CF831999

Overview
NameCF831999
Unique NameCF831999
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length689
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig11031 contig Csv1_Contig11031:462..1150. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF831999 vs. ExPASy Swiss-Prot
Match: RL19_EXISA (50S ribosomal protein L19 OS=Exiguobacterium sp. (strain ATCC BAA-1283 / AT1b) GN=rplS PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.878e-15
Identity = 41/87 (47.13%), Postives = 60/87 (68.97%), Query Frame = -1
Query:  423 EIPDIKPGYIVQLKVVIPENKR-RVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLRD 680
            ++P  +PG  V++ V + E  R R+   +G+VI R+  GIS TF +R++  GVGVE  FPL+SP + +I+V+   KVRRAKLYYLR+
Sbjct:   18 DVPAFRPGDTVRVHVKVVEGTRERIQIFEGVVIKRKGGGISETFTVRKISYGVGVERAFPLHSPRVAQIEVVRYGKVRRAKLYYLRN 104          
BLAST of CF831999 vs. ExPASy Swiss-Prot
Match: RL19_DESAP (50S ribosomal protein L19 OS=Desulforudis audaxviator (strain MP104C) GN=rplS PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.878e-15
Identity = 41/86 (47.67%), Postives = 60/86 (69.77%), Query Frame = -1
Query:  426 EIPDIKPGYIVQLKVVIPENKR-RVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLR 680
            +IP+ +PG  V++ V + E +R R+   +G+VI RR  G+S TF +RR+  GVGVE  FPL+SP +  I+V+   +VRRA+LYYLR
Sbjct:   15 DIPEFRPGDTVRVHVKVVEGERQRIQVFEGVVIRRRGGGVSETFTVRRVSYGVGVERTFPLHSPRVDRIEVVRLGRVRRARLYYLR 100          
BLAST of CF831999 vs. ExPASy Swiss-Prot
Match: RL19_ANASP (50S ribosomal protein L19 OS=Anabaena sp. (strain PCC 7120) GN=rplS PE=3 SV=2)

HSP 1 Score: 82.8037 bits (203), Expect = 1.878e-15
Identity = 46/88 (52.27%), Postives = 62/88 (70.45%), Query Frame = -1
Query:  417 IPDIKPGYIVQLKVVIPENKR-RVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLRDKL 677
            +P+I  G  V++ V I E ++ RV   +G+VIARRN GI+ T  +RR+  GVGVE +F L+SP I  IKVL + KVRRAKLYYLR ++
Sbjct:   19 LPEIYIGDTVRVGVKIKEGEKYRVQPYEGVVIARRNGGINETITVRRVFQGVGVERVFLLHSPRIDNIKVLRRGKVRRAKLYYLRGRV 106          
BLAST of CF831999 vs. ExPASy Swiss-Prot
Match: RL19_STAAN (50S ribosomal protein L19 OS=Staphylococcus aureus (strain N315) GN=rplS PE=1 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.453e-15
Identity = 42/86 (48.84%), Postives = 60/86 (69.77%), Query Frame = -1
Query:  426 EIPDIKPGYIVQLKVVIPENKR-RVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLR 680
            ++P  +PG  +++ V I E  R R+   +GIVI RR  G+S TF +R++ +GVGVE  FPL++P I +I+V  + KVRRAKLYYLR
Sbjct:   18 DLPSFRPGDTLRVHVRIIEGTRERIQVFEGIVIKRRGGGVSETFTVRKISSGVGVERTFPLHTPKIEKIEVKRRGKVRRAKLYYLR 103          
BLAST of CF831999 vs. ExPASy Swiss-Prot
Match: RL19_STAAM (50S ribosomal protein L19 OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN=rplS PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.453e-15
Identity = 42/86 (48.84%), Postives = 60/86 (69.77%), Query Frame = -1
Query:  426 EIPDIKPGYIVQLKVVIPENKR-RVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLR 680
            ++P  +PG  +++ V I E  R R+   +GIVI RR  G+S TF +R++ +GVGVE  FPL++P I +I+V  + KVRRAKLYYLR
Sbjct:   18 DLPSFRPGDTLRVHVRIIEGTRERIQVFEGIVIKRRGGGVSETFTVRKISSGVGVERTFPLHTPKIEKIEVKRRGKVRRAKLYYLR 103          
BLAST of CF831999 vs. ExPASy Swiss-Prot
Match: RL19_STAA9 (50S ribosomal protein L19 OS=Staphylococcus aureus (strain JH9) GN=rplS PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.453e-15
Identity = 42/86 (48.84%), Postives = 60/86 (69.77%), Query Frame = -1
Query:  426 EIPDIKPGYIVQLKVVIPENKR-RVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLR 680
            ++P  +PG  +++ V I E  R R+   +GIVI RR  G+S TF +R++ +GVGVE  FPL++P I +I+V  + KVRRAKLYYLR
Sbjct:   18 DLPSFRPGDTLRVHVRIIEGTRERIQVFEGIVIKRRGGGVSETFTVRKISSGVGVERTFPLHTPKIEKIEVKRRGKVRRAKLYYLR 103          
BLAST of CF831999 vs. ExPASy Swiss-Prot
Match: RL19_STAA2 (50S ribosomal protein L19 OS=Staphylococcus aureus (strain JH1) GN=rplS PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.453e-15
Identity = 42/86 (48.84%), Postives = 60/86 (69.77%), Query Frame = -1
