CF832012

Overview
NameCF832012
Unique NameCF832012
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length774
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9654 contig Csv1_Contig9654:145..918. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF832012 vs. ExPASy Swiss-Prot
Match: HUTH_SHEPA (Histidine ammonia-lyase OS=Shewanella pealeana (strain ATCC 700345 / ANG-SQ1) GN=hutH PE=3 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 8.622e-31
Identity = 81/239 (33.89%), Postives = 126/239 (52.72%), Query Frame = 3
Query:   60 IFGNGTESSHTLPHSTTRAAMLVRVNTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKATGPNGEIIDAQEASKQAGFGFFELQPKEGLALVNGTAVGSGLASMVLFEANNLALLSEILSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYVNAAKKLHEIDPLQKPK-QDRYALRTSPQWLGPQIEVIRFATKSIEREIN 773
            +  +   +   +  +T R  M++++N+L +G+SGIR E++  +  L+N  + PC+P +G++ ASGDL PLS++   L G          G++I A E  + AG    EL  KEGLAL+NGT   + LA   LF A +L   S ++ A+  E   G     D   H  +   GQI++AA+  H+L G S ++       +D +   K QD Y+LR  PQ LG  +  IR A + +  E N
Sbjct:   81 VLSHAAGTGQYMQDATVRLMMVLKINSLSRGFSGIRLEVINFLIALVNAGVYPCVPEKGSVGASGDLAPLSHMCLPLLGEGEMSY---QGQLISAAEGLEIAGLKPIELAAKEGLALLNGTQASTALALEGLFNAEDLFAASSVIGAMSVEAAMGSRSPFDPRIHAARGQKGQIDSAAVFRHLLGGESEIS-------LDHVNCEKVQDPYSLRCQPQVLGACLTQIRHAAEVLGTEAN 309          
BLAST of CF832012 vs. ExPASy Swiss-Prot
Match: HUTH_STRPZ (Histidine ammonia-lyase OS=Streptococcus pyogenes serotype M49 (strain NZ131) GN=hutH PE=3 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 1.126e-30
Identity = 85/250 (34.00%), Postives = 131/250 (52.40%), Query Frame = 3
Query:   24 LQKELIRFLNAGIFGNGTESSHTLPHSTTRAAMLVRVNTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKATGPNGEIIDAQEASKQAGFGFFELQPKEGLALVNGTAVGSGLASMVLFEANNLALLSEILSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYVNAAKKLHEIDPLQKPKQDRYALRTSPQWLGPQIEVIRFATKSIEREIN 773
            LQ+ LIR   +G FG+       LP    RA ML+R+N+L++GYSGIR   +E + +LLN  + P +P +G++ ASGDL PL+++   + G   +      GE++  QEA  +AG     L  KEGLAL+NGT V + + ++  ++A  L  LS++  A+  EV  G     +   H ++   GQ+  A  + ++L+GS     A         Q   QD Y LR  PQ  G   + I +    ++ EIN
Sbjct:   77 LQENLIRTHASG-FGD------PLPEDAVRAIMLIRINSLVKGYSGIRLSTIEKLLELLNKGVHPYIPEKGSLGASGDLAPLAHMVLPMLGLGKAYY---KGELLSGQEALDKAGIDKISLAAKEGLALINGTTVLTAIGALATYDAIQLLKLSDLAGALSLEVHNGITSPFEENLHTIRPQSGQLATARNIRNLLEGSQNTTVA--------TQSRVQDPYTLRCMPQIHGASKDSIAYVKSKVDIEIN 308          
BLAST of CF832012 vs. ExPASy Swiss-Prot
Match: HUTH_STRP8 (Histidine ammonia-lyase OS=Streptococcus pyogenes serotype M18 GN=hutH PE=3 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 1.126e-30
Identity = 85/250 (34.00%), Postives = 131/250 (52.40%), Query Frame = 3
