CF832012

Overview
NameCF832012
Unique NameCF832012
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length774
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9654 contig Csv1_Contig9654:145..918. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF832012 vs. ExPASy Swiss-Prot
Match: PAL2_ORYSI (Phenylalanine ammonia-lyase OS=Oryza sativa subsp. indica GN=ZB8 PE=3 SV=1)

HSP 1 Score: 404.445 bits (1038), Expect = 3.420e-112
Identity = 208/259 (80.31%), Postives = 226/259 (87.26%), Query Frame = 3
Query:    3 RTKTVGALQKELIRFLNAGIFGNGTESSHTLPHSTTRAAMLVRVNTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKATGPNGEIIDAQEASKQAGF--GFFELQPKEGLALVNGTAVGSGLASMVLFEANNLALLSEILSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYVNAAKKLHEIDPLQKPKQDRYALRTSPQWLGPQIEVIRFATKSIEREIN 773
            RTK  GALQ+ELIRFLNAG FG GT+  H LP   TRAAMLVR+NTLLQGYSGIRFEILEAI KLLN N+TPCLPLRGTITASGDLVPLSYIAGL+TGR N+ A  P+G  ++A EA K AG   GFFELQPKEGLA+VNGTAVGSGLAS VLFEAN LA+L+E+LSA+F EVM GKPE+TDHLTHKLKHHPGQIEAAAIMEHIL+GSSY+  AKKL E+DPL KPKQDRYALRTSPQWLGPQIEVIR ATKSIEREIN
Sbjct:  119 RTKEGGALQRELIRFLNAGAFGTGTDG-HVLPAEATRAAMLVRINTLLQGYSGIRFEILEAIAKLLNANVTPCLPLRGTITASGDLVPLSYIAGLVTGRENAVAVAPDGSKVNAAEAFKIAGIQGGFFELQPKEGLAMVNGTAVGSGLASTVLFEANILAILAEVLSAVFCEVMNGKPEYTDHLTHKLKHHPGQIEAAAIMEHILEGSSYMKHAKKLGELDPLMKPKQDRYALRTSPQWLGPQIEVIRAATKSIEREIN 376          
BLAST of CF832012 vs. ExPASy Swiss-Prot
Match: PAL3_PHAVU (Phenylalanine ammonia-lyase class 3 OS=Phaseolus vulgaris PE=3 SV=1)

HSP 1 Score: 399.823 bits (1026), Expect = 8.425e-111
Identity = 207/253 (81.82%), Postives = 226/253 (89.33%), Query Frame = 3
Query:   21 ALQKELIRFLNAGIFGNGTESSHTLPHSTTRAAMLVRVNTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKATGPNGEIIDAQEASKQAGF--GFFELQPKEGLALVNGTAVGSGLASMVLFEANNLALLSEILSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYVNAAKKLHEIDPLQKPKQDRYALRTSPQWLGPQIEVIRFATKSIEREIN 773
            ALQKE++RFLN  IFG  TE SHTLP S TRAAMLVRVNTLLQGYSGIRFEILEAITKLLNHN+TP LPLRGTITASGDL+PLSYIA LL GR NSKA GP+GE ++A+EA   AG   GFFEL+PKEGLALVNGTAVGSG+ASMVLFEAN LALL+E+LSA+FAEVMQGKPEFTDHL HKLK+HPGQIEAAAIMEHILDGSSYV  A KL + DPLQKP++DRYAL TSPQWLGPQIE+IRF+TKSIEREIN
Sbjct:  123 ALQKEMVRFLNCAIFGYQTELSHTLPKSATRAAMLVRVNTLLQGYSGIRFEILEAITKLLNHNVTPILPLRGTITASGDLIPLSYIAALLIGRRNSKAVGPSGESLNAKEAFHLAGVDGGFFELKPKEGLALVNGTAVGSGVASMVLFEANILALLAEVLSAVFAEVMQGKPEFTDHLIHKLKYHPGQIEAAAIMEHILDGSSYVKNA-KLQQPDPLQKPRKDRYALVTSPQWLGPQIEIIRFSTKSIEREIN 374          
BLAST of CF832012 vs. ExPASy Swiss-Prot
Match: PAL3_ARATH (Phenylalanine ammonia-lyase 3 OS=Arabidopsis thaliana GN=PAL3 PE=1 SV=3)

