIE+ALG++GIICMEDLIHEI TVGP FK+A+NFLWPFK
Sbjct:   74 EAKLNGTFYVPAEPKLVFVIRIKGISKMAPKPRKVLQLLRLHQINNGVFVRITKATAELLRIVEPYIAFGYPNLASVRQLVYKRGYGKVNKQRIPLSDNAIIEEALGKYGIICMEDLIHEIYTVGPAFKQASNFLWPFK 212          

HSP 2 Score: 33.8834 bits (76), Expect = 9.490e-56
Identity = 14/32 (43.75%), Postives = 23/32 (71.88%), Query Frame = 2
Query:  197 KLIYNRTKQYAKEYDEEQKELIRLKRRGQA*G 292
            K+I++R ++Y KEY E ++E IRL+R  +  G
Sbjct:   48 KVIFSRAEKYVKEYREAEREQIRLRREAKLNG 79          
BLAST of CF831992 vs. ExPASy Swiss-Prot
Match: RL7_CHICK (60S ribosomal protein L7 OS=Gallus gallus GN=RPL7 PE=2 SV=1)

HSP 1 Score: 206.453 bits (524), Expect = 3.574e-55
Identity = 97/138 (70.29%), Postives = 116/138 (84.06%), Query Frame = 3
Query:  279 AKLKGGFYVNPEAKLLFIIRIRGINAVDPKTKKILQLLRLRQIFNGVFLKVNKATLNMLHRVEPYVTYGYPNLKSVKELIYKRGYGKLNKQRIALTDNSIIEQALGQHGIICMEDLIHEILTVGPHFKEANNFLWPFK 692
            A+  G +YV  E KL F+IRIRGIN V PK +K+LQLLRLRQIFNG F+K+NKA++NML  VEPY+ +GYPNLKSV +LIYKRGYGK+NK+RIALTDNS+I + LG+ GIICMED+IHEI TVG +FK  NNFLWPFK
Sbjct:   73 ARKAGNYYVPAEPKLAFVIRIRGINGVSPKVRKVLQLLRLRQIFNGTFVKLNKASINMLRIVEPYIAWGYPNLKSVHDLIYKRGYGKINKKRIALTDNSLIRKRLGKLGIICMEDVIHEIYTVGKNFKVVNNFLWPFK 210          

HSP 2 Score: 30.0314 bits (66), Expect = 3.574e-55
Identity = 14/33 (42.42%), Postives = 19/33 (57.58%), Query Frame = 2
Query:  194 RKLIYNRTKQYAKEYDEEQKELIRLKRRGQA*G 292
            RK+IY R K Y KEY    ++ IR+ R  +  G
Sbjct:   45 RKIIYERAKAYHKEYRHMYRQEIRMARMARKAG 77          
BLAST of CF831992 vs. ExPASy Swiss-Prot
Match: RL7_CAEEL (60S ribosomal protein L7 OS=Caenorhabditis elegans GN=rpl-7 PE=1 SV=1)

HSP 1 Score: 192.971 bits (489), Expect = 2.938e-51
Identity = 88/139 (63.31%), Postives = 113/139 (81.29%), Query Frame = 3
Query:  276 EAKLKGGFYVNPEAKLLFIIRIRGINAVDPKTKKILQLLRLRQIFNGVFLKVNKATLNMLHRVEPYVTYGYPNLKSVKELIYKRGYGKLNKQRIALTDNSIIEQALGQHGIICMEDLIHEILTVGPHFKEANNFLWPFK 692
            EA+ KG FYV  E K+ F++RIRGIN + PK +K LQ+LRLRQI NGVF+K+NKATL +L  +EPYV +GYPN K++ +L+YKRGY K++  R+ +TDN+I+EQ+LG+  IIC+EDL HEI TVGPHFKEA NFLWPFK
Sbjct:   70 EAEAKGDFYVPAEHKVAFVVRIRGINQLHPKPRKALQILRLRQINNGVFVKLNKATLPLLRIIEPYVAWGYPNNKTIHDLLYKRGYAKVDGNRVPITDNTIVEQSLGKFNIICLEDLAHEIATVGPHFKEATNFLWPFK 208          

