CF832012

Overview
NameCF832012
Unique NameCF832012
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length774
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9654 contig Csv1_Contig9654:145..918. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF832012 vs. ExPASy Swiss-Prot
Match: PALY_VITVI (Phenylalanine ammonia-lyase (Fragment) OS=Vitis vinifera GN=PAL PE=2 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 1.794e-36
Identity = 73/79 (92.41%), Postives = 75/79 (94.94%), Query Frame = 3
Query:  537 TDHLTHKLKHHPGQIEAAAIMEHILDGSSYVNAAKKLHEIDPLQKPKQDRYALRTSPQWLGPQIEVIRFATKSIEREIN 773
            TDHLTHKLKHHPGQIEAAAIMEHILDGSSYV  AKKLHE+DPLQKPKQDRYALRTSPQWLGP IEVIR +TKSIEREIN
Sbjct:    1 TDHLTHKLKHHPGQIEAAAIMEHILDGSSYVKEAKKLHEMDPLQKPKQDRYALRTSPQWLGPHIEVIRASTKSIEREIN 79          
BLAST of CF832012 vs. ExPASy Swiss-Prot
Match: HUTH_VIBCH (Histidine ammonia-lyase OS=Vibrio cholerae GN=hutH PE=3 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 1.679e-34
Identity = 90/250 (36.00%), Postives = 137/250 (54.80%), Query Frame = 3
Query:   24 LQKELIRFLNAGIFGNGTESSHTLPHSTTRAAMLVRVNTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKATGPNGEIIDAQEASKQAGFGFFELQPKEGLALVNGTAVGSGLASMVLFEANNLALLSEILSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYVNAAKKLHEIDPLQKPKQDRYALRTSPQWLGPQIEVIRFATKSIEREIN 773
            LQK ++    AGI          +   T R  ML+++N+L +GYSGIR E+++A+ +L+N+ I PC+P +G++ ASGDL PL++++ +L G   ++    NG+II   EA K AG     L PKEGLAL+NGT   +  A   LF A +L   + +  A+  E   G     D   H+++ H  Q++AA    H+LD SS +  +    E        QD Y+LR  PQ +G  ++ IR A + +E E N
Sbjct:   76 LQKSIVLSHAAGI-------GELMSDETVRLMMLLKINSLARGYSGIRLEVIQALIELVNNQIYPCVPKKGSVGASGDLAPLAHMSTVLLGEGQARY---NGKIISGLEAMKIAGLEPITLAPKEGLALLNGTQASTAFALEGLFVAEDLFASATVCGAMSVEAALGSRRPFDPRIHRVRGHRTQMDAATAYRHLLDVSSEIGQSHSNCE------KVQDPYSLRCQPQVMGACLQQIRSAAEVLEVEAN 309          
BLAST of CF832012 vs. ExPASy Swiss-Prot
Match: HUTH_IDILO (Histidine ammonia-lyase OS=Idiomarina loihiensis GN=hutH PE=3 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 2.052e-32
Identity = 81/238 (34.03%), Postives = 131/238 (55.04%), Query Frame = 3
Query:   60 IFGNGTESSHTLPHSTTRAAMLVRVNTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKATGPNGEIIDAQEASKQAGFGFFELQPKEGLALVNGTAVGSGLASMVLFEANNLALLSEILSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYVNAAKKLHEIDPLQKPKQDRYALRTSPQWLGPQIEVIRFATKSIEREIN 773
            +  +   +   +  S  R  +L+++N+L +G+SG+R  +++A+ KLLN  + PC+P +G++ ASGDL PL+++   L G    +    NG++++A+E  K AG   FEL PKEGLAL+NGT   + LA   LF        + ++ A   E   G     D   H ++  PGQI+AA ++ H+L  SS +  AK     + +Q P    Y+LR  PQ +G  ++ I  A+  + RE N