HSP 1 Score: 393.275 bits (1009), Expect = 7.885e-109
Identity = 207/261 (79.31%), Postives = 221/261 (84.67%), Query Frame = 3
Query:    3 RTKTVGALQKELIRFLNAGIFGNGTES---SHTLPHSTTRAAMLVRVNTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKATGPNGEIIDAQEASKQAGFG-FFELQPKEGLALVNGTAVGSGLASMVLFEANNLALLSEILSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYVNAAKKLHEIDPLQKPKQDRYALRTSPQWLGPQIEVIRFATKSIEREIN 773
            RT    ALQKELIR+LNAGIF  G E    S+TLP   TRAAML+RVNTLLQGYSGIRFEILEAIT LLN  ITP LPLRGTITASGDLVPLSYIAG L GRPNS++ GP+GEI+ A EA K AG   FFEL+PKEGLALVNGTAVGS LAS VL++AN L + SE+ SA+FAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYV  A  LH+IDPLQKPKQDRYALRTSPQWLGPQIEVIR ATK IEREIN
Sbjct:  107 RTDQGAALQKELIRYLNAGIFATGNEDDDRSNTLPRPATRAAMLIRVNTLLQGYSGIRFEILEAITTLLNCKITPLLPLRGTITASGDLVPLSYIAGFLIGRPNSRSVGPSGEILTALEAFKLAGVSSFFELRPKEGLALVNGTAVGSALASTVLYDANILVVFSEVASAMFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYVKEALHLHKIDPLQKPKQDRYALRTSPQWLGPQIEVIRAATKMIEREIN 367          
BLAST of CF832012 vs. ExPASy Swiss-Prot
Match: PAL1_ORYSJ (Phenylalanine ammonia-lyase OS=Oryza sativa subsp. japonica GN=PAL PE=1 SV=2)

HSP 1 Score: 389.037 bits (998), Expect = 1.487e-107
Identity = 198/259 (76.45%), Postives = 224/259 (86.49%), Query Frame = 3
Query:    3 RTKTVGALQKELIRFLNAGIFGNGTESSHTLPHSTTRAAMLVRVNTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKATGPNGEIIDAQEASKQAGF--GFFELQPKEGLALVNGTAVGSGLASMVLFEANNLALLSEILSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYVNAAKKLHEIDPLQKPKQDRYALRTSPQWLGPQIEVIRFATKSIEREIN 773
            RTK   ALQ EL+R LNAGIFG G++  HTLP  T RAAMLVR+NTLLQGYSGIRFEILEAITKLLN  +TPCLPLRGTITASGDLVPLSYIAGL+TGRPN++A  P+G  +DA EA K AG   GFF L PKEGLA+VNGT+VGS LA+ V+F+AN LA+LSE+LSA+F EVM GKPE+TDHLTHKLKHHPG IEAAAIMEHIL GSS+++ AKK++E+DPL KPKQDRYALRTSPQWLGPQIEVIR ATKSIERE+N
Sbjct:  109 RTKDGPALQVELLRHLNAGIFGTGSDG-HTLPSETVRAAMLVRINTLLQGYSGIRFEILEAITKLLNTGVTPCLPLRGTITASGDLVPLSYIAGLITGRPNAQAISPDGRKVDAAEAFKLAGIEGGFFTLNPKEGLAIVNGTSVGSALAATVMFDANILAVLSEVLSAVFCEVMNGKPEYTDHLTHKLKHHPGSIEAAAIMEHILAGSSFMSHAKKVNEMDPLLKPKQDRYALRTSPQWLGPQIEVIRAATKSIEREVN 366          
BLAST of CF832012 vs. ExPASy Swiss-Prot
Match: PALY_PINTA (Phenylalanine ammonia-lyase OS=Pinus taeda GN=PAL PE=3 SV=1)

