CF831999

Overview
NameCF831999
Unique NameCF831999
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length689
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig11031 contig Csv1_Contig11031:462..1150. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF831999 vs. ExPASy Swiss-Prot
Match: RL19_METSB (50S ribosomal protein L19 OS=Methylocella silvestris (strain BL2 / DSM 15510 / NCIMB 13906) GN=rplS PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.438e-15
Identity = 42/89 (47.19%), Postives = 61/89 (68.54%), Query Frame = -1
Query:  420 REIPDIKPGYIVQLKVVIPENKR-RVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLRDK 683
            + IP+ +PG  V + V + E +R RV   +G+ IAR   G++ +F +R++  G GVE +F +YSPNI  IKV+ + KVRRAKLYYLRD+
Sbjct:   19 KTIPEFQPGDTVIVNVKVKEGERTRVQAYEGVCIARNGGGLNESFTVRKISYGEGVERVFAIYSPNIDSIKVVRRGKVRRAKLYYLRDR 107          
BLAST of CF831999 vs. ExPASy Swiss-Prot
Match: RL19_METNO (50S ribosomal protein L19 OS=Methylobacterium nodulans (strain ORS2060 / LMG 21967) GN=rplS PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.438e-15
Identity = 43/89 (48.31%), Postives = 59/89 (66.29%), Query Frame = -1
Query:  420 REIPDIKPGYIVQLKVVIPENKR-RVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLRDK 683
            + IPD +PG  V + V + E  R RV   +G+ IAR   G++  F +R++  G GVE +FP+YSP I  IKV+ + KVRRAKLYYLRD+
Sbjct:   17 KTIPDFEPGDTVVVNVKVKEGDRTRVQAYEGVCIARAGGGLNENFTVRKISYGEGVERVFPIYSPLIDSIKVVRRGKVRRAKLYYLRDR 105          
BLAST of CF831999 vs. ExPASy Swiss-Prot
Match: RL19_GEOSF (50S ribosomal protein L19 OS=Geobacter sp. (strain FRC-32) GN=rplS PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.438e-15
Identity = 42/88 (47.73%), Postives = 63/88 (71.59%), Query Frame = -1
Query:  426 QREIPDIKPGYIVQLKVVIPE-NKRRVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLR 686
            ++ IP  +PG  V+++V I E +K R+   +G+VI R+N GI  +F +R++  GVGVE  FPL+SP+I  I+V+ + +VRRAKLYYLR
Sbjct:   13 KKNIPGFRPGDTVKVQVKIVEGDKSRIQAFQGVVIGRQNGGIRESFTVRKISNGVGVERSFPLHSPSIDAIEVITRGQVRRAKLYYLR 100          
BLAST of CF831999 vs. ExPASy Swiss-Prot
Match: RL19_CORDI (50S ribosomal protein L19 OS=Corynebacterium diphtheriae GN=rplS PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.438e-15
Identity = 41/87 (47.13%), Postives = 61/87 (70.11%), Query Frame = -1
Query:  423 EIPDIKPGYIVQLKV-VIPENKRRVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLRD 680
            +IP  +PG  + + V VI  +K R+   KG+VI R+ AG+  TF +R++  G+GVE  FP+++PNI +I+V+ +  VRRAKLYYLRD
Sbjct:   15 DIPAFRPGDTLNVHVKVIEGSKSRIQVFKGVVIRRQGAGVRETFTIRKVSFGIGVERTFPVHTPNIDKIEVVTRGDVRRAKLYYLRD 101          
BLAST of CF831999 vs. ExPASy Swiss-Prot
Match: RL19_BIFAA (50S ribosomal protein L19 OS=Bifidobacterium adolescentis (strain ATCC 15703 / DSM 20083) GN=rplS PE=3 SV=2)

