CF832012

Overview
NameCF832012
Unique NameCF832012
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length774
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF832012 vs. ExPASy Swiss-Prot
Match: HUTH_GEOTN (Histidine ammonia-lyase OS=Geobacillus thermodenitrificans (strain NG80-2) GN=hutH PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 1.288e-26
Identity = 75/221 (33.94%), Postives = 116/221 (52.49%), Query Frame = 3
Query:  111 RAAMLVRVNTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKATGPNGEIIDAQEASKQAGFGFFELQPKEGLALVNGTAVGSGLASMVLFEANNLALLSEILSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYVNAAKKLHEIDPLQKPKQDRYALRTSPQWLGPQIEVIRFATKSIEREIN 773
            RA +L+R N LL+GYSGIR  ++E +   LN  I P +P +G++ ASGDL PL+++A  L G          G+ + A +A  QAG     L+ KEGLAL+NGT   + +  +   EA  LA  SE ++A+  E + G  +  D   H+ +    Q E A  +   LDGS  +            ++  QD Y++R  PQ  G  +  +R+  +++E E+N
Sbjct:   96 RAMLLLRANALLKGYSGIRPVVIERLLAFLNSGIHPIVPQQGSLGASGDLAPLAHLALALVGEGEVMY---QGQRMPAIQALSQAGIPPLSLKEKEGLALINGTQAMTAMGVIAYLEAEQLAYDSEWIAALTIEALYGVIDAFDARIHEARGFLEQAEVAERLRRYLDGSQLITRQG--------ERRVQDAYSIRCIPQVHGASLRALRYVKETLEIEMN 305          
BLAST of CF832012 vs. ExPASy Swiss-Prot
Match: HUTH_CAUCR (Histidine ammonia-lyase OS=Caulobacter crescentus GN=hutH PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 1.288e-26
Identity = 77/226 (34.07%), Postives = 116/226 (51.33%), Query Frame = 3
Query:   96 PHSTTRAAMLVRVNTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKATGPNGEIIDAQEASKQAGFGFFELQPKEGLALVNGTAVGSGLASMVLFEANNLALLSEILSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYVNAAKKLHEIDPLQKPKQDRYALRTSPQWLGPQIEVIRFATKSIEREIN 773
            P    R  M +++ +L QG SG+R E +  + ++L   +TP +P +G++ ASGDL PLS++A  + G          G+ + A +A  QAG     L PKEGLAL+NGT   +  A   LFEA  L   + +  A+  E  +G     D   H L+ H GQIE AA +  ++  S     A  L E + +Q P    Y LR  PQ +G  ++++R A  ++  E N
Sbjct:   92 PVPVIRLMMALKLASLAQGASGVRVETVRMLEEMLVEGLTPVVPCQGSVGASGDLAPLSHMAATMIGVGEIFV---GGQRLPAAQALAQAGLEPLTLGPKEGLALLNGTQFSTANALAGLFEAERLFQSALVTGALSTEAAKGSDTPFDPRIHTLRRHVGQIETAAALRALMSASEI--RASHLKEDERVQDP----YCLRCQPQVMGAALDILRQAATTLATEAN 308          
BLAST of CF832012 vs. ExPASy Swiss-Prot
Match: HUTH_CAUCN (Histidine ammonia-lyase OS=Caulobacter crescentus (strain NA1000 / CB15N) GN=hutH PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 1.288e-26
Identity = 77/226 (34.07%), Postives = 116/226 (51.33%), Query Frame = 3
Query:   96 PHSTTRAAMLVRVNTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKATGPNGEIIDAQEASKQAGFGFFELQPKEGLALVNGTAVGSGLASMVLFEANNLALLSEILSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYVNAAKKLHEIDPLQKPKQDRYALRTSPQWLGPQIEVIRFATKSIEREIN 773
