CF831999

Overview
NameCF831999
Unique NameCF831999
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length689
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig11031 contig Csv1_Contig11031:462..1150. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF831999 vs. ExPASy Swiss-Prot
Match: RL19_BACC1 (50S ribosomal protein L19 OS=Bacillus cereus (strain ATCC 10987) GN=rplS PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.101e-15
Identity = 41/87 (47.13%), Postives = 61/87 (70.11%), Query Frame = -1
Query:  423 EIPDIKPGYIVQLKVVIPENKR-RVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLRD 680
            ++P  +PG  +++ V + E  R R+   +G+VI RR  GIS TF +R++  GVGVE  FP+++P I +I+VL + KVRRAKLYYLR+
Sbjct:   16 DLPSFRPGDTLRVHVKVVEGTRERIQLFEGVVIKRRGGGISETFTVRKISYGVGVERTFPVHTPRIAKIEVLRRGKVRRAKLYYLRN 102          
BLAST of CF831999 vs. ExPASy Swiss-Prot
Match: RL19_BACC0 (50S ribosomal protein L19 OS=Bacillus cereus (strain AH820) GN=rplS PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.101e-15
Identity = 41/87 (47.13%), Postives = 61/87 (70.11%), Query Frame = -1
Query:  423 EIPDIKPGYIVQLKVVIPENKR-RVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLRD 680
            ++P  +PG  +++ V + E  R R+   +G+VI RR  GIS TF +R++  GVGVE  FP+++P I +I+VL + KVRRAKLYYLR+
Sbjct:   16 DLPSFRPGDTLRVHVKVVEGTRERIQLFEGVVIKRRGGGISETFTVRKISYGVGVERTFPVHTPRIAKIEVLRRGKVRRAKLYYLRN 102          
BLAST of CF831999 vs. ExPASy Swiss-Prot
Match: RL19_BACAN (50S ribosomal protein L19 OS=Bacillus anthracis GN=rplS PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.101e-15
Identity = 41/87 (47.13%), Postives = 61/87 (70.11%), Query Frame = -1
Query:  423 EIPDIKPGYIVQLKVVIPENKR-RVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLRD 680
            ++P  +PG  +++ V + E  R R+   +G+VI RR  GIS TF +R++  GVGVE  FP+++P I +I+VL + KVRRAKLYYLR+
Sbjct:   16 DLPSFRPGDTLRVHVKVVEGTRERIQLFEGVVIKRRGGGISETFTVRKISYGVGVERTFPVHTPRIAKIEVLRRGKVRRAKLYYLRN 102          
BLAST of CF831999 vs. ExPASy Swiss-Prot
Match: RL19_BACAH (50S ribosomal protein L19 OS=Bacillus thuringiensis (strain Al Hakam) GN=rplS PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.101e-15
Identity = 41/87 (47.13%), Postives = 61/87 (70.11%), Query Frame = -1
Query:  423 EIPDIKPGYIVQLKVVIPENKR-RVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLRD 680
            ++P  +PG  +++ V + E  R R+   +G+VI RR  GIS TF +R++  GVGVE  FP+++P I +I+VL + KVRRAKLYYLR+
Sbjct:   16 DLPSFRPGDTLRVHVKVVEGTRERIQLFEGVVIKRRGGGISETFTVRKISYGVGVERTFPVHTPRIAKIEVLRRGKVRRAKLYYLRN 102          
BLAST of CF831999 vs. ExPASy Swiss-Prot
Match: RL19_BACAC (50S ribosomal protein L19 OS=Bacillus anthracis (strain CDC 684 / NRRL 3495) GN=rplS PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.101e-15
Identity = 41/87 (47.13%), Postives = 61/87 (70.11%), Query Frame = -1
Query:  423 EIPDIKPGYIVQLKVVIPENKR-RVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLRD 680
            ++P  +PG  +++ V + E  R R+   +G+VI RR  GIS TF +R++  GVGVE  FP+++P I +I+VL + KVRRAKLYYLR+
Sbjct:   16 DLPSFRPGDTLRVHVKVVEGTRERIQLFEGVVIKRRGGGISETFTVRKISYGVGVERTFPVHTPRIAKIEVLRRGKVRRAKLYYLRN 102          
BLAST of CF831999 vs. ExPASy Swiss-Prot
Match: RL19_BACAA (50S ribosomal protein L19 OS=Bacillus anthracis (strain A0248) GN=rplS PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.101e-15
Identity = 41/87 (47.13%), Postives = 61/87 (70.11%), Query Frame = -1
Query:  423 EIPDIKPGYIVQLKVVIPENKR-RVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLRD 680
            ++P  +PG  +++ V + E  R R+   +G+VI RR  GIS TF +R++  GVGVE  FP+++P I +I+VL + KVRRAKLYYLR+
Sbjct:   16 DLPSFRPGDTLRVHVKVVEGTRERIQLFEGVVIKRRGGGISETFTVRKISYGVGVERTFPVHTPRIAKIEVLRRGKVRRAKLYYLRN 102          
BLAST of CF831999 vs. ExPASy Swiss-Prot
Match: RL19_XANP2 (50S ribosomal protein L19 OS=Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2) GN=rplS PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.438e-15
Identity = 42/90 (46.67%), Postives = 62/90 (68.89%), Query Frame = -1
