CF831999

Overview
NameCF831999
Unique NameCF831999
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length689
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF831999 vs. ExPASy Swiss-Prot
Match: RL19_SULSY (50S ribosomal protein L19 OS=Sulfurihydrogenibium sp. (strain YO3AOP1) GN=rplS PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.139e-12
Identity = 37/88 (42.05%), Postives = 59/88 (67.05%), Query Frame = -1
Query:  423 REIPDIKPGYIVQLKVVIPEN-KRRVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLRD 683
            ++IP+ K G  V+L + + E  K R    +G+VI  R +G   TF +R++  GVG+E +FP+  P+I +I+V+ + KVRRAKLYY+R+
Sbjct:   15 QDIPEFKVGDTVRLHLKVKEGEKERTQIFEGLVIRVRGSGTGKTFTVRKVSYGVGMERIFPIACPSIQKIEVVKRGKVRRAKLYYIRN 102          
BLAST of CF831999 vs. ExPASy Swiss-Prot
Match: RL19_STRU0 (50S ribosomal protein L19 OS=Streptococcus uberis (strain ATCC BAA-854 / 0140J) GN=rplS PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.139e-12
Identity = 35/86 (40.70%), Postives = 58/86 (67.44%), Query Frame = -1
Query:  426 EIPDIKPGYIVQLKVVIPENKR-RVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLR 680
            +IP+ + G  V++   + E  R R+   +G+VI+R+  GIS  + +R++  G+GVE  FP+++P + +I+V+   KVRRAKLYYLR
Sbjct:   16 DIPEFRAGDTVRVHAKVVEGTRERIQIFEGVVISRKGQGISEMYTVRKISGGIGVERTFPIHTPRVDKIEVVRYGKVRRAKLYYLR 101          
BLAST of CF831999 vs. ExPASy Swiss-Prot
Match: RL19_STRA5 (50S ribosomal protein L19 OS=Streptococcus agalactiae serotype V GN=rplS PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.139e-12
Identity = 35/86 (40.70%), Postives = 58/86 (67.44%), Query Frame = -1
Query:  426 EIPDIKPGYIVQLKVVIPENKR-RVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLR 680
            +IP+ + G  V++   + E  R R+   +G+VI+R+  GIS  + +R++  G+GVE  FP+++P + +I+V+   KVRRAKLYYLR
Sbjct:   16 DIPEFRAGDTVRVHAKVVEGTRERIQIFEGVVISRKGQGISEMYTVRKISGGIGVERTFPIHTPRVDKIEVVRYGKVRRAKLYYLR 101          
BLAST of CF831999 vs. ExPASy Swiss-Prot
Match: RL19_STRA3 (50S ribosomal protein L19 OS=Streptococcus agalactiae serotype III GN=rplS PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.139e-12
Identity = 35/86 (40.70%), Postives = 58/86 (67.44%), Query Frame = -1
Query:  426 EIPDIKPGYIVQLKVVIPENKR-RVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLR 680
            +IP+ + G  V++   + E  R R+   +G+VI+R+  GIS  + +R++  G+GVE  FP+++P + +I+V+   KVRRAKLYYLR
Sbjct:   16 DIPEFRAGDTVRVHAKVVEGTRERIQIFEGVVISRKGQGISEMYTVRKISGGIGVERTFPIHTPRVDKIEVVRYGKVRRAKLYYLR 101          
BLAST of CF831999 vs. ExPASy Swiss-Prot
Match: RL19_STRA1 (50S ribosomal protein L19 OS=Streptococcus agalactiae serotype Ia GN=rplS PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.139e-12
Identity = 35/86 (40.70%), Postives = 58/86 (67.44%), Query Frame = -1