HSP 1 Score: 349.362 bits (895), Expect = 1.306e-95
Identity = 182/258 (70.54%), Postives = 209/258 (81.01%), Query Frame = 3
Query:    3 RTKTVGALQKELIRFLNAGIFGNGTESSHTLPHSTTRAAMLVRVNTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKATGPNGEIIDAQEASKQAGFGF-FELQPKEGLALVNGTAVGSGLASMVLFEANNLALLSEILSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYVNAAKKLHEIDPLQKPKQDRYALRTSPQWLGPQIEVIRFATKSIEREIN 773
            RT     LQKELIRFLNAG+ G   E+   L   TTRAAMLVR NTLLQGYSG+R++ILE + KLLN  +TP LPLRGTITASGDLVPLSYIAGLLTGRPNS+    +G  +   EA K+ G    FELQPKEGLA+VNGT+VG+ LAS+V F+AN LALLSE++SA+F EVM GKPEFTD LTHKLKHHPGQ+EAAAIME++LDGSSY+  A KLHE++PLQKPKQDRY LRTSPQWLGPQ+E+IR AT  IEREIN
Sbjct:  127 RTNQGAELQKELIRFLNAGVLGKCPEN--VLSEDTTRAAMLVRTNTLLQGYSGVRWDILETVEKLLNAWLTPKLPLRGTITASGDLVPLSYIAGLLTGRPNSRVRSRDGIEMSGAEALKKVGLEKPFELQPKEGLAIVNGTSVGAALASIVCFDANVLALLSEVISAMFCEVMNGKPEFTDPLTHKLKHHPGQMEAAAIMEYVLDGSSYMKHAAKLHEMNPLQKPKQDRYGLRTSPQWLGPQVEIIRSATHMIEREIN 382          
BLAST of CF832012 vs. ExPASy Swiss-Prot
Match: PAL1_PHAVU (Phenylalanine ammonia-lyase class 1 (Fragment) OS=Phaseolus vulgaris PE=2 SV=2)

HSP 1 Score: 281.182 bits (718), Expect = 4.367e-75
Identity = 141/169 (83.43%), Postives = 155/169 (91.72%), Query Frame = 3
Query:  273 YIAGLLTGRPNSKATGPNGEIIDAQEASKQAGFG--FFELQPKEGLALVNGTAVGSGLASMVLFEANNLALLSEILSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYVNAAKKLHEIDPLQKPKQDRYALRTSPQWLGPQIEVIRFATKSIEREIN 773
            YIAGLLTGRPNSKA GP+G ++ A++A + A     F+ELQPKEGLALVNGTAVGSG+AS+VLF+AN LA+LSE+LSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSY+  AKKLHEIDPLQKPKQDRYALRTSPQWLGP IEVIRF+TKSIEREIN
Sbjct:    1 YIAGLLTGRPNSKAVGPSGVVLTAKQAFELANINSEFYELQPKEGLALVNGTAVGSGMASIVLFDANILAVLSEVLSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYMKDAKKLHEIDPLQKPKQDRYALRTSPQWLGPLIEVIRFSTKSIEREIN 169          
BLAST of CF832012 vs. ExPASy Swiss-Prot
Match: PALY_RHORB (Phenylalanine ammonia-lyase OS=Rhodotorula rubra GN=PAL PE=3 SV=2)

HSP 1 Score: 182.956 bits (463), Expect = 1.619e-45
Identity = 113/253 (44.66%), Postives = 152/253 (60.08%), Query Frame = 3
Query:    3 RTKTVGALQKELIRFLNAGIF---------GNGTESSHTLPHSTTRAAMLVRVNTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKATGPNGEIIDAQEASKQAGFGFFELQPKEGLALVNGTAVGSGLASMVLFEANNLALLSEILSAIFAEVMQGKP-EFTDHLTHKLKHHPGQIEAAAIMEHILDGSSY-VNAAKKLHEIDPLQKPKQDRYALRTSPQWLGPQI 728
            RT+   +LQK L+     G+          G G E+S  LP    R AM +RVN+L +G+S +R  +LEA+T  LNH ITP +PLRGTI+ASGDL PLSYIA  +TG P+SK    +G+I+ AQEA    G     L PKEGL LVNGTAV + +A++ L +A+ L+LL++ L+A+  E M G    F   L    + HP QIE A  +  +L+GS Y V+   ++   D     +QDRY LR SPQWLGP +
Sbjct:  129 RTEDAISLQKALLEHQLCGVLPTSMDGFALGRGLENS--LPLEVVRGAMTIRVNSLTRGHSAVRIVVLEALTNFLNHGITPIVPLRGTISASGDLSPLSYIAASITGHPDSK-VHVDGKIMSAQEAIALKGLQPVVLGPKEGLGLVNGTAVSASMATLALTDAHVLSLLAQALTALTVEAMVGHAGSFHPFLHDVTRPHPTQIEVARNIRTLLEGSKYAVHHETEVKVKDDEGILRQDRYPLRCSPQWLGPLV 378          
BLAST of CF832012 vs. ExPASy Swiss-Prot
Match: PALY_RHOTO (Phenylalanine ammonia-lyase OS=Rhodosporidium toruloides GN=PAL PE=1 SV=2)