Query:  420 QREIPDIKPGYIVQLKVVIPENKR-RVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLRDK 686
            +R IPD +PG  + + V + E +R RV   +G+ IAR   G++ +F +R++  G GVE +FP+Y+P I  IKV+ + KVRRAKLYYLRD+
Sbjct:   18 KRAIPDFQPGDTIIVNVKVVEGERSRVQAYEGVCIARSGGGLNESFTVRKISYGEGVERVFPVYAPLIDSIKVVRRGKVRRAKLYYLRDR 107          
BLAST of CF831999 vs. ExPASy Swiss-Prot
Match: RL19_SYMTH (50S ribosomal protein L19 OS=Symbiobacterium thermophilum GN=rplS PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.438e-15
Identity = 40/88 (45.45%), Postives = 62/88 (70.45%), Query Frame = -1
Query:  420 EIPDIKPGYIVQLKVVIPE-NKRRVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLRDK 680
            +IP  +PG  V++ V + E N+ R+   +G+VI R+ +GI+ TF +RR+  GVGVE  FP++SP +  I+V+ +  VRRAKLYYLR++
Sbjct:   16 DIPAFRPGDTVRVNVKVVEGNRERIQAFEGVVIKRQGSGINETFTVRRVSYGVGVERTFPVHSPRLASIEVIRRGVVRRAKLYYLRER 103          
BLAST of CF831999 vs. ExPASy Swiss-Prot
Match: RL19_STAS1 (50S ribosomal protein L19 OS=Staphylococcus saprophyticus subsp. saprophyticus (strain ATCC 15305 / DSM 20229) GN=rplS PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.438e-15
Identity = 42/87 (48.28%), Postives = 61/87 (70.11%), Query Frame = -1
Query:  423 EIPDIKPGYIVQLKVVIPENKR-RVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLRD 680
            ++P  +PG  +++ V I E  R R+   +G+VI RR  GIS TF +R++ +GVGVE  FPL++P I +I+V  + KVRRAKLYYLR+
Sbjct:   18 DLPSFRPGDTLKVHVRIIEGTRERIQVFEGVVIKRRGGGISETFTVRKISSGVGVERTFPLHTPKIEKIEVSRRGKVRRAKLYYLRE 104          
BLAST of CF831999 vs. ExPASy Swiss-Prot
Match: RL19_MYCS2 (50S ribosomal protein L19 OS=Mycobacterium smegmatis GN=rplS PE=1 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.438e-15
Identity = 45/87 (51.72%), Postives = 57/87 (65.52%), Query Frame = -1
Query:  423 EIPDIKPGYIVQLKV-VIPENKRRVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLRD 680
            +IP   PG  V + V VI  +K R+   KG+VI R+  GIS TF +R+   GVGVE  FP++SPNI  I VL +  VRRAKLYYLR+
Sbjct:   15 DIPTFSPGDTVNVHVKVIEGSKERIQVFKGVVIRRQGGGISETFTVRKESYGVGVERTFPVHSPNIDHIDVLTRGDVRRAKLYYLRE 101          
The following BLAST results are available for this feature:
BLAST of CF831999 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL19_BACC11.101e-1547.1350S ribosomal protein L19 OS=Bacillus cereus (stra... [more]
RL19_BACC01.101e-1547.1350S ribosomal protein L19 OS=Bacillus cereus (stra... [more]
RL19_BACAN1.101e-1547.1350S ribosomal protein L19 OS=Bacillus anthracis GN... [more]
RL19_BACAH1.101e-1547.1350S ribosomal protein L19 OS=Bacillus thuringiensi... [more]
RL19_BACAC1.101e-1547.1350S ribosomal protein L19 OS=Bacillus anthracis (s... [more]
RL19_BACAA1.101e-1547.1350S ribosomal protein L19 OS=Bacillus anthracis (s... [more]
RL19_XANP21.438e-1546.6750S ribosomal protein L19 OS=Xanthobacter autotrop... [more]
RL19_SYMTH1.438e-1545.4550S ribosomal protein L19 OS=Symbiobacterium therm... [more]
RL19_STAS11.438e-1548.2850S ribosomal protein L19 OS=Staphylococcus saprop... [more]
RL19_MYCS21.438e-1551.7250S ribosomal protein L19 OS=Mycobacterium smegmat... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_01C09_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01C09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF831999 ID=CF831999; Name=CF831999; organism=Citrus sinensis; type=EST; length=689bp
TTTTAAACAGACCCATTACCTTCATCTCCATATTATTAACCGAGTACATG
CAGCCTTACGCGTATTGATGGAAGAAATGAGCTGTCTCTGGCGCAATGCC
CATGTTCAAATGCATGATCTATAATTACAAAACAAGACCTTTTATGGGTA
ACATTAATGAAGCCAAAATTTTACCACTTCTAGCGGCTTTCTGGGGATTC
CATTCAAGTTTGGAACTCCTTGCCCCTCCCAACCATGCCAGCACAGCAAT
TAACAGAGATGCTAAACTAAACCTTAATTGGAAAAAGAAAGGGTAAAATG
AAAACACAAATAGTTTGTGAAATTTGTCACCAATGCAATACAACCCAACT
ATCCATCACAAGGAACTCACAGAATCCTCCCACCAATAAAGCTTCTTATT
TATTTCTAAGTGGATTCAGCTTATCCCTCAGATAGTAAAGCTTGGCCCTC
CTCACTTTCTTCTTGTCCAGCACCTTTATTTCTAGTATATTAGGTGAGTA
CAAAGGGAAAAGAGATTCGACTCCAACCCCTGCNACCAGCCTCCTCAATC
TAAATGTAGTACTTATACCAGCATTACGCCTTGCTATAACAATACCCTTT
AAAGTTGAAACACGTCTCTTGTTCTCTGGAATTACCACTTTTAGTTGCAC
GATATAACCAGGCTTTATATCGGGGATCTCCCTCTGTGA
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