CF832011

Overview
NameCF832011
Unique NameCF832011
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length834
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2871 contig Csv1_Contig2871:343..1176. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF832011 vs. ExPASy Swiss-Prot
Match: PALY_DIGLA (Phenylalanine ammonia-lyase OS=Digitalis lanata PE=2 SV=1)

HSP 1 Score: 355.525 bits (911), Expect = 2.079e-97
Identity = 173/222 (77.93%), Postives = 196/222 (88.29%), Query Frame = -3
Query:  167 VNSLGLISSRKTAEAVDILKLMSSTFLVALCQAIDLRHLEENLKHTVKNTVSQVAKKVLTVGASGELHPSRFCEKDLLKAADREHVFAYIDDPCSATYPLMQKLRQVLVEHALNNGENEKTANSSIFQKIAAFEEELKTVLPKEVENARQTVENGSPTIPNRIKECRSYPLYRLVREELGSNFLTGEKVTSPGEEFDKVFTAMCQGKIIDPMLECLREWNGA 832
            VNSLGLISSRKT EA+DILKLMSST+LVALCQAIDLRHLEENL+ +VKNT+SQVAK+ LT G +GELHPSRFCE DLL+  DRE+VFAY+DDPCSATYPLMQKLRQVLVEHAL NGENEK A++SIFQKI AFE ELK VLPKEVE+AR  +E+G P I NRI ECRSYPLY+ +REELG+NFLTGEKV SPGEE D+VFTAM +G I+DP+L+CL  WNGA
Sbjct:  487 VNSLGLISSRKTVEALDILKLMSSTYLVALCQAIDLRHLEENLRLSVKNTISQVAKRTLTTGVNGELHPSRFCELDLLRVVDREYVFAYVDDPCSATYPLMQKLRQVLVEHALKNGENEKNASTSIFQKIEAFEAELKAVLPKEVESARVALEDGKPAIANRITECRSYPLYKFIREELGTNFLTGEKVMSPGEECDRVFTAMSKGLIVDPLLKCLEGWNGA 708          
BLAST of CF832011 vs. ExPASy Swiss-Prot
Match: PAL1_IPOBA (Phenylalanine ammonia-lyase OS=Ipomoea batatas GN=PAL PE=2 SV=1)

HSP 1 Score: 354.369 bits (908), Expect = 4.631e-97
Identity = 172/222 (77.48%), Postives = 195/222 (87.84%), Query Frame = -3
Query:  167 VNSLGLISSRKTAEAVDILKLMSSTFLVALCQAIDLRHLEENLKHTVKNTVSQVAKKVLTVGASGELHPSRFCEKDLLKAADREHVFAYIDDPCSATYPLMQKLRQVLVEHALNNGENEKTANSSIFQKIAAFEEELKTVLPKEVENARQTVENGSPTIPNRIKECRSYPLYRLVREELGSNFLTGEKVTSPGEEFDKVFTAMCQGKIIDPMLECLREWNGA 832
            VNSLGLIS+RKTAEAVD+LKLMSST+LVALCQAIDLR LEENL++ VKN V+QVAK+ LTVGA+GELHP+RFCEKDLL+  DRE+VFAY DDPCSA YPLMQKLRQ LV+HAL NGENEK   +SIF K+AAFE+ELK VLPKEVE AR  VE+G+P IPNRIKECRSYPLY+ VRE LG+  LTGEKV SPGEE DKVFTAMC+G IIDP+LECL+ W+GA
Sbjct:  481 VNSLGLISARKTAEAVDVLKLMSSTYLVALCQAIDLRFLEENLRNAVKNAVTQVAKRTLTVGANGELHPARFCEKDLLRVVDREYVFAYADDPCSANYPLMQKLRQALVDHALQNGENEKNTGTSIFLKVAAFEDELKAVLPKEVEAARIAVESGNPAIPNRIKECRSYPLYKFVREGLGTELLTGEKVRSPGEECDKVFTAMCEGSIIDPLLECLKSWDGA 702          
BLAST of CF832011 vs. ExPASy Swiss-Prot
Match: PAL1_PHAVU (Phenylalanine ammonia-lyase class 1 (Fragment) OS=Phaseolus vulgaris PE=2 SV=2)