HSP 1 Score: 83.1889 bits (204), Expect = 1.438e-15
Identity = 44/87 (50.57%), Postives = 58/87 (66.67%), Query Frame = -1
Query:  423 EIPDIKPGYIVQLKVVIPE-NKRRVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLRD 680
            EIP  +PG  V++ V I E N  R+    G+VIAR+  G+  TF +R++  G GVE  FPL+SP I  IKV+ K +VRRAKLYYLR+
Sbjct:   18 EIPAFRPGDTVEVNVKIKEGNNSRIQAFTGVVIARQGGGVRETFVVRKISFGTGVERRFPLHSPAIDSIKVVRKGRVRRAKLYYLRN 104          
BLAST of CF831999 vs. ExPASy Swiss-Prot
Match: RL19_BACWK (50S ribosomal protein L19 OS=Bacillus weihenstephanensis (strain KBAB4) GN=rplS PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.438e-15
Identity = 41/87 (47.13%), Postives = 60/87 (68.97%), Query Frame = -1
Query:  423 EIPDIKPGYIVQLKVVIPENKR-RVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLRD 680
            ++P  +PG  +++ V + E  R R+   +G+VI RR  GIS TF +R++  GVGVE  FP+++P I  I+VL + KVRRAKLYYLR+
Sbjct:   16 DLPSFRPGDTLRVHVKVVEGTRERIQLFEGVVIKRRGGGISETFTVRKISYGVGVERTFPVHTPRIANIEVLRRGKVRRAKLYYLRN 102          
BLAST of CF831999 vs. ExPASy Swiss-Prot
Match: RL19_ANAVT (50S ribosomal protein L19 OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=rplS PE=3 SV=2)

HSP 1 Score: 83.1889 bits (204), Expect = 1.438e-15
Identity = 47/88 (53.41%), Postives = 62/88 (70.45%), Query Frame = -1
Query:  417 IPDIKPGYIVQLKVVIPE-NKRRVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLRDKL 677
            +P+I  G  V++ V I E +K RV   +G+VIARRN GI+ T  +RR+  GVGVE +F L+SP I  IKVL + KVRRAKLYYLR ++
Sbjct:   19 LPEIYIGDTVRVGVKIKEGDKYRVQPYEGVVIARRNGGINETITVRRVFQGVGVERVFLLHSPRIDNIKVLRRGKVRRAKLYYLRGRV 106          
BLAST of CF831999 vs. ExPASy Swiss-Prot
Match: RL19_RHOE4 (50S ribosomal protein L19 OS=Rhodococcus erythropolis (strain PR4 / NBRC 100887) GN=rplS PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.878e-15
Identity = 41/87 (47.13%), Postives = 59/87 (67.82%), Query Frame = -1
Query:  423 EIPDIKPGYIVQLKV-VIPENKRRVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLRD 680
            +IP+ +PG  + + V VI  +K RV   KG+VI R+  G+  TF +R++  GVGVE  FP++SP +  I+VL +  VRRAKLYYLR+
Sbjct:   15 DIPEFRPGDTLNVNVKVIEGSKERVQVFKGVVIRRQGGGVRETFTVRKVSFGVGVERTFPVHSPTLASIEVLTRGDVRRAKLYYLRE 101          
BLAST of CF831999 vs. ExPASy Swiss-Prot
Match: RL19_NOVAD (50S ribosomal protein L19 OS=Novosphingobium aromaticivorans (strain DSM 12444) GN=rplS PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.878e-15
Identity = 43/91 (47.25%), Postives = 62/91 (68.13%), Query Frame = -1
Query:  420 SQREIPDIKPGYIVQLKVVIPENKR-RVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLRDK 689
            +++EIPD + G  V++ V + E +R RV   +G+ IAR N G+ + F +R++  G GVE +FPLYSPNI  I V+ +  VRRAKLYYLR +