HSP 2 Score: 30.4166 bits (67), Expect = 2.938e-51
Identity = 13/29 (44.83%), Postives = 19/29 (65.52%), Query Frame = 2
Query:  206 YNRTKQYAKEYDEEQKELIRLKRRGQA*G 292
            + R ++Y +EY   QKE +RLKR  +A G
Sbjct:   47 FKRAEKYVQEYRNAQKEGLRLKREAEAKG 75          
BLAST of CF831992 vs. ExPASy Swiss-Prot
Match: RL7_ASHGO (60S ribosomal protein L7 OS=Ashbya gossypii GN=RPL7 PE=3 SV=1)

HSP 1 Score: 199.904 bits (507), Expect = 1.063e-50
Identity = 90/139 (64.75%), Postives = 117/139 (84.17%), Query Frame = 3
Query:  276 EAKLKGGFYVNPEAKLLFIIRIRGINAVDPKTKKILQLLRLRQIFNGVFLKVNKATLNMLHRVEPYVTYGYPNLKSVKELIYKRGYGKLNKQRIALTDNSIIEQALGQHGIICMEDLIHEILTVGPHFKEANNFLWPFK 692
            EAK  G +YV  + KL+F+IRI+GIN + PK +K+LQLLRL QI +GVF+KV KAT  +L  VEPYV YGYP+  ++++L+YKRGYGK+NKQRIAL++NSI+E  LG++GII ++DLIHEI+TVGPHFK+ANNFLWPFK
Sbjct:   67 EAKANGSYYVESQPKLVFVIRIKGINKIAPKPRKVLQLLRLNQINSGVFVKVTKATTELLRLVEPYVAYGYPSYSTIRQLVYKRGYGKINKQRIALSENSIVEANLGKYGIISVDDLIHEIITVGPHFKQANNFLWPFK 205          
BLAST of CF831992 vs. ExPASy Swiss-Prot
Match: RL7C_SCHPO (60S ribosomal protein L7-C OS=Schizosaccharomyces pombe GN=rpl7c PE=1 SV=1)

HSP 1 Score: 196.823 bits (499), Expect = 9.000e-50
Identity = 93/139 (66.91%), Postives = 118/139 (84.89%), Query Frame = 3
Query:  276 EAKLKGGFYVNPEAKLLFIIRIRGINAVDPKTKKILQLLRLRQIFNGVFLKVNKATLNMLHRVEPYVTYGYPNLKSVKELIYKRGYGKLNKQRIALTDNSIIEQALGQHGIICMEDLIHEILTVGPHFKEANNFLWPFK 692
            +A+ +G +YV  E KL+F+IRIRGIN + PK +KI+QLLRL QI NGVF+K NKAT  ML  VEPYVTYG PNLK+V+EL+YKRG+GK+NKQRIAL+DN+IIE ALG++ I+ +EDLIHEI TVGP+FK+A NF+WPF+
Sbjct:   76 KARAEGNYYVPDETKLVFVIRIRGINNIPPKARKIMQLLRLIQINNGVFVKFNKATKEMLQVVEPYVTYGIPNLKTVRELLYKRGFGKVNKQRIALSDNAIIEAALGKYSILSIEDLIHEIYTVGPNFKQAANFIWPFQ 214          
BLAST of CF831992 vs. ExPASy Swiss-Prot
Match: RL7_DICDI (60S ribosomal protein L7 OS=Dictyostelium discoideum GN=rpl7 PE=1 SV=3)

HSP 1 Score: 191.43 bits (485), Expect = 2.659e-49
Identity = 90/138 (65.22%), Postives = 112/138 (81.16%), Query Frame = 3
Query:  279 AKLKGGFYVNPEAKLLFIIRIRGINAVDPKTKKILQLLRLRQIFNGVFLKVNKATLNMLHRVEPYVTYGYPNLKSVKELIYKRGYGKLNKQRIALTDNSIIEQALGQHGIICMEDLIHEILTVGPHFKEANNFLWPFK 692
            AK  G FYV P AK+ F+IRIRGIN V PK +K+L+LLRL Q+ NGVF+K+NKA++NML  VEPYV YG+PNLKS+KELIYKRG+ K++ QRI LT N ++E+ LG+ GIIC+ED+IHEI T G HFK+ NN LWPFK
Sbjct:   73 AKNSGTFYVPPAAKVAFVIRIRGINGVSPKPRKVLKLLRLLQLNNGVFVKLNKASINMLKLVEPYVAYGFPNLKSIKELIYKRGHLKIDGQRIPLTSNDMVEKQLGKFGIICVEDIIHEITTCGKHFKQVNNSLWPFK 210          