HSP 1 Score: 353.984 bits (907), Expect = 6.048e-97
Identity = 172/222 (77.48%), Postives = 194/222 (87.39%), Query Frame = -3
Query:  167 VNSLGLISSRKTAEAVDILKLMSSTFLVALCQAIDLRHLEENLKHTVKNTVSQVAKKVLTVGASGELHPSRFCEKDLLKAADREHVFAYIDDPCSATYPLMQKLRQVLVEHALNNGENEKTANSSIFQKIAAFEEELKTVLPKEVENARQTVENGSPTIPNRIKECRSYPLYRLVREELGSNFLTGEKVTSPGEEFDKVFTAMCQGKIIDPMLECLREWNGA 832
            VNSL LIS+RKT E+++ILKLMSSTFL+ LCQAIDLRHLEENLK +VKNTVSQV+K+ LT G +GELHPSRFCEKDLLK  DRE+VF+YIDDP S TYPLMQKLRQVLV+HAL N ENEK  N+SIFQKIA FEEELKT+LPKEVE+ R   E+G   IPN+IKECRSYPLY+ VREELG+  LTGEKV SPGEEFDK+FTA+CQGKIIDP+LECL EWNGA
Sbjct:  280 VNSLDLISARKTNESIEILKLMSSTFLMGLCQAIDLRHLEENLKSSVKNTVSQVSKRTLTTGGNGELHPSRFCEKDLLKVVDREYVFSYIDDPYSGTYPLMQKLRQVLVDHALINAENEKDVNTSIFQKIATFEEELKTILPKEVESTRAAYESGKAAIPNKIKECRSYPLYKFVREELGTGLLTGEKVKSPGEEFDKLFTAICQGKIIDPLLECLGEWNGA 501          
BLAST of CF832011 vs. ExPASy Swiss-Prot
Match: PAL1_RUBID (Phenylalanine ammonia-lyase 1 OS=Rubus idaeus GN=PAL1 PE=2 SV=1)

HSP 1 Score: 351.288 bits (900), Expect = 3.920e-96
Identity = 173/222 (77.93%), Postives = 193/222 (86.94%), Query Frame = -3
Query:  167 VNSLGLISSRKTAEAVDILKLMSSTFLVALCQAIDLRHLEENLKHTVKNTVSQVAKKVLTVGASGELHPSRFCEKDLLKAADREHVFAYIDDPCSATYPLMQKLRQVLVEHALNNGENEKTANSSIFQKIAAFEEELKTVLPKEVENARQTVENGSPTIPNRIKECRSYPLYRLVREELGSNFLTGEKVTSPGEEFDKVFTAMCQGKIIDPMLECLREWNGA 832
            VNSLGLISSRKT+EAVDILKLMSSTFLVALCQAIDLRHLEENLK  VK TVS VAK+ LTV  +GELHPSRF EKDLL   DRE++F+YIDDPC ATYPLMQKLR  LVEHAL NGE E++AN+SIF KIAAFEEELKT+LPKEV+NAR  +ENG   IPNRIKECRSYPLYR VREELG++ LTGEK+ SPGEE  KVF A+C GK++DP+LECL+EWNGA
Sbjct:  484 VNSLGLISSRKTSEAVDILKLMSSTFLVALCQAIDLRHLEENLKIVVKTTVSNVAKRTLTVSPNGELHPSRFSEKDLLTVVDREYLFSYIDDPCLATYPLMQKLRAELVEHALKNGERERSANTSIFHKIAAFEEELKTILPKEVDNARIEIENGKSEIPNRIKECRSYPLYRFVREELGTSLLTGEKIKSPGEECYKVFNAICAGKLVDPLLECLKEWNGA 705          
BLAST of CF832011 vs. ExPASy Swiss-Prot
Match: PAL4_POPKI (Phenylalanine ammonia-lyase G4 (Fragment) OS=Populus kitakamiensis GN=PALG4 PE=3 SV=1)

HSP 1 Score: 349.747 bits (896), Expect = 1.141e-95
Identity = 172/222 (77.48%), Postives = 198/222 (89.19%), Query Frame = -3
Query:  167 VNSLGLISSRKTAEAVDILKLMSSTFLVALCQAIDLRHLEENLKHTVKNTVSQVAKKVLTVGASGELHPSRFCEKDLLKAADREHVFAYIDDPCSATYPLMQKLRQVLVEHALNNGENEKTANSSIFQKIAAFEEELKTVLPKEVENARQTVENGSPTIPNRIKECRSYPLYRLVREELGSNFLTGEKVTSPGEEFDKVFTAMCQGKIIDPMLECLREWNGA 832
            VNSLGLIS+RKTAEAV+IL +MS+T+LVALCQAIDLRH+EENLK+TVKNTVSQVAK+VLT+G +GELHPSRFCEKDLLK  DRE+VF YIDDPCSATYPLMQKLRQVLV+HAL NGE E+ +++SIFQKI AFEEELK +LPKEVE+AR  +ENG+P IPNRI + RSYPLY+ VREELG+  LTGEKV SPGEEFDKVFTA+C GK+IDP    L+EWNGA
Sbjct:  345 VNSLGLISARKTAEAVEILNVMSTTWLVALCQAIDLRHIEENLKNTVKNTVSQVAKRVLTMGFNGELHPSRFCEKDLLKVVDREYVFTYIDDPCSATYPLMQKLRQVLVDHALMNGEKEQNSSTSIFQKIGAFEEELKILLPKEVESARLELENGNPAIPNRITDRRSYPLYKFVREELGTVLLTGEKVGSPGEEFDKVFTAICAGKLIDPCWSVLKEWNGA 566          
BLAST of CF832011 vs. ExPASy Swiss-Prot
Match: PAL1_SOLLC (Phenylalanine ammonia-lyase OS=Solanum lycopersicum GN=PAL PE=2 SV=1)