Sbjct:   17 AKKEIPDFRAGDTVRVGVRVVEGERTRVQAYEGVCIARSNRGLGSNFTVRKISFGEGVERVFPLYSPNIDSITVVRRGVVRRAKLYYLRGR 107          
BLAST of CF831999 vs. ExPASy Swiss-Prot
Match: RL19_MESSB (50S ribosomal protein L19 OS=Mesorhizobium sp. (strain BNC1) GN=rplS PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.878e-15
Identity = 39/91 (42.86%), Postives = 63/91 (69.23%), Query Frame = -1
Query:  420 SQREIPDIKPGYIVQLKVVIPE-NKRRVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLRDK 689
            ++R +PD  PG  ++++V + E N+ RV   +G+ IAR  +G+   F +R++  G GVE +FP+YSP +  ++V+ + KVRRAKLYYLRD+
Sbjct:   17 AKRTLPDFSPGDTLRVQVRVTEGNRTRVQAFEGVCIARSGSGLQENFTVRKISYGEGVERVFPVYSPLVEAVEVVRRGKVRRAKLYYLRDR 107          
The following BLAST results are available for this feature:
BLAST of CF831999 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL19_METSB1.438e-1547.1950S ribosomal protein L19 OS=Methylocella silvestr... [more]
RL19_METNO1.438e-1548.3150S ribosomal protein L19 OS=Methylobacterium nodu... [more]
RL19_GEOSF1.438e-1547.7350S ribosomal protein L19 OS=Geobacter sp. (strain... [more]
RL19_CORDI1.438e-1547.1350S ribosomal protein L19 OS=Corynebacterium dipht... [more]
RL19_BIFAA1.438e-1550.5750S ribosomal protein L19 OS=Bifidobacterium adole... [more]
RL19_BACWK1.438e-1547.1350S ribosomal protein L19 OS=Bacillus weihenstepha... [more]
RL19_ANAVT1.438e-1553.4150S ribosomal protein L19 OS=Anabaena variabilis (... [more]
RL19_RHOE41.878e-1547.1350S ribosomal protein L19 OS=Rhodococcus erythropo... [more]
RL19_NOVAD1.878e-1547.2550S ribosomal protein L19 OS=Novosphingobium aroma... [more]
RL19_MESSB1.878e-1542.8650S ribosomal protein L19 OS=Mesorhizobium sp. (st... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_01C09_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01C09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF831999 ID=CF831999; Name=CF831999; organism=Citrus sinensis; type=EST; length=689bp
TTTTAAACAGACCCATTACCTTCATCTCCATATTATTAACCGAGTACATG
CAGCCTTACGCGTATTGATGGAAGAAATGAGCTGTCTCTGGCGCAATGCC
CATGTTCAAATGCATGATCTATAATTACAAAACAAGACCTTTTATGGGTA
ACATTAATGAAGCCAAAATTTTACCACTTCTAGCGGCTTTCTGGGGATTC
CATTCAAGTTTGGAACTCCTTGCCCCTCCCAACCATGCCAGCACAGCAAT
TAACAGAGATGCTAAACTAAACCTTAATTGGAAAAAGAAAGGGTAAAATG
AAAACACAAATAGTTTGTGAAATTTGTCACCAATGCAATACAACCCAACT
ATCCATCACAAGGAACTCACAGAATCCTCCCACCAATAAAGCTTCTTATT
TATTTCTAAGTGGATTCAGCTTATCCCTCAGATAGTAAAGCTTGGCCCTC
CTCACTTTCTTCTTGTCCAGCACCTTTATTTCTAGTATATTAGGTGAGTA
CAAAGGGAAAAGAGATTCGACTCCAACCCCTGCNACCAGCCTCCTCAATC
TAAATGTAGTACTTATACCAGCATTACGCCTTGCTATAACAATACCCTTT
AAAGTTGAAACACGTCTCTTGTTCTCTGGAATTACCACTTTTAGTTGCAC
GATATAACCAGGCTTTATATCGGGGATCTCCCTCTGTGA
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