Sbjct:   81 VLSHAAGTGDLMEDSVVRLMLLLKINSLSRGFSGVRQVLVDALIKLLNAEVYPCIPEKGSVGASGDLAPLAHMVLPLVGEGTVRH---NGKVLNAEEGLKIAGIEPFELAPKEGLALLNGTQASTALALAGLFRIERNFHAAIVVGATSVEAAMGSRAPFDERVHAVRGQPGQIKAAEMLRHVLTDSSEI--AKDHENCEKVQDP----YSLRCQPQVMGAVLDQIEHASGILVREAN 309          
BLAST of CF832012 vs. ExPASy Swiss-Prot
Match: HUTH_LEGPA (Histidine ammonia-lyase OS=Legionella pneumophila (strain Paris) GN=hutH PE=3 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 2.680e-32
Identity = 81/248 (32.66%), Postives = 134/248 (54.03%), Query Frame = 3
Query:   30 KELIRFLNAGIFGNGTESSHTLPHSTTRAAMLVRVNTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKATGPNGEIIDAQEASKQAGFGFFELQPKEGLALVNGTAVGSGLASMVLFEANNLALLSEILSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYVNAAKKLHEIDPLQKPKQDRYALRTSPQWLGPQIEVIRFATKSIEREIN 773
            KEL R +   +  +   +   LP S     +L+++N L QGYSG+R E++ A+  L NH + PC+P +G++ ASGDLVPL++++  L G    +     G++I A+E  K AG    EL+ KEGLAL+NG  V + LA   LF +  L   + I  ++  +   G     D   H+++ H  QI AA++  ++L GS    + +  + +       QD Y+LR  PQ +G  +  ++F  ++++ E N
Sbjct:   75 KELQRNI---VLSHACGTGKLLPDSVVALILLLKINNLSQGYSGVRLELINALIALFNHKVYPCIPSKGSVGASGDLVPLAHLSLPLLGEGEVR---HQGQVISAEEGLKLAGLKPLELEAKEGLALLNGLQVSTALALSALFISETLFETAIISGSLSVDAASGSDVPFDDRIHQIRGHQAQISAASMYRNLLAGSQIRESHRHCNRV-------QDPYSLRCQPQIMGAVLHQMQFVGQTLQVEAN 309          
BLAST of CF832012 vs. ExPASy Swiss-Prot
Match: HUTH_LEGPH (Histidine ammonia-lyase OS=Legionella pneumophila subsp. pneumophila (strain Philadelphia 1 / ATCC 33152 / DSM 7513) GN=hutH PE=3 SV=2)

HSP 1 Score: 137.117 bits (344), Expect = 1.019e-31
Identity = 80/248 (32.26%), Postives = 133/248 (53.63%), Query Frame = 3
Query:   30 KELIRFLNAGIFGNGTESSHTLPHSTTRAAMLVRVNTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKATGPNGEIIDAQEASKQAGFGFFELQPKEGLALVNGTAVGSGLASMVLFEANNLALLSEILSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYVNAAKKLHEIDPLQKPKQDRYALRTSPQWLGPQIEVIRFATKSIEREIN 773
            KEL R +   +  +   +   LP       +L+++N L QGYSG+R E++ A+  L NH + PC+P +G++ ASGDLVPL++++  L G    +     G++I A+E  K AG    EL+ KEGLAL+NG  V + LA   LF +  L   + I  ++  +   G     D   H+++ H  QI AA++  ++L GS    + +  + +       QD Y+LR  PQ +G  +  ++F  ++++ E N
Sbjct:   75 KELQRNI---VLSHACGTGKLLPDDVVALILLLKINNLSQGYSGVRLELINALIALFNHKVYPCIPSKGSVGASGDLVPLAHLSLPLLGEGEVR---HQGQVISAEEGLKLAGLKPLELEAKEGLALLNGLQVSTALALSALFISETLFETAIISGSLSVDAASGSDVPFDDRIHQIRGHQAQISAASMYRNLLAGSQIRESHRHCNRV-------QDPYSLRCQPQIMGAILHQMQFVGQTLQVEAN 309          