            P    R  M +++ +L QG SG+R E +  + ++L   +TP +P +G++ ASGDL PLS++A  + G          G+ + A +A  QAG     L PKEGLAL+NGT   +  A   LFEA  L   + +  A+  E  +G     D   H L+ H GQIE AA +  ++  S     A  L E + +Q P    Y LR  PQ +G  ++++R A  ++  E N
Sbjct:   96 PVPVIRLMMALKLASLAQGASGVRVETVRMLEEMLVEGLTPVVPCQGSVGASGDLAPLSHMAATMIGVGEIFV---GGQRLPAAQALAQAGLEPLTLGPKEGLALLNGTQFSTANALAGLFEAERLFQSALVTGALSTEAAKGSDTPFDPRIHTLRRHVGQIETAAALRALMSASEI--RASHLKEDERVQDP----YCLRCQPQVMGAALDILRQAATTLATEAN 312          
BLAST of CF832012 vs. ExPASy Swiss-Prot
Match: HUTH_BURM1 (Histidine ammonia-lyase OS=Burkholderia multivorans (strain ATCC 17616 / 249) GN=hutH PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 1.288e-26
Identity = 77/250 (30.80%), Postives = 131/250 (52.40%), Query Frame = 3
Query:   24 LQKELIRFLNAGIFGNGTESSHTLPHSTTRAAMLVRVNTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKATGPNGEIIDAQEASKQAGFGFFELQPKEGLALVNGTAVGSGLASMVLFEANNLALLSEILSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYVNAAKKLHEIDPLQKPKQDRYALRTSPQWLGPQIEVIRFATKSIEREIN 773
            LQK L+     G+          +  S+ R  + +++++L +G+SGIR E+++A+ KL N ++ P +P++G++ ASGDL PL++++ +L G       G     +D     + AG     LQ KEGLAL+NGT   + LA   LF   +L   + +  A+  +   G  +  D   H+L+ H GQI+AAA    +L+GS+   + +   ++       QD Y+LR  PQ +G  ++ +R A   +  E N
Sbjct:   74 LQKNLVLSHAVGV-------GEPMARSSVRLLIALKLSSLGRGHSGIRREVMDALIKLFNADVLPLIPVKGSVGASGDLAPLAHMSAVLLGVGEVFIRGERASAVD---GLRVAGLAPLTLQAKEGLALLNGTQASTALALDNLFAIEDLYRTALVAGALSVDAAAGSVKPFDARIHELRGHRGQIDAAAAYRELLEGSAINLSHRDCGKV-------QDPYSLRCQPQVMGACLDQMRHAADVLLVEAN 306          
BLAST of CF832012 vs. ExPASy Swiss-Prot
Match: HUTH_PSYCK (Histidine ammonia-lyase OS=Psychrobacter cryohalolentis (strain K5) GN=hutH PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.683e-26
Identity = 76/238 (31.93%), Postives = 127/238 (53.36%), Query Frame = 3
Query:   60 IFGNGTESSHTLPHSTTRAAMLVRVNTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKATGPNGEIIDAQEASKQAGFGFFELQPKEGLALVNGTAVGSGLASMVLFEANNLALLSEILSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYVNAAKKLHEIDPLQKPKQDRYALRTSPQWLGPQIEVIRFATKSIEREIN 773
            I  +   +   LP +  R  M+++V +L QG SG+R  +++++  L+N+ ITP +P +G++ ASGDL PLS++   + G  +      +G  + A +A  Q G     L  KEGLAL+NGT V + LA    F A +L   + I+ ++  +  +G     D   H+++ H GQIE A     ++ GS+ + A+    + D +Q P    Y LR  PQ +G  +++I  A K++  E N