Query:  426 EIPDIKPGYIVQLKVVIPENKR-RVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLR 680
            ++P  +PG  +++ V I E  R R+   +GIVI RR  G+S TF +R++ +GVGVE  FPL++P I +I+V  + KVRRAKLYYLR
Sbjct:   18 DLPSFRPGDTLRVHVRIIEGTRERIQVFEGIVIKRRGGGVSETFTVRKISSGVGVERTFPLHTPKIEKIEVKRRGKVRRAKLYYLR 103          
BLAST of CF831999 vs. ExPASy Swiss-Prot
Match: RL19_STAA1 (50S ribosomal protein L19 OS=Staphylococcus aureus (strain Mu3 / ATCC 700698) GN=rplS PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.453e-15
Identity = 42/86 (48.84%), Postives = 60/86 (69.77%), Query Frame = -1
Query:  426 EIPDIKPGYIVQLKVVIPENKR-RVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLR 680
            ++P  +PG  +++ V I E  R R+   +GIVI RR  G+S TF +R++ +GVGVE  FPL++P I +I+V  + KVRRAKLYYLR
Sbjct:   18 DLPSFRPGDTLRVHVRIIEGTRERIQVFEGIVIKRRGGGVSETFTVRKISSGVGVERTFPLHTPKIEKIEVKRRGKVRRAKLYYLR 103          
BLAST of CF831999 vs. ExPASy Swiss-Prot
Match: RL19_RHIME (50S ribosomal protein L19 OS=Rhizobium meliloti GN=rplS PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.453e-15
Identity = 40/91 (43.96%), Postives = 62/91 (68.13%), Query Frame = -1
Query:  420 SQREIPDIKPGYIVQLKV-VIPENKRRVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLRDK 689
            ++R +P+  PG  V++ V V+  N+ RV   +G+ IAR   GI+ +F +R++  G GVE +FP+YSP +  + V+ + KVRRAKLYYLRD+
Sbjct:   17 AKRTLPEFSPGDTVRVNVRVVEGNRTRVQAYEGVCIARSGGGINESFTVRKISYGEGVERVFPVYSPLVESVDVVRRGKVRRAKLYYLRDR 107          
BLAST of CF831999 vs. ExPASy Swiss-Prot
Match: RL19_PROMP (50S ribosomal protein L19 OS=Prochlorococcus marinus subsp. pastoris (strain CCMP1986 / MED4) GN=rplS PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.453e-15
Identity = 41/91 (45.05%), Postives = 64/91 (70.33%), Query Frame = -1
Query:  417 QREIPDIKPGYIVQLKVVIPE-NKRRVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLRDKL 686
            ++++P+I  G  V++ V I E NK RV   +G+VIA+R+ G+  T  +RR+  G+GVE +F L+SP +  +KV  + KVRRAKL+YLRD++
Sbjct:   58 KKQLPEIYVGDTVKVGVKITEGNKERVQPYEGVVIAKRHGGLHQTITVRRIFQGIGVERVFMLHSPQVASLKVERRGKVRRAKLFYLRDRV 148          
The following BLAST results are available for this feature:
BLAST of CF831999 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL19_EXISA1.878e-1547.1350S ribosomal protein L19 OS=Exiguobacterium sp. (... [more]
RL19_DESAP1.878e-1547.6750S ribosomal protein L19 OS=Desulforudis audaxvia... [more]
RL19_ANASP1.878e-1552.2750S ribosomal protein L19 OS=Anabaena sp. (strain ... [more]
RL19_STAAN2.453e-1548.8450S ribosomal protein L19 OS=Staphylococcus aureus... [more]
RL19_STAAM2.453e-1548.8450S ribosomal protein L19 OS=Staphylococcus aureus... [more]
RL19_STAA92.453e-1548.8450S ribosomal protein L19 OS=Staphylococcus aureus... [more]
RL19_STAA22.453e-1548.8450S ribosomal protein L19 OS=Staphylococcus aureus... [more]
RL19_STAA12.453e-1548.8450S ribosomal protein L19 OS=Staphylococcus aureus... [more]
RL19_RHIME2.453e-1543.9650S ribosomal protein L19 OS=Rhizobium meliloti GN... [more]
RL19_PROMP2.453e-1545.0550S ribosomal protein L19 OS=Prochlorococcus marin... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_01C09_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01C09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF831999 ID=CF831999; Name=CF831999; organism=Citrus sinensis; type=EST; length=689bp
TTTTAAACAGACCCATTACCTTCATCTCCATATTATTAACCGAGTACATG
CAGCCTTACGCGTATTGATGGAAGAAATGAGCTGTCTCTGGCGCAATGCC
CATGTTCAAATGCATGATCTATAATTACAAAACAAGACCTTTTATGGGTA
ACATTAATGAAGCCAAAATTTTACCACTTCTAGCGGCTTTCTGGGGATTC
CATTCAAGTTTGGAACTCCTTGCCCCTCCCAACCATGCCAGCACAGCAAT
TAACAGAGATGCTAAACTAAACCTTAATTGGAAAAAGAAAGGGTAAAATG
AAAACACAAATAGTTTGTGAAATTTGTCACCAATGCAATACAACCCAACT
ATCCATCACAAGGAACTCACAGAATCCTCCCACCAATAAAGCTTCTTATT
TATTTCTAAGTGGATTCAGCTTATCCCTCAGATAGTAAAGCTTGGCCCTC
CTCACTTTCTTCTTGTCCAGCACCTTTATTTCTAGTATATTAGGTGAGTA
CAAAGGGAAAAGAGATTCGACTCCAACCCCTGCNACCAGCCTCCTCAATC
TAAATGTAGTACTTATACCAGCATTACGCCTTGCTATAACAATACCCTTT
AAAGTTGAAACACGTCTCTTGTTCTCTGGAATTACCACTTTTAGTTGCAC
GATATAACCAGGCTTTATATCGGGGATCTCCCTCTGTGA
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