BLAST of CF832012 vs. ExPASy Swiss-Prot
Match: HUTH_LEGPL (Histidine ammonia-lyase OS=Legionella pneumophila (strain Lens) GN=hutH PE=3 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 2.269e-31
Identity = 80/248 (32.26%), Postives = 132/248 (53.23%), Query Frame = 3
Query:   30 KELIRFLNAGIFGNGTESSHTLPHSTTRAAMLVRVNTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKATGPNGEIIDAQEASKQAGFGFFELQPKEGLALVNGTAVGSGLASMVLFEANNLALLSEILSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYVNAAKKLHEIDPLQKPKQDRYALRTSPQWLGPQIEVIRFATKSIEREIN 773
            KEL R +   +  +   +   LP       +L+++N L QGYSG+R E++ A+  L NH + PC+P +G++ ASGDLVPL++++  L G    +     G++I A+E  K AG    EL+ KEGLAL+NG  V + LA   LF +  L   + I  ++  +   G     D   H+ + H  QI AA++  ++L GS    + +  + +       QD Y+LR  PQ +G  +  ++F  ++++ E N
Sbjct:   75 KELQRNI---VLSHACGTGKLLPDDVVALILLLKINNLSQGYSGVRLELINALIALFNHKVYPCIPSKGSVGASGDLVPLAHLSLPLLGEGEVR---HQGQLISAEEGLKLAGLKPLELEAKEGLALLNGLQVSTALALSALFISETLFETAIISGSLSVDAASGSDVPFDDRIHQTRGHQAQISAASMYRNLLAGSQIRESHRHCNRV-------QDPYSLRCQPQIMGAVLHQMQFVGQTLQVEAN 309          
BLAST of CF832012 vs. ExPASy Swiss-Prot
Match: HUTH_LEGPC (Histidine ammonia-lyase OS=Legionella pneumophila (strain Corby) GN=hutH PE=3 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 2.269e-31
Identity = 80/248 (32.26%), Postives = 131/248 (52.82%), Query Frame = 3
Query:   30 KELIRFLNAGIFGNGTESSHTLPHSTTRAAMLVRVNTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKATGPNGEIIDAQEASKQAGFGFFELQPKEGLALVNGTAVGSGLASMVLFEANNLALLSEILSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYVNAAKKLHEIDPLQKPKQDRYALRTSPQWLGPQIEVIRFATKSIEREIN 773
            KEL R +   +  +   +   LP       +L+++N L QGYSG+R E++ A+  L NH + PC+P +G++ ASGDLVPL++++  L G    +     G++I A+E  K AG    EL+ KEGLAL+NG  V + LA   LF +  L   + I  ++  +   G     D   H+++ H  QI AA +  ++L GS    + +  + +       QD Y+LR  PQ +G  +  + F  ++++ E N
Sbjct:   75 KELQRNI---VLSHACGTGKLLPDDVVALILLLKINNLSQGYSGVRLELINALIALFNHKVYPCIPSKGSVGASGDLVPLAHLSLPLLGEGEVR---HQGQVISAEEGLKLAGLKPLELEAKEGLALLNGLQVSTALALSALFISETLFETAIISGSLSVDAASGSDVPFDDRIHQIRGHQAQISAARMYRNLLAGSQIRESHRYCNRV-------QDPYSLRCQPQIMGAVLHQMEFVGQTLQVEAN 309          
BLAST of CF832012 vs. ExPASy Swiss-Prot
Match: HUTH_STRGC (Histidine ammonia-lyase OS=Streptococcus gordonii (strain Challis / ATCC 35105 / CH1 / DL1 / V288) GN=hutH PE=3 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 2.963e-31
Identity = 86/250 (34.40%), Postives = 134/250 (53.60%), Query Frame = 3
