CF832011

Overview
NameCF832011
Unique NameCF832011
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length834
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2871 contig Csv1_Contig2871:343..1176. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF832011 vs. ExPASy Swiss-Prot
Match: PAL2_ORYSI (Phenylalanine ammonia-lyase OS=Oryza sativa subsp. indica GN=ZB8 PE=3 SV=1)

HSP 1 Score: 307.76 bits (787), Expect = 4.971e-83
Identity = 151/221 (68.33%), Postives = 178/221 (80.54%), Query Frame = -3
Query:  170 VNSLGLISSRKTAEAVDILKLMSSTFLVALCQAIDLRHLEENLKHTVKNTVSQVAKKVLTVGASGELHPSRFCEKDLLKAADREHVFAYIDDPCSATYPLMQKLRQVLVEHALNNGENEKTANSSIFQKIAAFEEELKTVLPKEVENARQTVENGSPTIPNRIKECRSYPLYRLVREELGSNFLTGEKVTSPGEEFDKVFTAMCQGKIIDPMLECLREWNG 832
            VNSLGLISSRKTAEA+DILKLMSSTFL+ALCQA+DLRH+EEN+K  VK+ V  VAKK L+  ++G+LH +RFCEKDLLK  DRE VFAY DDPCS  YPLM+KLR VLVE AL NG  E  A++S+F K+A FEEEL+  LP  +E AR  VENG+  IP+RI ECRSYPLYR VREELG+ +LTGEK  SPGEE +KV  A+ +GK IDP+LECL+EWNG
Sbjct:  487 VNSLGLISSRKTAEAIDILKLMSSTFLIALCQAVDLRHIEENVKSAVKSCVMTVAKKTLSTNSTGDLHVARFCEKDLLKEIDREAVFAYADDPCSHNYPLMKKLRNVLVERALANGAAEFNADTSVFAKVAQFEEELRATLPGAIEAARAAVENGTAAIPSRITECRSYPLYRFVREELGTKYLTGEKTRSPGEELNKVLVAINEGKHIDPLLECLKEWNG 707          
BLAST of CF832011 vs. ExPASy Swiss-Prot
Match: PAL2_ORYSJ (Phenylalanine ammonia-lyase OS=Oryza sativa subsp. japonica GN=ZB8 PE=2 SV=1)

HSP 1 Score: 305.449 bits (781), Expect = 2.467e-82
Identity = 150/221 (67.87%), Postives = 177/221 (80.09%), Query Frame = -3
Query:  170 VNSLGLISSRKTAEAVDILKLMSSTFLVALCQAIDLRHLEENLKHTVKNTVSQVAKKVLTVGASGELHPSRFCEKDLLKAADREHVFAYIDDPCSATYPLMQKLRQVLVEHALNNGENEKTANSSIFQKIAAFEEELKTVLPKEVENARQTVENGSPTIPNRIKECRSYPLYRLVREELGSNFLTGEKVTSPGEEFDKVFTAMCQGKIIDPMLECLREWNG 832
            VNSLGLISSRKT EA+DILKLMSSTFL+ALCQA+DLRH+EEN+K  VK+ V  VAKK L+  ++G+LH +RFCEKDLLK  DRE VFAY DDPCS  YPLM+KLR VLVE AL NG  E  A++S+F K+A FEEEL+  LP  +E AR  VENG+  IP+RI ECRSYPLYR VREELG+ +LTGEK  SPGEE +KV  A+ +GK IDP+LECL+EWNG
Sbjct:  487 VNSLGLISSRKTDEAIDILKLMSSTFLIALCQAVDLRHIEENVKSAVKSCVMTVAKKTLSTNSTGDLHVARFCEKDLLKEIDREAVFAYADDPCSHNYPLMKKLRNVLVERALANGAAEFNADTSVFAKVAQFEEELRATLPGAIEAARAAVENGTAAIPSRITECRSYPLYRFVREELGTKYLTGEKTRSPGEELNKVLVAINEGKHIDPLLECLKEWNG 707          
BLAST of CF832011 vs. ExPASy Swiss-Prot
Match: PALY_HELAN (Phenylalanine ammonia-lyase OS=Helianthus annuus GN=PAL PE=2 SV=2)