HSP 1 Score: 175.252 bits (443), Expect = 3.375e-43
Identity = 110/256 (42.97%), Postives = 151/256 (58.98%), Query Frame = 3
Query:    3 RTKTVGALQKELIRFLNAGIF---------GNGTESSHTLPHSTTRAAMLVRVNTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSK---ATGPNGEIIDAQEASKQAGFGFFELQPKEGLALVNGTAVGSGLASMVLFEANNLALLSEILSAIFAEVMQGKP-EFTDHLTHKLKHHPGQIEAAAIMEHILDGSSY-VNAAKKLHEIDPLQKPKQDRYALRTSPQWLGPQI 728
            RT+   +LQK L+     G+          G G E+S  LP    R AM +RVN+L +G+S +R  +LEA+T  LNH ITP +PLRGTI+ASGDL PLSYIA  ++G P+SK         +I+ A+EA          L PKEGL LVNGTAV + +A++ L +A+ L+LLS+ L+A+  E M G    F   L    + HP QIE A  +  +L+GS + V+  +++   D     +QDRY LRTSPQWLGP +
Sbjct:  123 RTEDAISLQKALLEHQLCGVLPSSFDSFRLGRGLENS--LPLEVVRGAMTIRVNSLTRGHSAVRLVVLEALTNFLNHGITPIVPLRGTISASGDLSPLSYIAAAISGHPDSKVHVVHEGKEKILYAREAMALFNLEPVVLGPKEGLGLVNGTAVSASMATLALHDAHMLSLLSQSLTAMTVEAMVGHAGSFHPFLHDVTRPHPTQIEVAGNIRKLLEGSRFAVHHEEEVKVKDDEGILRQDRYPLRTSPQWLGPLV 376          
BLAST of CF832012 vs. ExPASy Swiss-Prot
Match: PALY_AMAMU (Phenylalanine ammonia-lyase OS=Amanita muscaria GN=PAL PE=2 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 3.269e-38
Identity = 100/265 (37.74%), Postives = 158/265 (59.62%), Query Frame = 3
Query:   36 LIRFLNAGIFGNGTE----------SSHTLPHSTTRAAMLVRVNTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKA-TGPNGEIIDAQEASKQA----GFGFFELQPKEGLALVNGTAVGSGLASMVLFEANNLALLSEILSAIFAEVMQG-KPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYVNAAKKLHEI---DPLQKPKQDRYALRTSPQWLGPQIEVIRFATKSIEREIN 773
            L++  + GI    TE          ++ ++P +  R A+L+R+N+L++G+SGIR+E++E + +LL  N+ P +PLRG+I++SGDL PLSYIAG + G P+ K   GP+   I    +SK          F L+ KE L ++NGTA  + +A++ L EA +L LL+++ +A+  E + G +      +    + HPGQ+E A  + ++LDGS    A  + HE+   D     +QDRY LRTSPQ+LGPQIE I  A +++ +E N
Sbjct:  144 LLQHQHVGILPTSTEPLDVLPLQDANNTSMPEAWIRGAILIRMNSLIRGHSGIRWELIEKMRELLAANVIPVVPLRGSISSSGDLSPLSYIAGTIIGNPSIKVYHGPSKSGIRQIGSSKDVLALHNIEPFPLESKEPLGILNGTAFSASVAALALNEAIHLVLLAQVCTAMGTEALIGTRASHAPFIHATARPHPGQVECAENIWNLLDGSKL--AQLEEHEVRLEDDKYTLRQDRYPLRTSPQFLGPQIEDIISAFQTVTQECN 406          
BLAST of CF832012 vs. ExPASy Swiss-Prot
Match: PALY_USTMA (Phenylalanine ammonia-lyase OS=Ustilago maydis GN=PAL1 PE=3 SV=2)

