CF831992

Overview
NameCF831992
Unique NameCF831992
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length693
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CF831992_ssr112 microsatellite CF831992_ssr112:112..123. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig6180 contig Csv1_Contig6180:17..708. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF831992 vs. ExPASy Swiss-Prot
Match: RLP7_YEAST (Ribosome biogenesis protein RLP7 OS=Saccharomyces cerevisiae GN=RLP7 PE=1 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 2.232e-24
Identity = 63/132 (47.73%), Postives = 81/132 (61.36%), Query Frame = 3
Query:  321 LLFIIRIRGINAVDPKTK--KILQLLRLRQIFNGVFLKVNKATLNMLHRVEPYVTYGYPNLKSVKELIYKRGY------GKLNKQRIALTDNSIIEQALGQHGIICMEDLIHEILTVGPHFKEANNFLWPFK 692
            LLFI+R+RG  AV+   K  KIL LLRL +   GVF+K+ K    +L  + PYV  G P+L S++ LI KRG        +     I L DN+I+E+ LG HGIIC+ED+IHEI T+G  F   N FL PFK
Sbjct:  141 LLFIVRVRGPLAVNIPNKAFKILSLLRLVETNTGVFVKLTKNVYPLLKVIAPYVVIGKPSLSSIRSLIQKRGRIIYKGENEAEPHEIVLNDNNIVEEQLGDHGIICVEDIIHEIATMGESFSVCNFFLQPFK 272          
BLAST of CF831992 vs. ExPASy Swiss-Prot
Match: RLP7_CANGA (Ribosome biogenesis protein RLP7 OS=Candida glabrata GN=RLP7 PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.108e-23
Identity = 66/178 (37.08%), Postives = 103/178 (57.87%), Query Frame = 3
Query:  198 SSFTTEPNSTLKSTMKSKKNSFV*SVEAKLKGGFY-----VNPEAKLLFIIRIRGINA--VDPKTKKILQLLRLRQIFNGVFLKVNKATLNMLHRVEPYVTYGYPNLKSVKELIYKRG---YGKLNKQR---IALTDNSIIEQALGQHGIICMEDLIHEILTVGPHFKEANNFLWPFK 692
            S   +E N  LK T K +       ++   + GF       N E +LLF++R++G  A  +  K  +IL  LRL ++   VF+K+ + T ++L  + PYV  G P+LKS++ LI KR    Y + +++    I L DN+I+E+ LG  G+IC++D+IHEI T+G +F + N FL PFK
Sbjct:   90 SHLPSEKNFFLKVTEKPQSEETDDLIDEDEEDGFEREKVAYNGEEQLLFVLRVKGPVAASIPHKAYRILSTLRLEEVNTAVFIKLTETTFSLLKIIAPYVIVGKPSLKSIRSLIQKRSKIVYKREDEEEAKEIILNDNNIVEEKLGDCGVICIDDIIHEIATLGENFTKCNFFLQPFK 267          
BLAST of CF831992 vs. ExPASy Swiss-Prot
Match: RLP7_KLULA (Ribosome biogenesis protein RLP7 OS=Kluyveromyces lactis GN=RLP7 PE=3 SV=2)

HSP 1 Score: 107.457 bits (267), Expect = 7.181e-23
Identity = 58/135 (42.96%), Postives = 82/135 (60.74%), Query Frame = 3
Query:  312 EAKLLFIIRIRGINAVD--PKTKKILQLLRLRQIFNGVFLKVNKATLNMLHRVEPYVTYGYPNLKSVKELIYKRGYGKLNK------QRIALTDNSIIEQALGQHGIICMEDLIHEILTVGPHFKEANNFLWPFK 692
            E  LLF+IR++G  AV    K  K+L LLRL ++  GVF+K+ K    +L  V PY+  G P+L S++ LI KR      +      + I L DN+I+E+ LG  G+IC+ED+IHEI T+G +F +   FL PFK