HSP 1 Score: 298.516 bits (763), Expect = 3.016e-80
Identity = 147/180 (81.67%), Postives = 162/180 (90.00%), Query Frame = -3
Query:  293 VNSLGLISSRKTAEAVDILKLMSSTFLVALCQAIDLRHLEENLKHTVKNTVSQVAKKVLTVGASGELHPSRFCEKDLLKAADREHVFAYIDDPCSATYPLMQKLRQVLVEHALNNGENEKTANSSIFQKIAAFEEELKTVLPKEVENARQTVENGSPTIPNRIKECRSYPLYRLVREELG 832
            VNSLGLIS+RKTAEAVDILKLMSST+LVALCQ+IDLRHLEEN+K TVKNTVSQVAKKVLT+G +GELHPSRFCEKDLL+  DRE+VFAY DDPC  TYPLMQKLRQVLV+HALNNGE EK AN+SIFQKIA FE+ELK +LPKEVE+ R   ENG+ +IPNRIK CRSYPLYR VREELG
Sbjct:  485 VNSLGLISARKTAEAVDILKLMSSTYLVALCQSIDLRHLEENMKSTVKNTVSQVAKKVLTMGVNGELHPSRFCEKDLLRVVDREYVFAYADDPCLTTYPLMQKLRQVLVDHALNNGETEKNANTSIFQKIATFEDELKAILPKEVESVRVAFENGTMSIPNRIKACRSYPLYRFVREELG 664          
BLAST of CF832011 vs. ExPASy Swiss-Prot
Match: PAL3_PHAVU (Phenylalanine ammonia-lyase class 3 OS=Phaseolus vulgaris PE=3 SV=1)

HSP 1 Score: 298.13 bits (762), Expect = 3.939e-80
Identity = 148/221 (66.97%), Postives = 176/221 (79.64%), Query Frame = -3
Query:  170 VNSLGLISSRKTAEAVDILKLMSSTFLVALCQAIDLRHLEENLKHTVKNTVSQVAKKVLTVGASGELHPSRFCEKDLLKAADREHVFAYIDDPCSATYPLMQKLRQVLVEHALNNGENEKTANSSIFQKIAAFEEELKTVLPKEVENARQTVENGSPTIPNRIKECRSYPLYRLVREELGSNFLTGEKVTSPGEEFDKVFTAMCQGKIIDPMLECLREWNG 832
            VNSLGLIS+ KT EA++ILKLMSST+LVALCQAIDLRHLEE  K+TVKNTVS+VA K LT     E +P RF E++LLK  DRE+VF+YIDDP +  YPLM KL+QVL E A  +  N+K  +  +F+KI AFE+ELK++LPKEVE+AR   ENG+P  PNRIKECRSYPLY+ VREELG   LTGEK  SP EEF+KV+TAMCQ KIIDP+LECL +WNG
Sbjct:  485 VNSLGLISALKTVEAIEILKLMSSTYLVALCQAIDLRHLEEIFKNTVKNTVSRVALKTLTTEDKEETNPFRFSEEELLKVVDREYVFSYIDDPLNVRYPLMPKLKQVLYEQAHTSVINDKNVSLLVFEKIGAFEDELKSLLPKEVESARVAYENGNPATPNRIKECRSYPLYKFVREELGIRLLTGEKALSPDEEFEKVYTAMCQAKIIDPILECLEDWNG 705          
BLAST of CF832011 vs. ExPASy Swiss-Prot
Match: PAL1_ORYSJ (Phenylalanine ammonia-lyase OS=Oryza sativa subsp. japonica GN=PAL PE=1 SV=2)

HSP 1 Score: 298.13 bits (762), Expect = 3.939e-80
Identity = 149/221 (67.42%), Postives = 180/221 (81.45%), Query Frame = -3
Query:  170 VNSLGLISSRKTAEAVDILKLMSSTFLVALCQAIDLRHLEENLKHTVKNTVSQVAKKVLTVGASGELHPSRFCEKDLLKAADREHVFAYIDDPCSATYPLMQKLRQVLVEHALNNGENEKTANSSIFQKIAAFEEELKTVLPKEVENARQTVENGSPTIPNRIKECRSYPLYRLVREELGSNFLTGEKVTSPGEEFDKVFTAMCQGKIIDPMLECLREWNG 832
            VNSLGL+S+RKT EAVDILKLM+ST++VALCQA+DLRHLEEN+K +VKN V+QVAKKVLT+  +G+L  +RF EK+LL A DRE VF+Y DDPCSA YPLMQKLR VLVEHAL +G+ E  A  S+F KI  FEEEL++ LP+E+E AR  V NG+  + NRI E RS+PLYR VREELG  FLTGEK+ SPGEE +KVF  + QGK+IDPML+CL+EWNG
Sbjct:  477 VNSLGLVSARKTLEAVDILKLMTSTYIVALCQAVDLRHLEENIKSSVKNCVTQVAKKVLTMNPTGDLSSARFSEKNLLTAIDREAVFSYADDPCSANYPLMQKLRAVLVEHALTSGDAEPEA--SVFSKITKFEEELRSALPREIEAARVAVANGTAPVANRIVESRSFPLYRFVREELGCVFLTGEKLKSPGEECNKVFLGISQGKLIDPMLDCLKEWNG 695          
BLAST of CF832011 vs. ExPASy Swiss-Prot
Match: PALY_PINTA (Phenylalanine ammonia-lyase OS=Pinus taeda GN=PAL PE=3 SV=1)