Query:   24 LQKELIRFLNAGIFGNGTESSHTLPHSTTRAAMLVRVNTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKATGPNGEIIDAQEASKQAGFGFFELQPKEGLALVNGTAVGSGLASMVLFEANNLALLSEILSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYVNAAKKLHEIDPLQKPKQDRYALRTSPQWLGPQIEVIRFATKSIEREIN 773
            LQ+ LIR   +G FG+       LP    RA ML+R+N+L++GYSGIR   +E + +LLN  + P +P +G++ ASGDL PL+++   + G   +      GE++  QEA  +AG     L  KEGLAL+NGT V + + ++  ++A  L  LS++  A+  EV  G     +   H ++   GQ+  A  + ++L+GS     A         Q   QD Y LR  PQ  G   + I +    ++ EIN
Sbjct:   77 LQENLIRTHASG-FGD------PLPEDAVRAIMLIRINSLVKGYSGIRLSTIEKLLELLNKGVHPYIPEKGSLGASGDLAPLAHMVLPMLGLGKAYY---KGELLSGQEALDKAGIDKISLAAKEGLALINGTTVLTAIGALATYDAIQLLKLSDLAGALSLEVHNGITSPFEENLHTIRPQSGQLATARNIRNLLEGSQNTTVA--------TQSRVQDPYTLRCMPQIHGASKDSIAYVKSKVDIEIN 308          
BLAST of CF832012 vs. ExPASy Swiss-Prot
Match: HUTH_STRP6 (Histidine ammonia-lyase OS=Streptococcus pyogenes serotype M6 GN=hutH PE=3 SV=2)

HSP 1 Score: 133.265 bits (334), Expect = 1.471e-30
Identity = 85/250 (34.00%), Postives = 131/250 (52.40%), Query Frame = 3
Query:   24 LQKELIRFLNAGIFGNGTESSHTLPHSTTRAAMLVRVNTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKATGPNGEIIDAQEASKQAGFGFFELQPKEGLALVNGTAVGSGLASMVLFEANNLALLSEILSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYVNAAKKLHEIDPLQKPKQDRYALRTSPQWLGPQIEVIRFATKSIEREIN 773
            LQ+ LIR   +G FG+       LP    RA ML+R+N+L++GYSGIR   +E + +LLN  + P +P +G++ ASGDL PL+++   + G   +      GE++  QEA  +AG     L  KEGLAL+NGT V + + ++  ++A  L  LS++  A+  EV  G     +   H ++   GQ+  A  + ++L+GS     A         Q   QD Y LR  PQ  G   + I +    ++ EIN
Sbjct:   77 LQENLIRTHASG-FGD------PLPEDAVRAIMLIRINSLVKGYSGIRLSTIEKLLELLNKGVHPYIPEKGSLGASGDLAPLAHMVLPMLGLGKAYY---KGELLSGQEALDKAGIDKISLAAKEGLALINGTTVLTAIGALATYDAIQLLKLSDLAGALSLEVHNGITSPFEENLHTIRPQSGQLATARNIRNLLEGSQNTTVA--------TQSRVQDPYTLRCLPQIHGASKDSIAYVKSKVDIEIN 308          
BLAST of CF832012 vs. ExPASy Swiss-Prot
Match: HUTH_STRP1 (Histidine ammonia-lyase OS=Streptococcus pyogenes serotype M1 GN=hutH PE=3 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 1.471e-30
Identity = 85/250 (34.00%), Postives = 131/250 (52.40%), Query Frame = 3
Query:   24 LQKELIRFLNAGIFGNGTESSHTLPHSTTRAAMLVRVNTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKATGPNGEIIDAQEASKQAGFGFFELQPKEGLALVNGTAVGSGLASMVLFEANNLALLSEILSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYVNAAKKLHEIDPLQKPKQDRYALRTSPQWLGPQIEVIRFATKSIEREIN 773
            LQ+ LIR   +G FG+       LP    RA ML+R+N+L++GYSGIR   +E + +LLN  + P +P +G++ ASGDL PL+++   + G   +      GE++  QEA  +AG     L  KEGLAL+NGT V + + ++  ++A  L  LS++  A+  EV  G     +   H ++   GQ+  A  + ++L+GS     A         Q   QD Y LR  PQ  G   + I +    ++ EIN