Sbjct:  134 EPSLLFVIRVKGPTAVKIPAKAYKVLSLLRLVELNTGVFIKLTKDVYPLLKLVSPYIVIGQPSLASIRSLIQKRSRIMWQRPEDKEPKEIILNDNNIVEEKLGDEGVICIEDIIHEISTLGENFSKCTFFLLPFK 268          
BLAST of CF831992 vs. ExPASy Swiss-Prot
Match: RLP7_ASHGO (Ribosome biogenesis protein RLP7 OS=Ashbya gossypii GN=RLP7 PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.037e-21
Identity = 54/134 (40.30%), Postives = 80/134 (59.70%), Query Frame = 3
Query:  315 AKLLFIIRIRGINA--VDPKTKKILQLLRLRQIFNGVFLKVNKATLNMLHRVEPYVTYGYPNLKSVKELIYKRGY------GKLNKQRIALTDNSIIEQALGQHGIICMEDLIHEILTVGPHFKEANNFLWPFK 692
            A LLF++R+RG  A  +  K  ++L LLRL ++  GVF+++      +L  V PYV  G P+L S++ L+ KR        G+     + L DN ++E+ LG  G+IC+ED+IHEI T+G  F + N FL PFK
Sbjct:  110 ATLLFVVRVRGPAAAKIPRKAHRVLTLLRLAEVNTGVFVRLTAEVFPLLQVVAPYVVVGRPSLASIRALVQKRARVVHQRAGEAAPVEMVLNDNGVVEERLGDEGVICVEDIIHEIATMGEAFAKCNFFLLPFK 243          
BLAST of CF831992 vs. ExPASy Swiss-Prot
Match: RLP7_DEBHA (Ribosome biogenesis protein RLP7 OS=Debaryomyces hansenii GN=RLP7 PE=3 SV=2)

HSP 1 Score: 98.2117 bits (243), Expect = 4.357e-20
Identity = 58/137 (42.34%), Postives = 84/137 (61.31%), Query Frame = 3
Query:  315 AKLLFIIRI----RGINAVDPKTKKILQLLRLRQIFNGVFLKVNKATLNMLHRVEPYVTYGYPNLKSVKELIYKRGY-----GKLNKQRIA-LTDNSIIEQALGQH-GIICMEDLIHEILTVGPHFKEANNFLWPFK 692
            AKLLFIIRI    +G+  V  K +K+L LLRL +   GVF+K+  AT+ +L  + PY+  G P+L S+++L  KR        +  + RI  L +N ++E   G   G IC+EDLIHE+ T+G HFK  +N++ PFK
Sbjct:   92 AKLLFIIRIPDHTKGLK-VPSKARKVLHLLRLNRPNTGVFVKLTPATVPLLKLISPYIVAGKPSLNSIRKLFQKRACISVIDEETKEPRITKLDNNGVVEDKFGDDLGCICIEDLIHELATLGEHFKTVSNWILPFK 227          
BLAST of CF831992 vs. ExPASy Swiss-Prot
Match: RL7_ENCCU (60S ribosomal protein L7 OS=Encephalitozoon cuniculi GN=RPL7 PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 5.326e-18
Identity = 48/138 (34.78%), Postives = 83/138 (60.14%), Query Frame = 3
Query:  276 EAKLKGGFYVNPEAKLLFIIRIRGINAVDPKTKKILQLLRLRQIFNGVFLKVNKATLNMLHRVEPYVTYGYPNLKSVKELIYKRGYGKLNKQRIALTDNSIIEQALGQHGIICMEDLIHEILTVGPHFKEANNFLWPF 689
            ++ +K GFYV  EA+   +I IR      PK +K+L+L RL++I   V ++ NK+T  ML  ++ +V +G   ++ +++L+Y +G G+    R+ LT+  I +   G+  I C+E+L+H I      FK+ N+FL+PF
Sbjct:   66 KSSMKNGFYVPKEAEFFAVILIRSKCNCPPKVRKVLELFRLKRINTCVLVRNNKSTRKMLQIIKDHVAFGTIGMELLRKLVYTKGSGRNGHVRVKLTNEFIEDMFDGK--IRCIEELVHHIYNGTEMFKKVNSFLYPF 201          
BLAST of CF831992 vs. ExPASy Swiss-Prot
