CF831999

Overview
NameCF831999
Unique NameCF831999
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length689
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig11031 contig Csv1_Contig11031:462..1150. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF831999 vs. ExPASy Swiss-Prot
Match: RL19_CORU7 (50S ribosomal protein L19 OS=Corynebacterium urealyticum (strain ATCC 43042 / DSM 7109) GN=rplS PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.453e-15
Identity = 41/88 (46.59%), Postives = 62/88 (70.45%), Query Frame = -1
Query:  420 EIPDIKPGYIVQLKV-VIPENKRRVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLRDK 680
            +IP+ + G  V + + VI  +K RV   +G+VI R+ +GI  TF +R++  G+GVE   P++SPNI +++VL + KVRRAKLYYLRD+
Sbjct:   15 DIPEFRAGDTVDVHLKVIEGSKSRVQVFRGVVIKRQGSGIRETFTVRKVSFGIGVERTIPVHSPNIDKLEVLSRGKVRRAKLYYLRDR 102          
BLAST of CF831999 vs. ExPASy Swiss-Prot
Match: RL19_COPPD (50S ribosomal protein L19 OS=Coprothermobacter proteolyticus (strain ATCC 35245 / DSM 5265 / BT) GN=rplS PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.453e-15
Identity = 41/95 (43.16%), Postives = 66/95 (69.47%), Query Frame = -1
Query:  420 QREIPDIKPGYIVQLKVVIPE------NKRRVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLRDK 686
            + ++P ++ G  V++K    E      +K RV   +GIVIA++  GIS +  +R++ +GVGVE  FPL+SPN+++++V+ + KVRRAKLYYLR+K
Sbjct:   13 REDVPPVEVGDTVRVKWRFTERDRSGEDKSRVQAYEGIVIAKKGTGISESIVVRKISSGVGVEKTFPLHSPNLVDLEVVTRGKVRRAKLYYLREK 107          
BLAST of CF831999 vs. ExPASy Swiss-Prot
Match: RL19_BREBN (50S ribosomal protein L19 OS=Brevibacillus brevis (strain 47 / JCM 6285 / NBRC 100599) GN=rplS PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.453e-15
Identity = 41/91 (45.05%), Postives = 63/91 (69.23%), Query Frame = -1
Query:  417 QREIPDIKPGYIVQLKVVIPENKR-RVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLRDKL 686
            +++IP  +PG  V++ V + E +R R+   +G+ I RR  GIS TF  R++  GVGVE  FP+++P I +I+++   KVRRAKLYYLRD++
Sbjct:   14 KQDIPAFRPGDTVRVHVKVIEGQRERIQLFEGVCIRRRGTGISETFTARKISYGVGVERTFPVHTPKIDKIEIVRHGKVRRAKLYYLRDRV 104          
BLAST of CF831999 vs. ExPASy Swiss-Prot
Match: RL19_BACHD (50S ribosomal protein L19 OS=Bacillus halodurans GN=rplS PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.453e-15
Identity = 41/87 (47.13%), Postives = 60/87 (68.97%), Query Frame = -1
Query:  423 EIPDIKPGYIVQLKVVIPENKR-RVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLRD 680
            ++P  +PG  +++ V + E  R R+   +G+VI RR  G+S TF +R++  GVGVE  FPL+SP I +I+V  + KVRRAKLYYLR+
Sbjct:   16 DLPSFRPGDTLRVHVKVIEGSRERIQVFEGVVIKRRGTGVSETFTVRKISYGVGVERTFPLHSPKIDKIEVKRRGKVRRAKLYYLRN 102          
BLAST of CF831999 vs. ExPASy Swiss-Prot
Match: RK19_GUITH (50S ribosomal protein L19, chloroplastic OS=Guillardia theta GN=rpl19 PE=3 SV=2)

HSP 1 Score: 82.4185 bits (202), Expect = 2.453e-15
Identity = 38/91 (41.76%), Postives = 63/91 (69.23%), Query Frame = -1
Query:  420 SQREIPDIKPGYIVQLKVVIPE-NKRRVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLRDK 689
            S + +P ++ G  V+L V I E NK R+   +G++I++ N GI+ T  +RR++ G+G+E ++ L+SP +  I++L K K+RRAKLYYLR +
Sbjct:   16 SNKTLPQLQVGDTVRLGVSITEGNKERIQATEGVIISKSNCGINLTITIRRVLQGIGIERVYLLHSPKLKSIEILRKSKIRRAKLYYLRTR 106          
BLAST of CF831999 vs. ExPASy Swiss-Prot
Match: RL19_STRZT (50S ribosomal protein L19 OS=Streptococcus pneumoniae (strain Taiwan19F-14) GN=rplS PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 3.203e-15
Identity = 39/86 (45.35%), Postives = 61/86 (70.93%), Query Frame = -1
Query:  426 EIPDIKPGYIVQLKVVIPE-NKRRVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLR 680
            +IP  +PG  V++   + E N+ R+   +G+VIAR+ AGIS  + +R++  GVGVE +FP+++P + +I+V+   KVRRAKLYYLR
Sbjct:   16 DIPSFRPGDTVRVHAKVVEGNRERIQIFEGVVIARKGAGISENYTVRKISNGVGVERIFPIHTPRVEKIEVVRYGKVRRAKLYYLR 101          
BLAST of CF831999 vs. ExPASy Swiss-Prot
Match: RL19_STRZP (50S ribosomal protein L19 OS=Streptococcus pneumoniae (strain P1031) GN=rplS PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 3.203e-15