Query:   24 LQKELIRFLNAGIFGNGTESSHTLPHSTTRAAMLVRVNTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKATGPNGEIIDAQEASKQAGFGFFELQPKEGLALVNGTAVGSGLASMVLFEANNLALLSEILSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYVNAAKKLHEIDPLQKPKQDRYALRTSPQWLGPQIEVIRFATKSIEREIN 773
            LQ+ LIR   +G FG+       LP    RA ML+R+N+L++GYSGIR   +E + +LLN  + P +P +G++ ASGDL PL+++   + G  ++      G+++  QEA  +AG     L  KEGLAL+NGT V +G+ ++  ++A  L  LS++  A+  EV  G     +   H ++   GQ+  A  + ++L+GS     A         Q+  QD Y LR  PQ  G   + I +    +E EIN
Sbjct:   77 LQENLIRTHASG-FGD------PLPEDAVRAIMLIRINSLVKGYSGIRLSTVEKLLELLNKGVVPFIPEKGSLGASGDLAPLAHMVLPMLGLGHAYY---QGQLLSGQEALDKAGIEKIALAAKEGLALINGTTVLTGIGALATYDAIQLLKLSDVAGALSMEVHNGITSPFEEDLHTIRPQSGQLATARNIRNLLEGSGNTTVA--------TQQRVQDPYTLRCIPQIHGASKDSIAYVKTKVEIEIN 308          
BLAST of CF832012 vs. ExPASy Swiss-Prot
Match: HUTH_STRSV (Histidine ammonia-lyase OS=Streptococcus sanguinis (strain SK36) GN=hutH PE=3 SV=2)

HSP 1 Score: 135.191 bits (339), Expect = 3.870e-31
Identity = 85/250 (34.00%), Postives = 134/250 (53.60%), Query Frame = 3
Query:   24 LQKELIRFLNAGIFGNGTESSHTLPHSTTRAAMLVRVNTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKATGPNGEIIDAQEASKQAGFGFFELQPKEGLALVNGTAVGSGLASMVLFEANNLALLSEILSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYVNAAKKLHEIDPLQKPKQDRYALRTSPQWLGPQIEVIRFATKSIEREIN 773
            LQ+ LIR  ++G +G+       LP    RA ML+R+N+L++GYSGIR   +E + +LLN  + P +P +G++ ASGDL PL+++   + G   +      G+++  QEA  +AG     L  KEGLAL+NGT V +G+ ++  ++A  L  LS++  A+  EV  G     +   H ++   GQ+  A  + ++L+GS     A         Q+  QD Y LR  PQ  G   + I +    +E EIN
Sbjct:   77 LQENLIRTHSSG-YGD------PLPEDAVRAIMLIRINSLVKGYSGIRLSTVEKLLELLNKGVVPYIPEKGSLGASGDLAPLAHMVLPMLGLGRAYY---QGQLLSGQEALDKAGIEKIALAAKEGLALINGTTVLTGIGALATYDAIQLLKLSDVAGALSMEVHNGITSPFEEDLHTIRPQSGQLATARNIRNLLEGSGNTTVA--------TQQRVQDPYTLRCIPQIHGASKDSIAYVKTKVEIEIN 308          
BLAST of CF832012 vs. ExPASy Swiss-Prot
Match: HUTH_ALKOO (Histidine ammonia-lyase OS=Alkaliphilus oremlandii (strain OhILAs) GN=hutH PE=3 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 5.055e-31
Identity = 84/251 (33.47%), Postives = 130/251 (51.79%), Query Frame = 3
Query:   21 ALQKELIRFLNAGIFGNGTESSHTLPHSTTRAAMLVRVNTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKATGPNGEIIDAQEASKQAGFGFFELQPKEGLALVNGTAVGSGLASMVLFEANNLALLSEILSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYVNAAKKLHEIDPLQKPKQDRYALRTSPQWLGPQIEVIRFATKSIEREIN 773