HSP 1 Score: 275.404 bits (703), Expect = 2.734e-73
Identity = 132/221 (59.73%), Postives = 166/221 (75.11%), Query Frame = -3
Query:  170 VNSLGLISSRKTAEAVDILKLMSSTFLVALCQAIDLRHLEENLKHTVKNTVSQVAKKVLTVGASGELHPSRFCEKDLLKAADREHVFAYIDDPCSATYPLMQKLRQVLVEHALNNGENEKTANSSIFQKIAAFEEELKTVLPKEVENARQTVENGSPTIPNRIKECRSYPLYRLVREELGSNFLTGEKVTSPGEEFDKVFTAMCQGKIIDPMLECLREWNG 832
            VNSLGL+S+RK+AEA+DILKLM ST+L ALCQA+DLRHLEEN+  TVK  VSQVAKK L+ G +GEL P RFCEKDLL+  D EHVF+YIDDPC+A+YPL QKLR +LVEHA  N E EK  N+SIF KI  FE ELK  L  +V  AR++ + G+  +P+RI+ECRSYPLY  VR +LG+  L+G +  SPGE  + V+ A+ + K+I P+ +CL  W G
Sbjct:  493 VNSLGLVSARKSAEAIDILKLMLSTYLTALCQAVDLRHLEENMLATVKQIVSQVAKKTLSTGLNGELLPGRFCEKDLLQVVDNEHVFSYIDDPCNASYPLTQKLRNILVEHAFKNAEGEKDPNTSIFNKIPVFEAELKAQLEPQVSLARESYDKGTSPLPDRIQECRSYPLYEFVRNQLGTKLLSGTRTISPGEVIEVVYDAISEDKVIVPLFKCLDGWKG 713          
BLAST of CF832011 vs. ExPASy Swiss-Prot
Match: PAL3_ARATH (Phenylalanine ammonia-lyase 3 OS=Arabidopsis thaliana GN=PAL3 PE=1 SV=3)