Sbjct:   84 IVSHSVGTGEALPANVVRLIMVMKVTSLAQGVSGVRRAVVDSLLGLINNQITPNIPAKGSVGASGDLAPLSHMTLAMMGEGHVYV---DGNKVLAADALAQHGLEPITLAAKEGLALINGTQVSTALALRGYFLARDLLETATIVGSLSIDAAKGSDAPFDARIHEVRGHHGQIEIAKAHRQLIKGSA-IRASHDGEQDDRVQDP----YCLRCQPQVMGACLDIINQAGKTLLIESN 313          
BLAST of CF832012 vs. ExPASy Swiss-Prot
Match: HUTH_HUMAN (Histidine ammonia-lyase OS=Homo sapiens GN=HAL PE=1 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.683e-26
Identity = 82/250 (32.80%), Postives = 124/250 (49.60%), Query Frame = 3
Query:   24 LQKELIRFLNAGIFGNGTESSHTLPHSTTRAAMLVRVNTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKATGPNGEIIDAQEASKQAGFGFFELQPKEGLALVNGTAVGSGLASMVLFEANNLALLSEILSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYVNAAKKLHEIDPLQKPKQDRYALRTSPQWLGPQIEVIRFATKSIEREIN 773
            LQ  L+R  ++G+          L     R  + +R+N L +GYSGI  E L+ + ++ N +  P +P +GT+ ASGDL PLS++A  L G    K   P     DA+   +  G     L+PKEGLAL+NGT + + L    +  A+ +A  ++I++A+  EV++G  +  D   H L+ H GQIE A     +LD   + +   + H         QD Y LR  PQ  G   + I F    I  E+N
Sbjct:  186 LQVNLVRSHSSGV-------GKPLSPERCRMLLALRINVLAKGYSGISLETLKQVIEMFNASCLPYVPEKGTVGASGDLAPLSHLALGLVGE--GKMWSPKSGWADAKYVLEAHGLKPVILKPKEGLALINGTQMITSLGCEAVERASAIARQADIVAALTLEVLKGTTKAFDTDIHALRPHRGQIEVAFRFRSLLDSDHHPSEIAESHR---FCDRVQDAYTLRCCPQVHGVVNDTIAFVKNIITTELN 423          
BLAST of CF832012 vs. ExPASy Swiss-Prot
Match: HUTH_AZOSE (Histidine ammonia-lyase OS=Azoarcus sp. (strain EbN1) GN=hutH PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.683e-26
Identity = 79/250 (31.60%), Postives = 127/250 (50.80%), Query Frame = 3
Query:   24 LQKELIRFLNAGIFGNGTESSHTLPHSTTRAAMLVRVNTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKATGPNGEIIDAQEASKQAGFGFFELQPKEGLALVNGTAVGSGLASMVLFEANNLALLSEILSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYVNAAKKLHEIDPLQKPKQDRYALRTSPQWLGPQIEVIRFATKSIEREIN 773
            LQK L+     G+          L   T R  + +++ +L +G+SG+R E++ A+  L N  + P +P +G++ ASGDL PL++++ LL G   +   G +   + A EA   AG     L  KEGLAL+NGT V + LA + LF    +   + +  A+  +   G  +  D   H L+  PGQI+AAA    +L+GS    A +   ++       QD Y+LR  PQ +G  ++ +R A + +  E N
Sbjct:   76 LQKNLVLSHAVGV-------GEPLSAPTVRLVLALKIASLARGHSGVRMELINALLGLFNAGVIPRVPSKGSVGASGDLAPLAHLSALLLGIGEAYVDGRH---VPATEALAIAGLAPMTLAAKEGLALLNGTQVSTALALVNLFAIETVFRTALVAGALSVDAAAGSFKPFDARIHALRGQPGQIDAAATYRQLLEGSGINLAHRDCGKV-------QDPYSLRCQPQVMGACLDQMRHAARVLLIEAN 308          
BLAST of CF832012 vs. ExPASy Swiss-Prot
Match: HUTH_ACICJ (Histidine ammonia-lyase OS=Acidiphilium cryptum (strain JF-5) GN=hutH PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.683e-26
Identity = 84/254 (33.07%), Postives = 130/254 (51.18%), Query Frame = 3