HSP 1 Score: 346.665 bits (888), Expect = 9.656e-95
Identity = 169/222 (76.13%), Postives = 194/222 (87.39%), Query Frame = -3
Query:  167 VNSLGLISSRKTAEAVDILKLMSSTFLVALCQAIDLRHLEENLKHTVKNTVSQVAKKVLTVGASGELHPSRFCEKDLLKAADREHVFAYIDDPCSATYPLMQKLRQVLVEHALNNGENEKTANSSIFQKIAAFEEELKTVLPKEVENARQTVENGSPTIPNRIKECRSYPLYRLVREELGSNFLTGEKVTSPGEEFDKVFTAMCQGKIIDPMLECLREWNGA 832
            VNSLGLIS+RKTA+AVDILK+MSST+LVALCQAIDLRHLEENLK  VKNTVSQVAK+ LT+GA+GELHP+RF EK+LL+  DRE++FAY DDPCS+ YPLMQKLRQVLV+ A+ NGE+EK  NSSIFQKI AFE+EL  VLPKEVE+ R   E+G+P I NRI ECRSYPLYRLVREELG+  LTGEKV SPGEE DKVFTA+C G+IIDP+LECL+ WNGA
Sbjct:  478 VNSLGLISARKTAKAVDILKIMSSTYLVALCQAIDLRHLEENLKSVVKNTVSQVAKRTLTMGANGELHPARFSEKELLRVVDREYLFAYADDPCSSNYPLMQKLRQVLVDQAMKNGESEKNVNSSIFQKIGAFEDELIAVLPKEVESVRAVFESGNPLIRNRITECRSYPLYRLVREELGTELLTGEKVRSPGEEIDKVFTAICNGQIIDPLLECLKSWNGA 699          
BLAST of CF832011 vs. ExPASy Swiss-Prot
Match: PAL1_LITER (Phenylalanine ammonia-lyase 1 OS=Lithospermum erythrorhizon PE=2 SV=1)

HSP 1 Score: 346.28 bits (887), Expect = 1.261e-94
Identity = 168/222 (75.68%), Postives = 191/222 (86.04%), Query Frame = -3
Query:  167 VNSLGLISSRKTAEAVDILKLMSSTFLVALCQAIDLRHLEENLKHTVKNTVSQVAKKVLTVGASGELHPSRFCEKDLLKAADREHVFAYIDDPCSATYPLMQKLRQVLVEHALNNGENEKTANSSIFQKIAAFEEELKTVLPKEVENARQTVENGSPTIPNRIKECRSYPLYRLVREELGSNFLTGEKVTSPGEEFDKVFTAMCQGKIIDPMLECLREWNGA 832
            VNSLGLISSRKT+EAV+ILKLMSS+FLVAL QA+DLRH+EEN++  VKNTVSQVAK+ LT G +GELHPSRF EKDLL+  DRE+VFAY DDPC  TYPLMQKLR+ LV HAL+NGENEK  N+SIF KIA FEEELK +LPKEVENAR +VENG P I NRI+ECRSYPLY+ VREELG+  LTGEKV SPGEE DKVFTAMC+GK++DP+L CL  WNGA
Sbjct:  484 VNSLGLISSRKTSEAVEILKLMSSSFLVALFQAVDLRHIEENVRLAVKNTVSQVAKRTLTTGVNGELHPSRFSEKDLLRVVDREYVFAYADDPCLTTYPLMQKLRETLVGHALDNGENEKDVNTSIFHKIAIFEEELKAILPKEVENARASVENGIPAISNRIEECRSYPLYKFVREELGTELLTGEKVRSPGEELDKVFTAMCEGKLVDPLLACLEAWNGA 705          
BLAST of CF832011 vs. ExPASy Swiss-Prot
Match: PAL2_LITER (Phenylalanine ammonia-lyase 2 OS=Lithospermum erythrorhizon PE=2 SV=1)

