CF832012

Overview
NameCF832012
Unique NameCF832012
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length774
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF832012 vs. ExPASy Swiss-Prot
Match: HUTH_AGRRK (Histidine ammonia-lyase OS=Agrobacterium radiobacter (strain K84 / ATCC BAA-868) GN=hutH PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 3.509e-24
Identity = 78/257 (30.35%), Postives = 127/257 (49.42%), Query Frame = 3
Query:   15 VGALQKELIRFLNAGIFGNGTESSHTLPHSTTRAAMLVRVNTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKATGPNGEIIDAQEASKQAGFGFFELQPKEGLALVNGTAVGSGLASMVLFEANNLALLSEILSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGS----SYVNAAKKLHEIDPLQKPKQDRYALRTSPQWLGPQIEVIRFATKSIEREIN 773
            V  LQ+ LI     G+          LP +  R  M +++ +L +G SG+R E++  I  +L   + P +P +G++ ASGDL PL+++  ++ G   +      GE +D   A ++AG     L  KEGLAL+NGT V + LA   LF A+  A  + I  A+  +   G         H L+ H GQI+ AA +  +L GS    S++   +++          QD Y +R  PQ  G  ++++R   +++E E N
Sbjct:   72 VATLQRNLILSHCCGV-------GQPLPENVVRLIMSLKLVSLGRGASGVRLELVRLIEGMLAKGVVPVIPEKGSVGASGDLAPLAHMTAVMMGHGEAFYA---GERLDGAAALEKAGLTPVVLAAKEGLALINGTQVSTALALAGLFRAHRAAQAALITGAMSTDAAMGSSAPFHPDIHTLRGHQGQIDTAAALRGLLAGSVIRESHIEGDERV----------QDPYCIRCQPQVDGACLDLLRSVGRTLEIEAN 308          
BLAST of CF832012 vs. ExPASy Swiss-Prot
Match: HUTH_STRGR (Histidine ammonia-lyase OS=Streptomyces griseus GN=hutH PE=2 SV=2)

HSP 1 Score: 111.694 bits (278), Expect = 4.583e-24
Identity = 80/255 (31.37%), Postives = 124/255 (48.63%), Query Frame = 3
Query:    6 TKTVGALQKELIRFLNAGIFGNGTESSHTLPHSTTRAAMLVRVNTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKATGPNGEIIDAQEASKQAGFGFFELQPKEGLALVNGTAVGSGLASMVLFEANNLALLSEILSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYVNAAKKLHEIDPLQKPKQDRYALRTSPQWLGPQIEVIRFATKSIEREI 770
            T+    LQ+ ++R   AG+          +     RA M +R+ T+  G++G+R E+ + +  +LN  ITP +   G++  SGDL PLS+ A  L G    +A GP+G +  A E     G    EL+ KEGLAL+NGT    G+  M L +  NL   ++I +A+  E + G  +      H ++ HPGQ  +A  M  +L GS         H  D   +  QD Y++R +PQ  G   + +  A     RE+
Sbjct:   70 TELRAQLQRNIVRSHAAGM-------GPRVEREVVRALMFLRLKTVASGHTGVRPEVAQTMADVLNAGITPVVHEYGSLGCSGDLAPLSHCALTLMGE--GEAEGPDGTVRPAGELLAAHGIAPVELREKEGLALLNGTDGMLGMLVMALADLRNLYTSADITAALSLEALLGTDKVLAPELHAIRPHPGQGVSADNMSRVLAGSGLTG-----HHQDDAPR-VQDAYSVRCAPQVNGAGRDTLDHAALVAGREL 309          
BLAST of CF832012 vs. ExPASy Swiss-Prot
Match: HUTH_MESSB (Histidine ammonia-lyase OS=Mesorhizobium sp. (strain BNC1) GN=hutH PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 4.583e-24
Identity = 76/257 (29.57%), Postives = 127/257 (49.42%), Query Frame = 3