Query:  426 EIPDIKPGYIVQLKVVIPENKR-RVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLR 680
            +IP+ + G  V++   + E  R R+   +G+VI+R+  GIS  + +R++  G+GVE  FP+++P + +I+V+   KVRRAKLYYLR
Sbjct:   16 DIPEFRAGDTVRVHAKVVEGTRERIQIFEGVVISRKGQGISEMYTVRKISGGIGVERTFPIHTPRVDKIEVVRYGKVRRAKLYYLR 101          
BLAST of CF831999 vs. ExPASy Swiss-Prot
Match: RL19_RHOSK (50S ribosomal protein L19 OS=Rhodobacter sphaeroides (strain KD131 / KCTC 12085) GN=rplS PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.139e-12
Identity = 41/90 (45.56%), Postives = 58/90 (64.44%), Query Frame = -1
Query:  420 REIPDIKPGYIVQLKVVIPENKR-RVSTLKGIVIARRNAG-ISTTFRLRRLVAGVGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLRDK 683
            + IPD K G  V++   + E  R RV   +G+VI R+    IS +F +R++  G GVE +FPLYS NI  I+V+ + +VRRAKLYYLR +
Sbjct:   17 KTIPDFKAGDTVRVGYKVTEGTRSRVQNYEGVVIGRKGGNTISASFTVRKISFGEGVERVFPLYSTNIDSIEVVRRGRVRRAKLYYLRSR 106          
BLAST of CF831999 vs. ExPASy Swiss-Prot
Match: RL19_RHOS5 (50S ribosomal protein L19 OS=Rhodobacter sphaeroides (strain ATCC 17025 / ATH 2.4.3) GN=rplS PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.139e-12
Identity = 41/90 (45.56%), Postives = 58/90 (64.44%), Query Frame = -1
Query:  420 REIPDIKPGYIVQLKVVIPENKR-RVSTLKGIVIARRNAG-ISTTFRLRRLVAGVGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLRDK 683
            + IPD K G  V++   + E  R RV   +G+VI R+    IS +F +R++  G GVE +FPLYS NI  I+V+ + +VRRAKLYYLR +
Sbjct:   17 KTIPDFKAGDTVRVGYKVTEGTRSRVQNYEGVVIGRKGGNTISASFTVRKISFGEGVERVFPLYSTNIDSIEVVRRGRVRRAKLYYLRSR 106          
BLAST of CF831999 vs. ExPASy Swiss-Prot
Match: RL19_RHOS4 (50S ribosomal protein L19 OS=Rhodobacter sphaeroides (strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM 158) GN=rplS PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.139e-12
Identity = 41/90 (45.56%), Postives = 58/90 (64.44%), Query Frame = -1
Query:  420 REIPDIKPGYIVQLKVVIPENKR-RVSTLKGIVIARRNAG-ISTTFRLRRLVAGVGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLRDK 683
            + IPD K G  V++   + E  R RV   +G+VI R+    IS +F +R++  G GVE +FPLYS NI  I+V+ + +VRRAKLYYLR +
Sbjct:   17 KTIPDFKAGDTVRVGYKVTEGTRSRVQNYEGVVIGRKGGNTISASFTVRKISFGEGVERVFPLYSTNIDSIEVVRRGRVRRAKLYYLRSR 106          
BLAST of CF831999 vs. ExPASy Swiss-Prot
Match: RL19_RHOS1 (50S ribosomal protein L19 OS=Rhodobacter sphaeroides (strain ATCC 17029 / ATH 2.4.9) GN=rplS PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.139e-12
Identity = 41/90 (45.56%), Postives = 58/90 (64.44%), Query Frame = -1
Query:  420 REIPDIKPGYIVQLKVVIPENKR-RVSTLKGIVIARRNAG-ISTTFRLRRLVAGVGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLRDK 683
            + IPD K G  V++   + E  R RV   +G+VI R+    IS +F +R++  G GVE +FPLYS NI  I+V+ + +VRRAKLYYLR +