HSP 1 Score: 251.136 bits (640), Expect = 5.521e-66
Identity = 136/222 (61.26%), Postives = 159/222 (71.62%), Query Frame = -3
Query:  167 VNSLGLISSRKTAEAVDILKLMSSTFLVALCQAIDLRHLEENLKHTVKNTVSQVAKKVLTVGASGELHPSRFCEKDLLKAADREHVFAYIDDPCSATYPLMQKLRQVLVEHALNNGENEKTANSSIFQKIAAFEEELKTVLPKEVENARQTVENGSPTIPNRIKECRSYPLYRLVREELGSNFLTGEKVTSPGEEFDKVFTAMCQGKIIDPMLECLREWNGA 832
            VNSLGLISSR TAEAV ILKLMS+T+LVALCQA DLRHLEE LK  V   VS  AK VL +       P R  + D+L   +RE+VF+Y+DDP S T PLMQKLR VL + AL   E E     ++F+KI AFE ELK +LPKEVE  R   ENG+  + NRIK+CRSYPLYR VR EL +  LTGE V SPGE+FDKVF A+ QGK+IDP+ ECL+EWNGA
Sbjct:  478 VNSLGLISSRTTAEAVVILKLMSTTYLVALCQAFDLRHLEEILKKAVNEVVSHTAKSVLAI------EPFRKHD-DILGVVNREYVFSYVDDPSSLTNPLMQKLRHVLFDKALAEPEGE---TDTVFRKIGAFEAELKFLLPKEVERVRTEYENGTFNVANRIKKCRSYPLYRFVRNELETRLLTGEDVRSPGEDFDKVFRAISQGKLIDPLFECLKEWNGA 689          
BLAST of CF832011 vs. ExPASy Swiss-Prot
Match: PAL2_SOLTU (Phenylalanine ammonia-lyase 2 (Fragment) OS=Solanum tuberosum GN=PAL-2 PE=3 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 2.186e-38
Identity = 77/94 (81.91%), Postives = 86/94 (91.49%), Query Frame = -3
Query:  551 VNSLGLISSRKTAEAVDILKLMSSTFLVALCQAIDLRHLEENLKHTVKNTVSQVAKKVLTVGASGELHPSRFCEKDLLKAADREHVFAYIDDPC 832
            VNSLGLIS+RKTAEAVDILKLMSST+LVALCQAIDLRHLEENLK  VKNTVSQVAK+ LT+G  GELHP+RFCEK+LL+  DRE++FAY DDPC
Sbjct:  497 VNSLGLISARKTAEAVDILKLMSSTYLVALCQAIDLRHLEENLKSVVKNTVSQVAKRTLTIGVLGELHPARFCEKELLRVVDREYLFAYADDPC 590          
The following BLAST results are available for this feature:
BLAST of CF832011 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 48
Match NameE-valueIdentityDescription
PAL2_ORYSI4.971e-8368.33Phenylalanine ammonia-lyase OS=Oryza sativa subsp.... [more]
PAL2_ORYSJ2.467e-8267.87Phenylalanine ammonia-lyase OS=Oryza sativa subsp.... [more]
PALY_HELAN3.016e-8081.67Phenylalanine ammonia-lyase OS=Helianthus annuus G... [more]
PAL3_PHAVU3.939e-8066.97Phenylalanine ammonia-lyase class 3 OS=Phaseolus v... [more]
PAL1_ORYSJ3.939e-8067.42Phenylalanine ammonia-lyase OS=Oryza sativa subsp.... [more]
PALY_PINTA2.734e-7359.73Phenylalanine ammonia-lyase OS=Pinus taeda GN=PAL ... [more]
PAL3_ARATH5.521e-6661.26Phenylalanine ammonia-lyase 3 OS=Arabidopsis thali... [more]
PAL2_SOLTU2.186e-3881.91Phenylalanine ammonia-lyase 2 (Fragment) OS=Solanu... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS02_01C18_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01C18, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832011 ID=CF832011; Name=CF832011; organism=Citrus sinensis; type=EST; length=834bp
TTTTTTTTTTTTTTACCTTATATGAAAAAACCAATAGAAGTGATCGATTT
ATACAGATGAATTTGTACCACTGACTCGCATGGGCCCTTTTAATGAACAC
AAGAACACAAGGGATTGAAGACCGTGTTATTAAACAAAATAAAAACAACT
AACAAATTGGAAGAGGGGCGCCATTCCATTCCCTGAGACATTCCAGCATT
GGATCAATGATCTTGCCCTGGCACATTGCTGTAAACACTTTGTCAAATTC
CTCGCCGGGCGATGTAACTTTTTCCCCTGTTAGAAAATTAGACCCGAGCT
CCTCCCTCACTAACCTGTACAAAGGGTAAGACCTGCATTCTTTGATCCTG
TTGGGAATTGTTGGACTTCCATTCTCAACAGTCTGCCTGGCGTTCTCAAC
TTCTTTGGGCAAAACGGTTTTCAATTCCTCCTCAAAGGCTGCAATCTTCT
GGAAGATTGAAGAGTTGGCAGTCTTCTCGTTCTCTCCATTGTTCAGTGCG
TGCTCAACAAGTACTTGCCTTAGCTTTTGCATCAATGGATAGGTAGCACT
GCAGGGGTCATCAATGTATGCAAAGACGTGTTCGCGATCAGCCGCTTTGA
GCAGATCCTTCTCACAGAATCTTGATGGATGAAGCTCTCCACTAGCACCG
ACGGTTAAGACTTTCTTAGCTACTTGGCTGACAGTATTCTTGACTGTATG
CTTCAAATTCTCCTCCAAATGTCTCAAATCAATAGCCTGGCAAAGCGCTA
CCAAGAATGTGGAAGACATGAGCTTCAGGATGTCGACTGCTTCAGCAGTC
TTCCTGGAAGAGATCAATCCCAAGGAGTTTACAT
back to top