Query:   15 VGALQKELIRFLNAGIFGNGTESSHTLPHSTTRAAMLVRVNTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKATGPNGEIIDAQEASKQAGFGFFELQPKEGLALVNGTAVGSGLASMVLFEANNLALLSEILSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGS----SYVNAAKKLHEIDPLQKPKQDRYALRTSPQWLGPQIEVIRFATKSIEREIN 773
            V ALQ+ L+     G+          LP +  R  M +++ +L +G SG+R E++  I  +L   + P +P +G++ ASGDL PL+++A ++ G   +      GE ++   A  +AG    EL  KEGLAL+NGT   + LA   LF A+  A  + I  A+  +   G         H L+ H GQI+ A  +  +L+ S    S++   +++          QD Y +R  PQ  G  ++++R   +++E E N
Sbjct:   72 VAALQRNLVLSHCCGV-------GEALPENVVRLMMALKLVSLGRGASGVRLELVRLIEAMLARGVIPVIPEKGSVGASGDLAPLAHMAAVMMGHGEAFF---GGERLNGATALLKAGLQPVELAAKEGLALINGTQTSTALALAGLFRAHRAAQSALITGAMSTDAAMGSSAPFHPEIHTLRGHRGQIDTAEALRALLENSPIRQSHIEGDERV----------QDPYCIRCQPQVDGACLDLLRSVARTLEIEAN 308          
BLAST of CF832012 vs. ExPASy Swiss-Prot
Match: HUTH_STRAW (Histidine ammonia-lyase OS=Streptomyces avermitilis GN=hutH PE=3 SV=2)

HSP 1 Score: 111.309 bits (277), Expect = 5.985e-24
Identity = 79/249 (31.73%), Postives = 125/249 (50.20%), Query Frame = 3
Query:   24 LQKELIRFLNAGIFGNGTESSHTLPHSTTRAAMLVRVNTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKATGPNGEIIDAQEASKQAGFGFFELQPKEGLALVNGTAVGSGLASMVLFEANNLALLSEILSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYVNAAKKLHEIDPLQKPKQDRYALRTSPQWLGPQIEVIRFATKSIEREI 770
            LQ+ ++R   AG+          +     RA M +R+ T+  G++G+R E+ + +  +LN  ITP +   G++  SGDL PLS+ A  L G  +  A GP+G +  A +   + G    EL+ KEGLAL+NGT    G+  M L + + L   ++I +A+  E + G  +      H ++ HPGQ  +AA M  +L GS         H  D   +  QD Y++R +PQ  G   + +  A    ERE+
Sbjct:   76 LQRNIVRSHAAGM-------GPRVEREVVRALMFLRLKTVCSGHTGVRPEVAQTMADILNAGITPVVHEYGSLGCSGDLAPLSHCALTLMGEGD--AEGPDGTVRPAGDLLAEHGITPVELREKEGLALLNGTDGMLGMLVMALADLDALYKSADITAALSLEALLGTDKVLAPELHAIRPHPGQGASAANMLAVLAGSELTG-----HHQDDAPR-VQDAYSVRCAPQVAGAGRDTLAHARLVAEREL 309          
BLAST of CF832012 vs. ExPASy Swiss-Prot
Match: HUTH_RHILO (Histidine ammonia-lyase OS=Rhizobium loti GN=hutH PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 5.985e-24
Identity = 76/250 (30.40%), Postives = 127/250 (50.80%), Query Frame = 3
Query:   24 LQKELIRFLNAGIFGNGTESSHTLPHSTTRAAMLVRVNTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKATGPNGEIIDAQEASKQAGFGFFELQPKEGLALVNGTAVGSGLASMVLFEANNLALLSEILSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYVNAAKKLHEIDPLQKPKQDRYALRTSPQWLGPQIEVIRFATKSIEREIN 773
            LQ+ ++    AG+          +P +  R  M +++ +L QG SG+R E ++ +  +L +++ P +P +G++ ASGDL PLS++  ++ G    +   P+G    A+ A    G     L  KEGLAL+NGT   +  A   LFEA  L   + +  A+  +  +G     D   H L+ H GQIE A  + +++ GS    A ++ H +    +  QD Y LR  PQ +G  ++V+R A  ++  E N