Query:   15 VGALQKELIRFLNAGIFGNGTESSHTLPHSTTRAAMLVRVNTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKATGPNGEIIDAQEASKQAGFGFFELQPKEGLALVNGTAVGSGLASMVLFEANNLALLSEILSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYVNAAKKLHEI-DPLQKPKQDRYALRTSPQWLGPQIEVIRFATKSIEREIN 773
            +  LQ+ L+    AG+          LP    R  + +++ +L +G SG+R+E +EA+  LL+H+I P +P +G++ ASGDL PL+++   L G    +  G  G   DA  A  +AG     L PKEGLAL+NGT V + +A   LF A  L   + +  A+  +  +G     D   H L+ H GQ+  AA +  +L GS      +  H I DP     QD Y+LR  PQ +G   +++  A +++  E N
Sbjct:   69 LATLQRNLVLSHAAGV-------GEALPAPIVRMVIALKLASLARGASGVRWETIEALQGLLDHDILPVIPAQGSVGASGDLAPLAHMTCALLG--IGEVLGAAGR-EDAAAALGRAGMAPLVLGPKEGLALLNGTQVSTAIALTGLFRAERLCRAALLTGALTTDAARGSDAPFDPRIHALRGHAGQMAVAAALRTLLAGS----GIRDSHRIGDP---RVQDPYSLRCQPQVMGAVFDLLGQAGRTLATEAN 305          
BLAST of CF832012 vs. ExPASy Swiss-Prot
Match: HUTH_SALA4 (Histidine ammonia-lyase OS=Salmonella agona (strain SL483) GN=hutH PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 2.198e-26
Identity = 79/251 (31.47%), Postives = 127/251 (50.60%), Query Frame = 3
Query:   24 LQKELIRFLNAGIFGNGTESSHTLPHSTTRAAMLVRVNTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKATGPNGEIIDAQEASKQAGFGFFELQPKEGLALVNGTAVGSGLASMVLFEANNLALLSEILSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHIL-DGSSYVNAAKKLHEIDPLQKPKQDRYALRTSPQWLGPQIEVIRFATKSIEREIN 773
            LQ+ L+    AG+          L  +  R  M++++N+L +G+SGIR  ++EA+  L+N  + P +  +G++ ASGDL PL++++  L G   ++     GE + AQ A K+AG     L  KEGLAL+NGT   +  A   LFEA  L   + +  A+  E + G     D   H  +   GQI+ A +  H+L D S+   +    H++       QD Y+LR  PQ +G  +  +R   + +  E N
Sbjct:   76 LQRSLVLSHAAGV-------GDPLDDAMVRLIMVLKINSLARGFSGIRLSVIEALIALVNAGVYPLILAKGSVGASGDLAPLAHLSLTLLGEGKARW---QGEWLPAQTALKKAGLEPVALAAKEGLALLNGTQASTAFALRGLFEAQELFASAVVCGALTTEAVLGSRRPFDARIHAARGQQGQIDVARLFRHLLTDTSAIAESHHHCHKV-------QDPYSLRCQPQVMGACLTQLRQTKEVLLAEAN 309          
BLAST of CF832012 vs. ExPASy Swiss-Prot
Match: HUTH_PSEA6 (Histidine ammonia-lyase OS=Pseudoalteromonas atlantica (strain T6c / BAA-1087) GN=hutH PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 2.198e-26
Identity = 82/250 (32.80%), Postives = 125/250 (50.00%), Query Frame = 3
Query:   24 LQKELIRFLNAGIFGNGTESSHTLPHSTTRAAMLVRVNTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKATGPNGEIIDAQEASKQAGFGFFELQPKEGLALVNGTAVGSGLASMVLFEANNLALLSEILSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYVNAAKKLHEIDPLQKPKQDRYALRTSPQWLGPQIEVIRFATKSIEREIN 773