Sbjct:   77 LQENLIRTHASG-FGD------PLPEDAVRAIMLIRINSLVKGYSGIRLSTIEKLLELLNKGVHPYIPEKGSLGASGDLAPLAHMVLPMLGLGKAYY---KGELLSGQEALDKAGIDKISLAAKEGLALINGTTVLTAVGALATYDAIQLLKLSDLAGALSLEVHNGITSPFEENLHTIRPQSGQLATARNIRNLLEGSQNTTVA--------TQSRVQDPYTLRCMPQIHGASKDSIAYVKSKVDIEIN 308          
BLAST of CF832012 vs. ExPASy Swiss-Prot
Match: HUTH_STRPG (Histidine ammonia-lyase OS=Streptococcus pyogenes serotype M5 (strain Manfredo) GN=hutH PE=3 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 1.921e-30
Identity = 85/250 (34.00%), Postives = 130/250 (52.00%), Query Frame = 3
Query:   24 LQKELIRFLNAGIFGNGTESSHTLPHSTTRAAMLVRVNTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKATGPNGEIIDAQEASKQAGFGFFELQPKEGLALVNGTAVGSGLASMVLFEANNLALLSEILSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYVNAAKKLHEIDPLQKPKQDRYALRTSPQWLGPQIEVIRFATKSIEREIN 773
            LQ+ LIR   +G FG+       LP    RA ML+R+N+L++GYSGIR   +E + +LLN  + P +P +G++ ASGDL PL+++   + G   +      GE +  QEA  +AG     L  KEGLAL+NGT V + + ++  ++A  L  LS++  A+  EV  G     +   H ++   GQ+  A  + ++L+GS     A         Q   QD Y LR  PQ  G   + I +    ++ EIN
Sbjct:   77 LQENLIRTHASG-FGD------PLPEDAVRAIMLIRINSLVKGYSGIRLSTIEKLLELLNKGVHPYIPEKGSLGASGDLAPLAHMVLPMLGLGKAYY---KGEFLSGQEALDKAGIDKISLAAKEGLALINGTTVLTAIGALATYDAIQLLKLSDLAGALSLEVHNGITSPFEENLHTIRPQSGQLATARNIRNLLEGSQNTTVA--------TQSRVQDPYTLRCMPQIHGASKDSIAYVKSKVDIEIN 308          
BLAST of CF832012 vs. ExPASy Swiss-Prot
Match: HUTH_GLOVI (Histidine ammonia-lyase OS=Gloeobacter violaceus GN=hutH PE=3 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 3.277e-30
Identity = 86/254 (33.86%), Postives = 132/254 (51.97%), Query Frame = 3
Query:   15 VGALQKELIRFLNAGIFGNGTESSHTLPHSTTRAAMLVRVNTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKATGPNGEIIDAQEASKQAGFGFFELQPKEGLALVNGTAVGSGLASMVLFEANNLALLSEILSAIFAEVMQG-KPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYVNAAKKLHEIDPLQKPKQDRYALRTSPQWLGPQIEVIRFATKSIEREIN 773
            V  LQ+ L+    AG+                RA +L+R NTL QGYSG+R E L+ +  +LN  + P +P RG++ ASGDL PL+++A +LTG   ++     GE++    A  +AG     L  KEGLAL+NGT   S L ++ +  A  LA L+++  A+  E   G +  F  H  H+L+ HPGQ  +A  +  + + S+ + +      +       QD Y+LR +PQ  G  ++ I +A   I  EIN
Sbjct:   77 VEQLQQNLLMSSAAGL-------GEPFGREVVRAMLLLRANTLAQGYSGVRPETLQLLVAMLNRGVHPVVPCRGSVGASGDLAPLAHLALVLTGEGEAEV---GGEVLPGAAALARAGLEPIRLGAKEGLALINGTQAMSALGALTVHRAQRLAKLADLACAMTLEATLGSRSAFLPHF-HRLRPHPGQQSSARNLLVLTEDSALIASHAGCDRV-------QDAYSLRCAPQVHGASLDAISYAAGVIAIEIN 312          
BLAST of CF832012 vs. ExPASy Swiss-Prot