Sbjct:   75 LQRNIVLSHAAGV-------GEPMPVAIARLMMALKLASLAQGASGVRPETIDLLQAMLANDVIPVVPAQGSVGASGDLAPLSHMTAVMIG--VGECFTPHGR-FPAKVAFVSHGLEPVTLGAKEGLALLNGTQFSTAYALAALFEAEVLYQSALVAGALSTDAAKGSDAPFDPRIHLLRKHRGQIETAEALRNLMAGS----AIRESHRVG--DERVQDPYCLRCQPQVMGAALDVLRKAADTLGTEAN 308          
BLAST of CF832012 vs. ExPASy Swiss-Prot
Match: HUTH_BRASB (Histidine ammonia-lyase OS=Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182) GN=hutH PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 7.817e-24
Identity = 74/231 (32.03%), Postives = 122/231 (52.81%), Query Frame = 3
Query:   96 PHSTTRAAMLVRVNTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKATGPNGEIIDAQEASKQAGFGFFELQPKEGLALVNGTAVGSGLASMVLFEANNL---ALLSEILS--AIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYVNAAKKLHEIDPLQKPKQDRYALRTSPQWLGPQIEVIRFATKSIEREIN 773
            P +  R  M +++ +L +G SG+R EI+E +  +L   + P +P +G++ ASGDL PL+++  ++ G   +     +G ++  +EA   AG     L PKEGLAL+NGT   +  A   L  A++L   AL++  LS  A  A     +PE        L+ HPGQI A  ++  +LDGS     A +L  ++  ++  QD Y LR  PQ  G  ++++    +++  E N
Sbjct:   92 PEAVVRLMMALKIISLGRGASGVRREIIEQLQAMLARGVCPFVPQQGSVGASGDLAPLAHMTAVMIGEGQAFV---DGRLVPGREALAHAGLAPVTLGPKEGLALINGTQFSTAYALAGLLRAHDLLKAALVTGALSVDAAMASTAPFRPEI-----QALRGHPGQIAAGRVLTELLDGS-----AIRLSHLEGDER-VQDPYCLRCQPQVAGAALDLLTQTARTLVTEAN 308          
BLAST of CF832012 vs. ExPASy Swiss-Prot
Match: HUTH_BRUAB (Histidine ammonia-lyase OS=Brucella abortus GN=hutH PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 1.021e-23
Identity = 77/253 (30.43%), Postives = 127/253 (50.20%), Query Frame = 3
Query:   15 VGALQKELIRFLNAGIFGNGTESSHTLPHSTTRAAMLVRVNTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKATGPNGEIIDAQEASKQAGFGFFELQPKEGLALVNGTAVGSGLASMVLFEANNLALLSEILSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYVNAAKKLHEIDPLQKPKQDRYALRTSPQWLGPQIEVIRFATKSIEREIN 773
            V  LQ+ LI     G+          L  +  R  M +++ +L +G SG+R E++  I  +L   + P +P +G++ ASGDL PL+++   + G   +      GE +   +A  +AG     L  KEGLAL+NGT   + LA   LF A+  A  + I  A+  +   G         H+L+ H GQI+A   +  +L+GS    A ++ H ++  Q+  QD Y +R  PQ  G  ++++R A +++E E N
Sbjct:   72 VATLQRNLILSHCCGV-------GEPLSENIVRLIMALKLVSLGRGASGVRLEVITLIEAMLEKGVIPMIPEKGSVGASGDLAPLAHMTAAMIGEGEAFY---RGERLSGAKALGKAGLKPVVLAAKEGLALINGTQTSTALALAGLFRAHRAARTALITGALSTDAAMGSDAPFHEEIHQLRGHKGQIDAGRALRTLLEGS----AIRRSH-LEGDQR-VQDPYCIRCQPQVDGACLDILRQAARTLEIEAN 308          
BLAST of CF832012 vs. ExPASy Swiss-Prot
Match: HUTH_BRUA2 (Histidine ammonia-lyase OS=Brucella abortus (strain 2308) GN=hutH PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 1.021e-23