HSP 2 Score: 25.409 bits (54), Expect = 2.659e-49
Identity = 9/23 (39.13%), Postives = 15/23 (65.22%), Query Frame = 2
Query:  206 YNRTKQYAKEYDEEQKELIRLKR 274
            + R ++Y  EY + ++E IRL R
Sbjct:   49 FKRAEKYVSEYHKTEREAIRLNR 71          
BLAST of CF831992 vs. ExPASy Swiss-Prot
Match: RL7_DROME (60S ribosomal protein L7 OS=Drosophila melanogaster GN=RpL7 PE=2 SV=2)

HSP 1 Score: 193.356 bits (490), Expect = 9.951e-49
Identity = 93/139 (66.91%), Postives = 114/139 (82.01%), Query Frame = 3
Query:  279 AKLKGGFYVNPEAKLLFIIRIRGINAVDPKTKKILQLLRLRQIFNGVFLKVNKATLNMLHRVEPYVTYGYPNLKSVKELIYKRGYGKLNKQRIALTDNSIIEQALGQ-HGIICMEDLIHEILTVGPHFKEANNFLWPFK 692
            AK +  FYV  EAKL F++RIRGIN V PK +K+LQL RLRQI NGVF+K+NKAT+NML   EPY+T+GYPNLKSV+ELIYKRG+ K N+QR+ +TDN +IE+ L Q H I C+EDL+HEI TVGP+FK A+NFLWPFK
Sbjct:   78 AKKRNQFYVPAEAKLAFVVRIRGINKVAPKVRKVLQLFRLRQINNGVFIKLNKATINMLRIAEPYITWGYPNLKSVRELIYKRGFVKHNRQRVPITDNFVIERKLRQAHQIQCVEDLVHEIFTVGPNFKYASNFLWPFK 216          
BLAST of CF831992 vs. ExPASy Swiss-Prot
Match: RL7_CANGA (60S ribosomal protein L7 OS=Candida glabrata GN=RPL7 PE=3 SV=1)

HSP 1 Score: 193.356 bits (490), Expect = 9.951e-49
Identity = 86/139 (61.87%), Postives = 115/139 (82.73%), Query Frame = 3
Query:  276 EAKLKGGFYVNPEAKLLFIIRIRGINAVDPKTKKILQLLRLRQIFNGVFLKVNKATLNMLHRVEPYVTYGYPNLKSVKELIYKRGYGKLNKQRIALTDNSIIEQALGQHGIICMEDLIHEILTVGPHFKEANNFLWPFK 692
            EAK  G +YV  + KL+F++RI+GIN + PK +K+LQLLRL QI +G F+KV KAT  +L  +EPYV YGYP+  +V++L+YKRG+GK+NKQRIAL+DN+I+E  LG+ GI+ ++DLIHEI+TVGPHFK+ANNFLWPFK
Sbjct:   68 EAKASGSYYVEAQPKLVFVVRIKGINKIPPKPRKVLQLLRLTQINSGTFVKVTKATSELLKLIEPYVAYGYPSYSTVRQLVYKRGHGKINKQRIALSDNAIVEANLGKFGILSIDDLIHEIVTVGPHFKQANNFLWPFK 206          
BLAST of CF831992 vs. ExPASy Swiss-Prot
Match: RL7B_YEAST (60S ribosomal protein L7-B OS=Saccharomyces cerevisiae GN=RPL7B PE=1 SV=3)

HSP 1 Score: 191.815 bits (486), Expect = 2.895e-48
Identity = 83/139 (59.71%), Postives = 116/139 (83.45%), Query Frame = 3
Query:  276 EAKLKGGFYVNPEAKLLFIIRIRGINAVDPKTKKILQLLRLRQIFNGVFLKVNKATLNMLHRVEPYVTYGYPNLKSVKELIYKRGYGKLNKQRIALTDNSIIEQALGQHGIICMEDLIHEILTVGPHFKEANNFLWPFK 692
            +AK  G +YV  + KL+F++RI+GIN + PK +K+LQLLRL +I +G F+KV KATL +L  +EPYV YGYP+  ++++L+YKRG+GK+NKQR+ L+DN+IIE  LG++GI+ ++DLIHEI+TVGPHFK+ANNFLWPFK
Sbjct:   68 DAKAAGSYYVEAQHKLVFVVRIKGINKIPPKPRKVLQLLRLTRINSGTFVKVTKATLELLKLIEPYVAYGYPSYSTIRQLVYKRGFGKINKQRVPLSDNAIIEANLGKYGILSIDDLIHEIITVGPHFKQANNFLWPFK 206          
BLAST of CF831992 vs. ExPASy Swiss-Prot
Match: RL7A_YEAST (60S ribosomal protein L7-A OS=Saccharomyces cerevisiae GN=RPL7A PE=1 SV=3)