HSP 1 Score: 337.421 bits (864), Expect = 5.858e-92
Identity = 162/222 (72.97%), Postives = 189/222 (85.14%), Query Frame = -3
Query:  167 VNSLGLISSRKTAEAVDILKLMSSTFLVALCQAIDLRHLEENLKHTVKNTVSQVAKKVLTVGASGELHPSRFCEKDLLKAADREHVFAYIDDPCSATYPLMQKLRQVLVEHALNNGENEKTANSSIFQKIAAFEEELKTVLPKEVENARQTVENGSPTIPNRIKECRSYPLYRLVREELGSNFLTGEKVTSPGEEFDKVFTAMCQGKIIDPMLECLREWNGA 832
            VNSLGLISSRKT+EAV+ILKLMSS+FLVALCQA+DLRH+EEN++  VK TVSQVAKK L +G  G LHPSRF EK+LL+  DRE+VFAY DDPCSATYPLMQKLR+VLV HAL N  NEK A++SIF KI  FEEELK +LPKEVENAR +VENG+P IPN+I+ECRSYPLY+ VR ELG+  LTGEKV SPGEE D+VF A+C+GK++DP+L CL  WNGA
Sbjct:  479 VNSLGLISSRKTSEAVEILKLMSSSFLVALCQAVDLRHIEENVRLAVKKTVSQVAKKTLNIGVDGVLHPSRFSEKELLRVVDREYVFAYADDPCSATYPLMQKLREVLVSHALANSGNEKDASTSIFHKIGVFEEELKGILPKEVENARASVENGTPAIPNKIEECRSYPLYKFVRGELGTELLTGEKVRSPGEELDQVFNALCEGKLVDPLLACLEAWNGA 700          
BLAST of CF832011 vs. ExPASy Swiss-Prot
Match: PAL4_ARATH (Phenylalanine ammonia-lyase 4 OS=Arabidopsis thaliana GN=PAL4 PE=1 SV=1)

HSP 1 Score: 326.25 bits (835), Expect = 1.351e-88
Identity = 160/222 (72.07%), Postives = 185/222 (83.33%), Query Frame = -3
Query:  167 VNSLGLISSRKTAEAVDILKLMSSTFLVALCQAIDLRHLEENLKHTVKNTVSQVAKKVLTVGASGELHPSRFCEKDLLKAADREHVFAYIDDPCSATYPLMQKLRQVLVEHALNNGENEKTANSSIFQKIAAFEEELKTVLPKEVENARQTVENGSPTIPNRIKECRSYPLYRLVREELGSNFLTGEKVTSPGEEFDKVFTAMCQGKIIDPMLECLREWNGA 832
            VNSLGLISSRKTAEAVDILKLMS+T+LVALCQA+DLRHLEENLK  VK+ VSQVAK+VLTVGA+GELHPSRF E+D+L+  DRE+VF+Y DDPCS TYPLMQKLR +LV+HAL + E E  + +S+F KI AFE ELK +LPKEVE  R   E G+  I NRIKECRSYPLYR VR+EL +  LTGE V SPGEEFDKVF A+  GK+IDP+LECL+EWNGA
Sbjct:  481 VNSLGLISSRKTAEAVDILKLMSTTYLVALCQAVDLRHLEENLKKAVKSAVSQVAKRVLTVGANGELHPSRFTERDVLQVVDREYVFSYADDPCSLTYPLMQKLRHILVDHALADPEREANSATSVFHKIGAFEAELKLLLPKEVERVRVEYEEGTSAIANRIKECRSYPLYRFVRDELNTELLTGENVRSPGEEFDKVFLAISDGKLIDPLLECLKEWNGA 702          
BLAST of CF832011 vs. ExPASy Swiss-Prot
Match: PALY_WHEAT (Phenylalanine ammonia-lyase OS=Triticum aestivum GN=PAL PE=3 SV=1)