HSP 1 Score: 158.303 bits (399), Expect = 4.269e-38
Identity = 90/242 (37.19%), Postives = 148/242 (61.16%), Query Frame = 3
Query:   75 TESSHTLPHSTTRAAMLVRVNTLLQGYSGIRFEILEAITKL-LNHNITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKATGPNGE----IIDAQEASKQAGFGFFELQPKEGLALVNGTAVGSGLASMVLFEANNLALLSEILSAIFAEVMQGKPEFTDHLTHKL-KHHPGQIEAAAIMEHILDGS---SYVNAAKKLHEIDPLQKPKQDRYALRTSPQWLGPQIEVIRFATKSIEREIN 773
            TESS  +P +  R A++VR+++L++G+SG+R+E+L+ + KL L +N+TP +P+R +I+ASGDL PLSY+AG L G+        +G      + A EA +       + +PKE L L+NGTA  + +A +  +EA NLA L+++ +A+  E ++G         H++ + HPGQI++A  +  +L GS    ++   K +   +     +QDRY LRT+ QW+GP +E I  A +S++ EIN
Sbjct:  147 TESSLIMPEAWVRGAIVVRLSSLMRGHSGVRWEVLDKMQKLFLQNNVTPVVPVRSSISASGDLSPLSYVAGALAGQRGIYCFVTDGRGQRVKVTADEACRMHKITPVQYEPKEALGLLNGTAFSASVAGLATYEAENLASLTQLTTAMAVEALKGTDASFAPFIHEIARPHPGQIKSAKFIRALLSGSRLAEHLENEKHVLFSEDNGTLRQDRYTLRTASQWVGPGLEDIENAKRSVDIEIN 388          
The following BLAST results are available for this feature:
BLAST of CF832012 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 251
Match NameE-valueIdentityDescription
PAL2_ORYSI3.420e-11280.31Phenylalanine ammonia-lyase OS=Oryza sativa subsp.... [more]
PAL3_PHAVU8.425e-11181.82Phenylalanine ammonia-lyase class 3 OS=Phaseolus v... [more]
PAL3_ARATH7.885e-10979.31Phenylalanine ammonia-lyase 3 OS=Arabidopsis thali... [more]
PAL1_ORYSJ1.487e-10776.45Phenylalanine ammonia-lyase OS=Oryza sativa subsp.... [more]
PALY_PINTA1.306e-9570.54Phenylalanine ammonia-lyase OS=Pinus taeda GN=PAL ... [more]
PAL1_PHAVU4.367e-7583.43Phenylalanine ammonia-lyase class 1 (Fragment) OS=... [more]
PALY_RHORB1.619e-4544.66Phenylalanine ammonia-lyase OS=Rhodotorula rubra G... [more]
PALY_RHOTO3.375e-4342.97Phenylalanine ammonia-lyase OS=Rhodosporidium toru... [more]
PALY_AMAMU3.269e-3837.74Phenylalanine ammonia-lyase OS=Amanita muscaria GN... [more]
PALY_USTMA4.269e-3837.19Phenylalanine ammonia-lyase OS=Ustilago maydis GN=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_01C18_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01C18, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832012 ID=CF832012; Name=CF832012; organism=Citrus sinensis; type=EST; length=774bp
GGAGAACCAAGACCGTCGGTGCTCTTCAGAAGGAGCTCATTAGATTTTTG
AACGCTGGAATCTTTGGAAACGGAACAGAGTCATCTCACACGCTACCTCA
CTCAACAACAAGGGCAGCCATGCTTGTGAGGGTTAACACTCTTCTCCAGG
GCTACTCTGGCATCCGATTTGAAATCCTGGAAGCGATCACAAAGCTGCTC
AATCACAACATCACTCCATGCCTCCCTCTTCGCGGCACAATCACTGCTTC
AGGGGATCTGGTTCCTCTTTCCTACATTGCCGGACTGCTCACCGGCCGGC
CCAATTCTAAGGCCACCGGGCCTAATGGAGAGATCATTGATGCCCAGGAA
GCCTCTAAACAAGCGGGTTTCGGGTTCTTTGAGTTGCAGCCTAAGGAGGG
TCTTGCTCTTGTCAATGGCACTGCTGTTGGTTCTGGCCTGGCTTCTATGG
TTCTGTTTGAGGCTAACAACCTTGCTCTGTTATCAGAAATTTTGTCAGCT
ATTTTTGCTGAAGTCATGCAAGGCAAACCTGAGTTCACTGATCACTTGAC
ACACAAATTGAAGCACCATCCTGGCCAAATTGAGGCTGCTGCTATAATGG
AACATATCCTCGATGGCAGCTCTTATGTTAACGCGGCTAAGAAGTTGCAT
GAGATTGATCCTCTGCAGAAGCCGAAACAGGATCGTTATGCCCTGAGAAC
TTCACCACAATGGCTCGGCCCTCAGATCGAAGTGATTCGGTTTGCAACCA
AGTCTATTGAACGGGAGATCAACT
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