HSP 1 Score: 191.815 bits (486), Expect = 2.895e-48
Identity = 83/139 (59.71%), Postives = 116/139 (83.45%), Query Frame = 3
Query:  276 EAKLKGGFYVNPEAKLLFIIRIRGINAVDPKTKKILQLLRLRQIFNGVFLKVNKATLNMLHRVEPYVTYGYPNLKSVKELIYKRGYGKLNKQRIALTDNSIIEQALGQHGIICMEDLIHEILTVGPHFKEANNFLWPFK 692
            +AK  G +YV  + KL+F++RI+GIN + PK +K+LQLLRL +I +G F+KV KATL +L  +EPYV YGYP+  ++++L+YKRG+GK+NKQR+ L+DN+IIE  LG++GI+ ++DLIHEI+TVGPHFK+ANNFLWPFK
Sbjct:   68 DAKAAGSYYVEAQHKLVFVVRIKGINKIPPKPRKVLQLLRLTRINSGTFVKVTKATLELLKLIEPYVAYGYPSYSTIRQLVYKRGFGKINKQRVPLSDNAIIEANLGKYGILSIDDLIHEIITVGPHFKQANNFLWPFK 206          
The following BLAST results are available for this feature:
BLAST of CF831992 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 37
Match NameE-valueIdentityDescription
RL7_YARLI9.490e-5668.3560S ribosomal protein L7 OS=Yarrowia lipolytica GN... [more]
RL7_CHICK3.574e-5570.2960S ribosomal protein L7 OS=Gallus gallus GN=RPL7 ... [more]
RL7_CAEEL2.938e-5163.3160S ribosomal protein L7 OS=Caenorhabditis elegans... [more]
RL7_ASHGO1.063e-5064.7560S ribosomal protein L7 OS=Ashbya gossypii GN=RPL... [more]
RL7C_SCHPO9.000e-5066.9160S ribosomal protein L7-C OS=Schizosaccharomyces ... [more]
RL7_DICDI2.659e-4965.2260S ribosomal protein L7 OS=Dictyostelium discoide... [more]
RL7_DROME9.951e-4966.9160S ribosomal protein L7 OS=Drosophila melanogaste... [more]
RL7_CANGA9.951e-4961.8760S ribosomal protein L7 OS=Candida glabrata GN=RP... [more]
RL7B_YEAST2.895e-4859.7160S ribosomal protein L7-B OS=Saccharomyces cerevi... [more]
RL7A_YEAST2.895e-4859.7160S ribosomal protein L7-A OS=Saccharomyces cerevi... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_01C04_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01C04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF831992 ID=CF831992; Name=CF831992; organism=Citrus sinensis; type=EST; length=693bp
CGCGAAGCCAGACCTCTCTCCGTGAAAAGATAGATATAAAAGACCTCTAA
GAACAAATTGAACCAAAGAGATGGCTGAAGCAGCAGCTGTTGTGGTACCA
GAGTCAGTGTTGAAGAAGAAGAAGAGAGAGGAGGAATGGGCATTGGCCAA
GAAGCAGGAGCTGGAAGCCGCGAAAAAGAAGAAGGCTGAGACCCGGAAGC
TCATTTACAACAGAACCAAACAGTACGCTAAAGAGTACGATGAAGAGCAA
AAAGAACTCATTCGTTTGAAGCGTAGAGGCCAAGCTTAAGGGTGGATTTT
ATGTCAACCCAGAAGCTAAGCTTTTGTTCATTATCAGGATTCGCGGTATC
AATGCTGTTGATCCAAAGACCAAGAAAATTTTGCAGCTTCTCCGTTTGAG
ACAGATTTTTAATGGTGTCTTTTTGAAAGTGAACAAAGCCACACTCAATA
TGCTGCACAGAGTTGAGCCCTATGTAACATATGGGTACCCCAATTTAAAG
AGTGTCAAAGAACTGATTTACAAGAGGGGTTACGGCAAATTAAATAAGCA
GAGGATTGCTTTGACCGACAATTCTATCATCGAACAGGCTCTTGGGCAGC
ATGGAATTATCTGCATGGAAGATCTCATCCATGAGATTTTGACTGTTGGT
CCTCACTTCAAGGAGGCAAACAACTTCCTATGGCCCTTCAAGC
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