Match: HUTH_VIBF1 (Histidine ammonia-lyase OS=Vibrio fischeri (strain ATCC 700601 / ES114) GN=hutH PE=3 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 4.279e-30
Identity = 82/255 (32.16%), Postives = 137/255 (53.73%), Query Frame = 3
Query:    9 KTVGALQKELIRFLNAGIFGNGTESSHTLPHSTTRAAMLVRVNTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKATGPNGEIIDAQEASKQAGFGFFELQPKEGLALVNGTAVGSGLASMVLFEANNLALLSEILSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYVNAAKKLHEIDPLQKPKQDRYALRTSPQWLGPQIEVIRFATKSIEREIN 773
            K +  LQ+ ++    AGI          +  +T R  M++++N+L +GYSGIR  +++A+ +L+N  + PC+P +G++ ASGDL PL++++ +L G   ++     GE+I  + A + AG     L PKEGLAL+NGT   +  A   LF A +L   + +  A+  E   G  +  D   H+++ H  Q++AA    H+L  SS +  + +  E        QD Y+LR  PQ +G  ++ IR +   +E E N
Sbjct:   71 KDLETLQRSIVLSHAAGI-------GEFMDDATVRLMMVLKINSLARGYSGIRPLVIDALIQLVNSEVYPCIPKKGSVGASGDLAPLAHMSTVLLGEGEARY---RGEVITGKTALEIAGLTPITLAPKEGLALLNGTQASTAFALEGLFAAEDLYASATVCGAMSVEAALGSRKPFDPRIHRVRGHRSQMDAALAYRHLLAQSSDIGLSHQCCE------RVQDPYSLRCQPQVMGACLQQIRNSADILEIEAN 309          
BLAST of CF832012 vs. ExPASy Swiss-Prot
Match: HUTH_SHEWM (Histidine ammonia-lyase OS=Shewanella woodyi (strain ATCC 51908 / MS32) GN=hutH PE=3 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 4.279e-30
Identity = 81/248 (32.66%), Postives = 131/248 (52.82%), Query Frame = 3
Query:   30 KELIRFLNAGIFGNGTESSHTLPHSTTRAAMLVRVNTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKATGPNGEIIDAQEASKQAGFGFFELQPKEGLALVNGTAVGSGLASMVLFEANNLALLSEILSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYVNAAKKLHEIDPLQKPKQDRYALRTSPQWLGPQIEVIRFATKSIEREIN 773
            K+L     + +  +   +   +  +T R  M++++N+L +G+SGIR E++  + +L+N  + PC+P +G++ ASGDL PLS+++  L G          G+I+ A+E  + AG    EL  KEGLAL+NGT   + LA   LF A +L   S ++ A+  E   G     D   H  +   GQ++AA +  H+L   S ++    L  +D   +  QD Y+LR  PQ LG  +  IR A + +  E N
Sbjct:   71 KDLQLLQRSIVLSHAAGTGQYMQDATVRLMMVLKINSLSRGFSGIRLEVINFLIQLVNAEVYPCVPEKGSVGASGDLAPLSHMSLTLLGEGE---VSYKGQIMSAKEGLEIAGLEPIELAAKEGLALLNGTQASTALALEGLFNAEDLFAASSVIGAMSVEAAMGSRSPFDPRIHAARGQKGQMDAAGLFRHLLGDESEIS----LSHVD--CEKVQDPYSLRCQPQVLGACLTQIRQAAEVLGTEAN 309          
BLAST of CF832012 vs. ExPASy Swiss-Prot
Match: HUTH_KLEP3 (Histidine ammonia-lyase OS=Klebsiella pneumoniae (strain 342) GN=hutH PE=3 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 4.279e-30
Identity = 83/250 (33.20%), Postives = 133/250 (53.20%), Query Frame = 3
Query:   24 LQKELIRFLNAGIFGNGTESSHTLPHSTTRAAMLVRVNTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKATGPNGEIIDAQEASKQAGFGFFELQPKEGLALVNGTAVGSGLASMVLFEANNLALLSEILSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYVNAAKKLHEIDPLQKPKQDRYALRTSPQWLGPQIEVIRFATKSIEREIN 773