Identity = 77/253 (30.43%), Postives = 127/253 (50.20%), Query Frame = 3
Query:   15 VGALQKELIRFLNAGIFGNGTESSHTLPHSTTRAAMLVRVNTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKATGPNGEIIDAQEASKQAGFGFFELQPKEGLALVNGTAVGSGLASMVLFEANNLALLSEILSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYVNAAKKLHEIDPLQKPKQDRYALRTSPQWLGPQIEVIRFATKSIEREIN 773
            V  LQ+ LI     G+          L  +  R  M +++ +L +G SG+R E++  I  +L   + P +P +G++ ASGDL PL+++   + G   +      GE +   +A  +AG     L  KEGLAL+NGT   + LA   LF A+  A  + I  A+  +   G         H+L+ H GQI+A   +  +L+GS    A ++ H ++  Q+  QD Y +R  PQ  G  ++++R A +++E E N
Sbjct:   72 VATLQRNLILSHCCGV-------GEPLSENIVRLIMALKLVSLGRGASGVRLEVITLIEAMLEKGVIPMIPEKGSVGASGDLAPLAHMTAAMIGEGEAFY---RGERLSGAKALGKAGLKPVVLAAKEGLALINGTQTSTALALAGLFRAHRAARTALITGALSTDAAMGSDAPFHEEIHQLRGHKGQIDAGRALRTLLEGS----AIRRSH-LEGDQR-VQDPYCIRCQPQVDGACLDILRQAARTLEIEAN 308          
BLAST of CF832012 vs. ExPASy Swiss-Prot
Match: HUTH_BRUA1 (Histidine ammonia-lyase OS=Brucella abortus (strain S19) GN=hutH PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 1.021e-23
Identity = 77/253 (30.43%), Postives = 127/253 (50.20%), Query Frame = 3
Query:   15 VGALQKELIRFLNAGIFGNGTESSHTLPHSTTRAAMLVRVNTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKATGPNGEIIDAQEASKQAGFGFFELQPKEGLALVNGTAVGSGLASMVLFEANNLALLSEILSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYVNAAKKLHEIDPLQKPKQDRYALRTSPQWLGPQIEVIRFATKSIEREIN 773
            V  LQ+ LI     G+          L  +  R  M +++ +L +G SG+R E++  I  +L   + P +P +G++ ASGDL PL+++   + G   +      GE +   +A  +AG     L  KEGLAL+NGT   + LA   LF A+  A  + I  A+  +   G         H+L+ H GQI+A   +  +L+GS    A ++ H ++  Q+  QD Y +R  PQ  G  ++++R A +++E E N
Sbjct:   72 VATLQRNLILSHCCGV-------GEPLSENIVRLIMALKLVSLGRGASGVRLEVITLIEAMLEKGVIPMIPEKGSVGASGDLAPLAHMTAAMIGEGEAFY---RGERLSGAKALGKAGLKPVVLAAKEGLALINGTQTSTALALAGLFRAHRAARTALITGALSTDAAMGSDAPFHEEIHQLRGHKGQIDAGRALRTLLEGS----AIRRSH-LEGDQR-VQDPYCIRCQPQVDGACLDILRQAARTLEIEAN 308          
BLAST of CF832012 vs. ExPASy Swiss-Prot
Match: HUTH1_FUSNN (Histidine ammonia-lyase 1 OS=Fusobacterium nucleatum subsp. nucleatum GN=hutH1 PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.333e-23
Identity = 78/253 (30.83%), Postives = 132/253 (52.17%), Query Frame = 3
Query:   18 GALQKELIRFLNAGIFGNGTESSHTLPHSTTRAAMLVRVNTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKATGPNGEIIDAQEASKQAGF-GFFELQPKEGLALVNGTAVGSGLASMVLFEANNLALLSEILSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYVNAAKKLHEIDPLQKPKQDRYALRTSPQWLGPQIEVIRFATKSIEREIN 773