            LQ+ ++    AGI   GT  S     ST R  ML+++N+L +GYSGIR  ++EA+  L NH + P +P +G++ ASGDL PL++++ +L G          G  I A++    AG     L PKEGLAL+NGT   +  A   LF A N    S  + A+  +   G     +   H ++ H  QI+ A     +L  S    +     ++       QD Y+LR  PQ +G  ++ +RFA + +  E N
Sbjct:   77 LQRSIVLSHAAGI---GTLMSA----STVRLLMLLKINSLARGYSGIRLIVIEALIALYNHQVYPAIPEKGSVGASGDLAPLAHMSAVLLGEGE---VIYQGNQISAEKGLMIAGLQPISLAPKEGLALLNGTQASTAFALQGLFYAENALTSSIAIGALSVDAALGSRVPFNERIHIVRGHQAQIDVATGFRTLLQESEIGKSHGGCEKV-------QDPYSLRCQPQVMGACLQQMRFAKQILVTEAN 309          
The following BLAST results are available for this feature:
BLAST of CF832012 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 251
Match NameE-valueIdentityDescription
HUTH_GEOTN1.288e-2633.94Histidine ammonia-lyase OS=Geobacillus thermodenit... [more]
HUTH_CAUCR1.288e-2634.07Histidine ammonia-lyase OS=Caulobacter crescentus ... [more]
HUTH_CAUCN1.288e-2634.07Histidine ammonia-lyase OS=Caulobacter crescentus ... [more]
HUTH_BURM11.288e-2630.80Histidine ammonia-lyase OS=Burkholderia multivoran... [more]
HUTH_PSYCK1.683e-2631.93Histidine ammonia-lyase OS=Psychrobacter cryohalol... [more]
HUTH_HUMAN1.683e-2632.80Histidine ammonia-lyase OS=Homo sapiens GN=HAL PE=... [more]
HUTH_AZOSE1.683e-2631.60Histidine ammonia-lyase OS=Azoarcus sp. (strain Eb... [more]
HUTH_ACICJ1.683e-2633.07Histidine ammonia-lyase OS=Acidiphilium cryptum (s... [more]
HUTH_SALA42.198e-2631.47Histidine ammonia-lyase OS=Salmonella agona (strai... [more]
HUTH_PSEA62.198e-2632.80Histidine ammonia-lyase OS=Pseudoalteromonas atlan... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_01C18_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01C18, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832012 ID=CF832012; Name=CF832012; organism=Citrus sinensis; type=EST; length=774bp
GGAGAACCAAGACCGTCGGTGCTCTTCAGAAGGAGCTCATTAGATTTTTG
AACGCTGGAATCTTTGGAAACGGAACAGAGTCATCTCACACGCTACCTCA
CTCAACAACAAGGGCAGCCATGCTTGTGAGGGTTAACACTCTTCTCCAGG
GCTACTCTGGCATCCGATTTGAAATCCTGGAAGCGATCACAAAGCTGCTC
AATCACAACATCACTCCATGCCTCCCTCTTCGCGGCACAATCACTGCTTC
AGGGGATCTGGTTCCTCTTTCCTACATTGCCGGACTGCTCACCGGCCGGC
CCAATTCTAAGGCCACCGGGCCTAATGGAGAGATCATTGATGCCCAGGAA
GCCTCTAAACAAGCGGGTTTCGGGTTCTTTGAGTTGCAGCCTAAGGAGGG
TCTTGCTCTTGTCAATGGCACTGCTGTTGGTTCTGGCCTGGCTTCTATGG
TTCTGTTTGAGGCTAACAACCTTGCTCTGTTATCAGAAATTTTGTCAGCT
ATTTTTGCTGAAGTCATGCAAGGCAAACCTGAGTTCACTGATCACTTGAC
ACACAAATTGAAGCACCATCCTGGCCAAATTGAGGCTGCTGCTATAATGG
AACATATCCTCGATGGCAGCTCTTATGTTAACGCGGCTAAGAAGTTGCAT
GAGATTGATCCTCTGCAGAAGCCGAAACAGGATCGTTATGCCCTGAGAAC
TTCACCACAATGGCTCGGCCCTCAGATCGAAGTGATTCGGTTTGCAACCA
AGTCTATTGAACGGGAGATCAACT
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