            LQ+ L+    AG+          L     R  M++++N+L +G+SGIR  +++A+  L+N  +TP +P +G++ ASGDL PL++++  L G   ++  G  GE + A +A +QAG     L  KEGLAL+NGT   +  A   LFEA +L   + +  A+  E   G     D   H+++   GQI+AAA+  H+L   S +  ++  H    +Q P    Y+LR  PQ +G  +  IR A + +  E N
Sbjct:   76 LQRSLVLSHAAGV-------GEPLDDDLARLIMVLKINSLSRGFSGIRLSVIQALIGLVNAGVTPWIPAKGSVGASGDLAPLAHMSLTLLGEGKARVRG--GEWLPATDALRQAGLEPITLAAKEGLALLNGTQASTAFALRGLFEAEDLFASAVVCGALTTEAALGSRRPFDARIHEVRGQRGQIDAAALYRHLLTDDSAI--SRSHHNCTKVQDP----YSLRCQPQVMGACLTQIRQAAEVLLAEAN 310          
The following BLAST results are available for this feature:
BLAST of CF832012 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 251
Match NameE-valueIdentityDescription
HUTH_SHEPA8.622e-3133.89Histidine ammonia-lyase OS=Shewanella pealeana (st... [more]
HUTH_STRPZ1.126e-3034.00Histidine ammonia-lyase OS=Streptococcus pyogenes ... [more]
HUTH_STRP81.126e-3034.00Histidine ammonia-lyase OS=Streptococcus pyogenes ... [more]
HUTH_STRP61.471e-3034.00Histidine ammonia-lyase OS=Streptococcus pyogenes ... [more]
HUTH_STRP11.471e-3034.00Histidine ammonia-lyase OS=Streptococcus pyogenes ... [more]
HUTH_STRPG1.921e-3034.00Histidine ammonia-lyase OS=Streptococcus pyogenes ... [more]
HUTH_GLOVI3.277e-3033.86Histidine ammonia-lyase OS=Gloeobacter violaceus G... [more]
HUTH_VIBF14.279e-3032.16Histidine ammonia-lyase OS=Vibrio fischeri (strain... [more]
HUTH_SHEWM4.279e-3032.66Histidine ammonia-lyase OS=Shewanella woodyi (stra... [more]
HUTH_KLEP34.279e-3033.20Histidine ammonia-lyase OS=Klebsiella pneumoniae (... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_01C18_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01C18, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832012 ID=CF832012; Name=CF832012; organism=Citrus sinensis; type=EST; length=774bp
GGAGAACCAAGACCGTCGGTGCTCTTCAGAAGGAGCTCATTAGATTTTTG
AACGCTGGAATCTTTGGAAACGGAACAGAGTCATCTCACACGCTACCTCA
CTCAACAACAAGGGCAGCCATGCTTGTGAGGGTTAACACTCTTCTCCAGG
GCTACTCTGGCATCCGATTTGAAATCCTGGAAGCGATCACAAAGCTGCTC
AATCACAACATCACTCCATGCCTCCCTCTTCGCGGCACAATCACTGCTTC
AGGGGATCTGGTTCCTCTTTCCTACATTGCCGGACTGCTCACCGGCCGGC
CCAATTCTAAGGCCACCGGGCCTAATGGAGAGATCATTGATGCCCAGGAA
GCCTCTAAACAAGCGGGTTTCGGGTTCTTTGAGTTGCAGCCTAAGGAGGG
TCTTGCTCTTGTCAATGGCACTGCTGTTGGTTCTGGCCTGGCTTCTATGG
TTCTGTTTGAGGCTAACAACCTTGCTCTGTTATCAGAAATTTTGTCAGCT
ATTTTTGCTGAAGTCATGCAAGGCAAACCTGAGTTCACTGATCACTTGAC
ACACAAATTGAAGCACCATCCTGGCCAAATTGAGGCTGCTGCTATAATGG
AACATATCCTCGATGGCAGCTCTTATGTTAACGCGGCTAAGAAGTTGCAT
GAGATTGATCCTCTGCAGAAGCCGAAACAGGATCGTTATGCCCTGAGAAC
TTCACCACAATGGCTCGGCCCTCAGATCGAAGTGATTCGGTTTGCAACCA
AGTCTATTGAACGGGAGATCAACT
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