Match: RLP7_PICJA (Ribosome biogenesis protein RLP7 (Fragment) OS=Pichia jadinii GN=RLP7 PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 4.508e-17
Identity = 49/132 (37.12%), Postives = 79/132 (59.85%), Query Frame = 3
Query:  321 LLFIIRIRG-INAVDP-KTKKILQLLRLRQIFNGVFLKVNKATLNMLHRVEPYVTYGYPNLKSVKELIYKRGYGKLNK------QRIALTDNSIIEQALGQHGIICMEDLIHEILTVGPHFKEANNFLWPFK 692
            L  I+R  G + A  P K +K+LQLLRL +I +GVF+K+ +    +L  + PY     P+L++V++L+ KR    +        +++ L DN+++E+ LG  GIIC+ED+IHE   +   FK   +FL PF+
Sbjct:   32 LYLIVRTPGPVGAKIPSKVQKVLQLLRLNKINSGVFVKLTETVYPLLKLLSPYTVIXQPSLQTVRQLVQKRATVTVTHANDEEPRQVKLNDNNLVEEKLGDEGIICIEDIIHETSHLATTFKTVTHFLDPFE 163          
The following BLAST results are available for this feature:
BLAST of CF831992 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 37
Match NameE-valueIdentityDescription
RLP7_YEAST2.232e-2447.73Ribosome biogenesis protein RLP7 OS=Saccharomyces ... [more]
RLP7_CANGA1.108e-2337.08Ribosome biogenesis protein RLP7 OS=Candida glabra... [more]
RLP7_KLULA7.181e-2342.96Ribosome biogenesis protein RLP7 OS=Kluyveromyces ... [more]
RLP7_ASHGO1.037e-2140.30Ribosome biogenesis protein RLP7 OS=Ashbya gossypi... [more]
RLP7_DEBHA4.357e-2042.34Ribosome biogenesis protein RLP7 OS=Debaryomyces h... [more]
RL7_ENCCU5.326e-1834.7860S ribosomal protein L7 OS=Encephalitozoon cunicu... [more]
RLP7_PICJA4.508e-1737.12Ribosome biogenesis protein RLP7 (Fragment) OS=Pic... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_01C04_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01C04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF831992 ID=CF831992; Name=CF831992; organism=Citrus sinensis; type=EST; length=693bp
CGCGAAGCCAGACCTCTCTCCGTGAAAAGATAGATATAAAAGACCTCTAA
GAACAAATTGAACCAAAGAGATGGCTGAAGCAGCAGCTGTTGTGGTACCA
GAGTCAGTGTTGAAGAAGAAGAAGAGAGAGGAGGAATGGGCATTGGCCAA
GAAGCAGGAGCTGGAAGCCGCGAAAAAGAAGAAGGCTGAGACCCGGAAGC
TCATTTACAACAGAACCAAACAGTACGCTAAAGAGTACGATGAAGAGCAA
AAAGAACTCATTCGTTTGAAGCGTAGAGGCCAAGCTTAAGGGTGGATTTT
ATGTCAACCCAGAAGCTAAGCTTTTGTTCATTATCAGGATTCGCGGTATC
AATGCTGTTGATCCAAAGACCAAGAAAATTTTGCAGCTTCTCCGTTTGAG
ACAGATTTTTAATGGTGTCTTTTTGAAAGTGAACAAAGCCACACTCAATA
TGCTGCACAGAGTTGAGCCCTATGTAACATATGGGTACCCCAATTTAAAG
AGTGTCAAAGAACTGATTTACAAGAGGGGTTACGGCAAATTAAATAAGCA
GAGGATTGCTTTGACCGACAATTCTATCATCGAACAGGCTCTTGGGCAGC
ATGGAATTATCTGCATGGAAGATCTCATCCATGAGATTTTGACTGTTGGT
CCTCACTTCAAGGAGGCAAACAACTTCCTATGGCCCTTCAAGC
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