HSP 1 Score: 314.694 bits (805), Expect = 4.066e-85
Identity = 158/221 (71.49%), Postives = 178/221 (80.54%), Query Frame = -3
Query:  170 VNSLGLISSRKTAEAVDILKLMSSTFLVALCQAIDLRHLEENLKHTVKNTVSQVAKKVLTVGASGELHPSRFCEKDLLKAADREHVFAYIDDPCSATYPLMQKLRQVLVEHALNNGENEKTANSSIFQKIAAFEEELKTVLPKEVENARQTVENGSPTIPNRIKECRSYPLYRLVREELGSNFLTGEKVTSPGEEFDKVFTAMCQGKIIDPMLECLREWNG 832
            VNSLGLISSRKTAEA+DILKLMSSTFLVALCQAIDLRHLEEN+K+ VK+ V  VA+K L+   +G LH +RFCEKDLL   DRE VFAY DDPCSA YPLMQK+R VLVEHAL NGE E    +S+F K+A FE+EL+ VLPKEVE AR  VENG+    NRI ECRSYPLYR VR+ELG+ +LTGEK  SPGEE DKVF AM QGK ID +LECL+EWNG
Sbjct:  474 VNSLGLISSRKTAEAIDILKLMSSTFLVALCQAIDLRHLEENVKNAVKSCVKTVARKTLSTDNNGHLHNARFCEKDLLLTIDREAVFAYADDPCSANYPLMQKMRAVLVEHALANGEAEAHVETSVFAKLAMFEQELRAVLPKEVEAARSAVENGTAAQQNRIAECRSYPLYRFVRKELGTEYLTGEKTRSPGEEVDKVFVAMNQGKHIDALLECLKEWNG 694          
The following BLAST results are available for this feature:
BLAST of CF832011 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 48
Match NameE-valueIdentityDescription
PALY_DIGLA2.079e-9777.93Phenylalanine ammonia-lyase OS=Digitalis lanata PE... [more]
PAL1_IPOBA4.631e-9777.48Phenylalanine ammonia-lyase OS=Ipomoea batatas GN=... [more]
PAL1_PHAVU6.048e-9777.48Phenylalanine ammonia-lyase class 1 (Fragment) OS=... [more]
PAL1_RUBID3.920e-9677.93Phenylalanine ammonia-lyase 1 OS=Rubus idaeus GN=P... [more]
PAL4_POPKI1.141e-9577.48Phenylalanine ammonia-lyase G4 (Fragment) OS=Popul... [more]
PAL1_SOLLC9.656e-9576.13Phenylalanine ammonia-lyase OS=Solanum lycopersicu... [more]
PAL1_LITER1.261e-9475.68Phenylalanine ammonia-lyase 1 OS=Lithospermum eryt... [more]
PAL2_LITER5.858e-9272.97Phenylalanine ammonia-lyase 2 OS=Lithospermum eryt... [more]
PAL4_ARATH1.351e-8872.07Phenylalanine ammonia-lyase 4 OS=Arabidopsis thali... [more]
PALY_WHEAT4.066e-8571.49Phenylalanine ammonia-lyase OS=Triticum aestivum G... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS02_01C18_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01C18, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832011 ID=CF832011; Name=CF832011; organism=Citrus sinensis; type=EST; length=834bp
TTTTTTTTTTTTTTACCTTATATGAAAAAACCAATAGAAGTGATCGATTT
ATACAGATGAATTTGTACCACTGACTCGCATGGGCCCTTTTAATGAACAC
AAGAACACAAGGGATTGAAGACCGTGTTATTAAACAAAATAAAAACAACT
AACAAATTGGAAGAGGGGCGCCATTCCATTCCCTGAGACATTCCAGCATT
GGATCAATGATCTTGCCCTGGCACATTGCTGTAAACACTTTGTCAAATTC
CTCGCCGGGCGATGTAACTTTTTCCCCTGTTAGAAAATTAGACCCGAGCT
CCTCCCTCACTAACCTGTACAAAGGGTAAGACCTGCATTCTTTGATCCTG
TTGGGAATTGTTGGACTTCCATTCTCAACAGTCTGCCTGGCGTTCTCAAC
TTCTTTGGGCAAAACGGTTTTCAATTCCTCCTCAAAGGCTGCAATCTTCT
GGAAGATTGAAGAGTTGGCAGTCTTCTCGTTCTCTCCATTGTTCAGTGCG
TGCTCAACAAGTACTTGCCTTAGCTTTTGCATCAATGGATAGGTAGCACT
GCAGGGGTCATCAATGTATGCAAAGACGTGTTCGCGATCAGCCGCTTTGA
GCAGATCCTTCTCACAGAATCTTGATGGATGAAGCTCTCCACTAGCACCG
ACGGTTAAGACTTTCTTAGCTACTTGGCTGACAGTATTCTTGACTGTATG
CTTCAAATTCTCCTCCAAATGTCTCAAATCAATAGCCTGGCAAAGCGCTA
CCAAGAATGTGGAAGACATGAGCTTCAGGATGTCGACTGCTTCAGCAGTC
TTCCTGGAAGAGATCAATCCCAAGGAGTTTACAT
back to top