Sbjct:   17 KTIPDFKAGDTVRVGYKVTEGTRSRVQNYEGVVIGRKGGNTISASFTVRKISFGEGVERVFPLYSTNIDSIEVVRRGRVRRAKLYYLRSR 106          
BLAST of CF831999 vs. ExPASy Swiss-Prot
Match: RL19_RENSM (50S ribosomal protein L19 OS=Renibacterium salmoninarum (strain ATCC 33209 / DSM 20767 / IFO 15589) GN=rplS PE=3 SV=2)

HSP 1 Score: 73.559 bits (179), Expect = 1.139e-12
Identity = 36/87 (41.38%), Postives = 59/87 (67.82%), Query Frame = -1
Query:  423 EIPDIKPGYIVQLKV-VIPENKRRVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLRD 680
            ++P+ + G  +++ V +I  N+ RV   +G V+ R+  G+  TF +R++  GVGVE  FP++SP I +I+V+ +  VRRAKLYY+RD
Sbjct:   15 DVPEFRAGDNLKVHVNIIEGNRSRVQVFQGFVLGRQGDGVRETFTVRKVSFGVGVERTFPVHSPIIEKIEVVTRGDVRRAKLYYMRD 101          
The following BLAST results are available for this feature:
BLAST of CF831999 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL19_SULSY1.139e-1242.0550S ribosomal protein L19 OS=Sulfurihydrogenibium ... [more]
RL19_STRU01.139e-1240.7050S ribosomal protein L19 OS=Streptococcus uberis ... [more]
RL19_STRA51.139e-1240.7050S ribosomal protein L19 OS=Streptococcus agalact... [more]
RL19_STRA31.139e-1240.7050S ribosomal protein L19 OS=Streptococcus agalact... [more]
RL19_STRA11.139e-1240.7050S ribosomal protein L19 OS=Streptococcus agalact... [more]
RL19_RHOSK1.139e-1245.5650S ribosomal protein L19 OS=Rhodobacter sphaeroid... [more]
RL19_RHOS51.139e-1245.5650S ribosomal protein L19 OS=Rhodobacter sphaeroid... [more]
RL19_RHOS41.139e-1245.5650S ribosomal protein L19 OS=Rhodobacter sphaeroid... [more]
RL19_RHOS11.139e-1245.5650S ribosomal protein L19 OS=Rhodobacter sphaeroid... [more]
RL19_RENSM1.139e-1241.3850S ribosomal protein L19 OS=Renibacterium salmoni... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_01C09_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01C09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF831999 ID=CF831999; Name=CF831999; organism=Citrus sinensis; type=EST; length=689bp
TTTTAAACAGACCCATTACCTTCATCTCCATATTATTAACCGAGTACATG
CAGCCTTACGCGTATTGATGGAAGAAATGAGCTGTCTCTGGCGCAATGCC
CATGTTCAAATGCATGATCTATAATTACAAAACAAGACCTTTTATGGGTA
ACATTAATGAAGCCAAAATTTTACCACTTCTAGCGGCTTTCTGGGGATTC
CATTCAAGTTTGGAACTCCTTGCCCCTCCCAACCATGCCAGCACAGCAAT
TAACAGAGATGCTAAACTAAACCTTAATTGGAAAAAGAAAGGGTAAAATG
AAAACACAAATAGTTTGTGAAATTTGTCACCAATGCAATACAACCCAACT
ATCCATCACAAGGAACTCACAGAATCCTCCCACCAATAAAGCTTCTTATT
TATTTCTAAGTGGATTCAGCTTATCCCTCAGATAGTAAAGCTTGGCCCTC
CTCACTTTCTTCTTGTCCAGCACCTTTATTTCTAGTATATTAGGTGAGTA
CAAAGGGAAAAGAGATTCGACTCCAACCCCTGCNACCAGCCTCCTCAATC
TAAATGTAGTACTTATACCAGCATTACGCCTTGCTATAACAATACCCTTT
AAAGTTGAAACACGTCTCTTGTTCTCTGGAATTACCACTTTTAGTTGCAC
GATATAACCAGGCTTTATATCGGGGATCTCCCTCTGTGA
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