Identity = 39/86 (45.35%), Postives = 61/86 (70.93%), Query Frame = -1
Query:  426 EIPDIKPGYIVQLKVVIPE-NKRRVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLR 680
            +IP  +PG  V++   + E N+ R+   +G+VIAR+ AGIS  + +R++  GVGVE +FP+++P + +I+V+   KVRRAKLYYLR
Sbjct:   16 DIPSFRPGDTVRVHAKVVEGNRERIQIFEGVVIARKGAGISENYTVRKISNGVGVERIFPIHTPRVEKIEVVRYGKVRRAKLYYLR 101          
BLAST of CF831999 vs. ExPASy Swiss-Prot
Match: RL19_STRZJ (50S ribosomal protein L19 OS=Streptococcus pneumoniae (strain JJA) GN=rplS PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 3.203e-15
Identity = 39/86 (45.35%), Postives = 61/86 (70.93%), Query Frame = -1
Query:  426 EIPDIKPGYIVQLKVVIPE-NKRRVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLR 680
            +IP  +PG  V++   + E N+ R+   +G+VIAR+ AGIS  + +R++  GVGVE +FP+++P + +I+V+   KVRRAKLYYLR
Sbjct:   16 DIPSFRPGDTVRVHAKVVEGNRERIQIFEGVVIARKGAGISENYTVRKISNGVGVERIFPIHTPRVEKIEVVRYGKVRRAKLYYLR 101          
BLAST of CF831999 vs. ExPASy Swiss-Prot
Match: RL19_STRPS (50S ribosomal protein L19 OS=Streptococcus pneumoniae (strain CGSP14) GN=rplS PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 3.203e-15
Identity = 39/86 (45.35%), Postives = 61/86 (70.93%), Query Frame = -1
Query:  426 EIPDIKPGYIVQLKVVIPE-NKRRVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLR 680
            +IP  +PG  V++   + E N+ R+   +G+VIAR+ AGIS  + +R++  GVGVE +FP+++P + +I+V+   KVRRAKLYYLR
Sbjct:   16 DIPSFRPGDTVRVHAKVVEGNRERIQIFEGVVIARKGAGISENYTVRKISNGVGVERIFPIHTPRVEKIEVVRYGKVRRAKLYYLR 101          
BLAST of CF831999 vs. ExPASy Swiss-Prot
Match: RL19_STRPN (50S ribosomal protein L19 OS=Streptococcus pneumoniae GN=rplS PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 3.203e-15
Identity = 39/86 (45.35%), Postives = 61/86 (70.93%), Query Frame = -1
Query:  426 EIPDIKPGYIVQLKVVIPE-NKRRVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLR 680
            +IP  +PG  V++   + E N+ R+   +G+VIAR+ AGIS  + +R++  GVGVE +FP+++P + +I+V+   KVRRAKLYYLR
Sbjct:   16 DIPSFRPGDTVRVHAKVVEGNRERIQIFEGVVIARKGAGISENYTVRKISNGVGVERIFPIHTPRVEKIEVVRYGKVRRAKLYYLR 101          
The following BLAST results are available for this feature:
BLAST of CF831999 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL19_CORU72.453e-1546.5950S ribosomal protein L19 OS=Corynebacterium ureal... [more]
RL19_COPPD2.453e-1543.1650S ribosomal protein L19 OS=Coprothermobacter pro... [more]
RL19_BREBN2.453e-1545.0550S ribosomal protein L19 OS=Brevibacillus brevis ... [more]
RL19_BACHD2.453e-1547.1350S ribosomal protein L19 OS=Bacillus halodurans G... [more]
RK19_GUITH2.453e-1541.7650S ribosomal protein L19, chloroplastic OS=Guilla... [more]
RL19_STRZT3.203e-1545.3550S ribosomal protein L19 OS=Streptococcus pneumon... [more]
RL19_STRZP3.203e-1545.3550S ribosomal protein L19 OS=Streptococcus pneumon... [more]
RL19_STRZJ3.203e-1545.3550S ribosomal protein L19 OS=Streptococcus pneumon... [more]
RL19_STRPS3.203e-1545.3550S ribosomal protein L19 OS=Streptococcus pneumon... [more]
RL19_STRPN3.203e-1545.3550S ribosomal protein L19 OS=Streptococcus pneumon... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_01C09_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01C09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF831999 ID=CF831999; Name=CF831999; organism=Citrus sinensis; type=EST; length=689bp
TTTTAAACAGACCCATTACCTTCATCTCCATATTATTAACCGAGTACATG
CAGCCTTACGCGTATTGATGGAAGAAATGAGCTGTCTCTGGCGCAATGCC
CATGTTCAAATGCATGATCTATAATTACAAAACAAGACCTTTTATGGGTA
ACATTAATGAAGCCAAAATTTTACCACTTCTAGCGGCTTTCTGGGGATTC
CATTCAAGTTTGGAACTCCTTGCCCCTCCCAACCATGCCAGCACAGCAAT
TAACAGAGATGCTAAACTAAACCTTAATTGGAAAAAGAAAGGGTAAAATG
AAAACACAAATAGTTTGTGAAATTTGTCACCAATGCAATACAACCCAACT
ATCCATCACAAGGAACTCACAGAATCCTCCCACCAATAAAGCTTCTTATT
TATTTCTAAGTGGATTCAGCTTATCCCTCAGATAGTAAAGCTTGGCCCTC
CTCACTTTCTTCTTGTCCAGCACCTTTATTTCTAGTATATTAGGTGAGTA
CAAAGGGAAAAGAGATTCGACTCCAACCCCTGCNACCAGCCTCCTCAATC
TAAATGTAGTACTTATACCAGCATTACGCCTTGCTATAACAATACCCTTT
AAAGTTGAAACACGTCTCTTGTTCTCTGGAATTACCACTTTTAGTTGCAC
GATATAACCAGGCTTTATATCGGGGATCTCCCTCTGTGA
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