            G LQK ++   +  +        + LP    +  +L+R   L +GYSG R  ++E + +LLN ++TP +P +G++ +SGDL PL++++ +L G   +      GE+++A++A  +A       L  KEGLAL NGT   +   + VL++A NL+   +I +++  E + G  +  D    +++ H GQI  A  M +IL GS   N  K+  E        QD Y LR  PQ  G   + + +  + +E E+N
Sbjct:   78 GQLQKNIVMSHSCNV-------GNPLPIDIAKGIVLLRAVNLAKGYSGARRIVIEKLVELLNKDVTPWIPEKGSVGSSGDLSPLAHMSLVLIGLGKAYY---KGELLEAKDALAKADIEPIPALSSKEGLALTNGTQALTSTGAHVLYDAINLSKHLDIAASLTMEGLHGIIDAYDPRIGEVRGHLGQINTAKNMRNILAGSK--NVTKQGVE------RVQDSYVLRCIPQIHGASKDTLEYVKQKVELELN 312          
The following BLAST results are available for this feature:
BLAST of CF832012 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 251
Match NameE-valueIdentityDescription
HUTH_AGRRK3.509e-2430.35Histidine ammonia-lyase OS=Agrobacterium radiobact... [more]
HUTH_STRGR4.583e-2431.37Histidine ammonia-lyase OS=Streptomyces griseus GN... [more]
HUTH_MESSB4.583e-2429.57Histidine ammonia-lyase OS=Mesorhizobium sp. (stra... [more]
HUTH_STRAW5.985e-2431.73Histidine ammonia-lyase OS=Streptomyces avermitili... [more]
HUTH_RHILO5.985e-2430.40Histidine ammonia-lyase OS=Rhizobium loti GN=hutH ... [more]
HUTH_BRASB7.817e-2432.03Histidine ammonia-lyase OS=Bradyrhizobium sp. (str... [more]
HUTH_BRUAB1.021e-2330.43Histidine ammonia-lyase OS=Brucella abortus GN=hut... [more]
HUTH_BRUA21.021e-2330.43Histidine ammonia-lyase OS=Brucella abortus (strai... [more]
HUTH_BRUA11.021e-2330.43Histidine ammonia-lyase OS=Brucella abortus (strai... [more]
HUTH1_FUSNN1.333e-2330.83Histidine ammonia-lyase 1 OS=Fusobacterium nucleat... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_01C18_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01C18, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832012 ID=CF832012; Name=CF832012; organism=Citrus sinensis; type=EST; length=774bp
GGAGAACCAAGACCGTCGGTGCTCTTCAGAAGGAGCTCATTAGATTTTTG
AACGCTGGAATCTTTGGAAACGGAACAGAGTCATCTCACACGCTACCTCA
CTCAACAACAAGGGCAGCCATGCTTGTGAGGGTTAACACTCTTCTCCAGG
GCTACTCTGGCATCCGATTTGAAATCCTGGAAGCGATCACAAAGCTGCTC
AATCACAACATCACTCCATGCCTCCCTCTTCGCGGCACAATCACTGCTTC
AGGGGATCTGGTTCCTCTTTCCTACATTGCCGGACTGCTCACCGGCCGGC
CCAATTCTAAGGCCACCGGGCCTAATGGAGAGATCATTGATGCCCAGGAA
GCCTCTAAACAAGCGGGTTTCGGGTTCTTTGAGTTGCAGCCTAAGGAGGG
TCTTGCTCTTGTCAATGGCACTGCTGTTGGTTCTGGCCTGGCTTCTATGG
TTCTGTTTGAGGCTAACAACCTTGCTCTGTTATCAGAAATTTTGTCAGCT
ATTTTTGCTGAAGTCATGCAAGGCAAACCTGAGTTCACTGATCACTTGAC
ACACAAATTGAAGCACCATCCTGGCCAAATTGAGGCTGCTGCTATAATGG
AACATATCCTCGATGGCAGCTCTTATGTTAACGCGGCTAAGAAGTTGCAT
GAGATTGATCCTCTGCAGAAGCCGAAACAGGATCGTTATGCCCTGAGAAC
TTCACCACAATGGCTCGGCCCTCAGATCGAAGTGATTCGGTTTGCAACCA
AGTCTATTGAACGGGAGATCAACT
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