            ALQ+ LI     G+        + L     R  ML+R N L +GYSGIR E L  + ++LN  + P +P +G++ ASGDL PLS++  +L G   +   G     +  +EA + AG     L  KEGLAL+NGT V + + ++ +++A NL+ +S+I +A+  E  +G     D   H+++ H GQI  A  +  +L+GS+Y     ++          QD Y LR  PQ  G   + I++    I  EIN
Sbjct:   75 ALQRNLIISHACGV-------GNPLEEDVVRGIMLLRANALSKGYSGIRLETLSTLIEMLNKGVHPVIPEKGSLGASGDLAPLSHMVLVLIGEGEAIYQGKR---MSGREAMEAAGIRPVVLTSKEGLALINGTQVMTAIGALTVYDAINLSKISDIAAALTIEAQRGIVTAFDKRVHEVRPHAGQISCAENLNRLLEGSTYTTKQGEI--------KVQDAYTLRCIPQIHGASKDAIQYVENKINIEIN 307          
The following BLAST results are available for this feature:
BLAST of CF832012 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 251
Match NameE-valueIdentityDescription
PALY_VITVI1.794e-3692.41Phenylalanine ammonia-lyase (Fragment) OS=Vitis vi... [more]
HUTH_VIBCH1.679e-3436.00Histidine ammonia-lyase OS=Vibrio cholerae GN=hutH... [more]
HUTH_IDILO2.052e-3234.03Histidine ammonia-lyase OS=Idiomarina loihiensis G... [more]
HUTH_LEGPA2.680e-3232.66Histidine ammonia-lyase OS=Legionella pneumophila ... [more]
HUTH_LEGPH1.019e-3132.26Histidine ammonia-lyase OS=Legionella pneumophila ... [more]
HUTH_LEGPL2.269e-3132.26Histidine ammonia-lyase OS=Legionella pneumophila ... [more]
HUTH_LEGPC2.269e-3132.26Histidine ammonia-lyase OS=Legionella pneumophila ... [more]
HUTH_STRGC2.963e-3134.40Histidine ammonia-lyase OS=Streptococcus gordonii ... [more]
HUTH_STRSV3.870e-3134.00Histidine ammonia-lyase OS=Streptococcus sanguinis... [more]
HUTH_ALKOO5.055e-3133.47Histidine ammonia-lyase OS=Alkaliphilus oremlandii... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_01C18_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01C18, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832012 ID=CF832012; Name=CF832012; organism=Citrus sinensis; type=EST; length=774bp
GGAGAACCAAGACCGTCGGTGCTCTTCAGAAGGAGCTCATTAGATTTTTG
AACGCTGGAATCTTTGGAAACGGAACAGAGTCATCTCACACGCTACCTCA
CTCAACAACAAGGGCAGCCATGCTTGTGAGGGTTAACACTCTTCTCCAGG
GCTACTCTGGCATCCGATTTGAAATCCTGGAAGCGATCACAAAGCTGCTC
AATCACAACATCACTCCATGCCTCCCTCTTCGCGGCACAATCACTGCTTC
AGGGGATCTGGTTCCTCTTTCCTACATTGCCGGACTGCTCACCGGCCGGC
CCAATTCTAAGGCCACCGGGCCTAATGGAGAGATCATTGATGCCCAGGAA
GCCTCTAAACAAGCGGGTTTCGGGTTCTTTGAGTTGCAGCCTAAGGAGGG
TCTTGCTCTTGTCAATGGCACTGCTGTTGGTTCTGGCCTGGCTTCTATGG
TTCTGTTTGAGGCTAACAACCTTGCTCTGTTATCAGAAATTTTGTCAGCT
ATTTTTGCTGAAGTCATGCAAGGCAAACCTGAGTTCACTGATCACTTGAC
ACACAAATTGAAGCACCATCCTGGCCAAATTGAGGCTGCTGCTATAATGG
AACATATCCTCGATGGCAGCTCTTATGTTAACGCGGCTAAGAAGTTGCAT
GAGATTGATCCTCTGCAGAAGCCGAAACAGGATCGTTATGCCCTGAGAAC
TTCACCACAATGGCTCGGCCCTCAGATCGAAGTGATTCGGTTTGCAACCA
AGTCTATTGAACGGGAGATCAACT
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