CF832012

Overview
NameCF832012
Unique NameCF832012
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length774
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9654 contig Csv1_Contig9654:145..918. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF832012 vs. ExPASy Swiss-Prot
Match: HUTH_VIBFM (Histidine ammonia-lyase OS=Vibrio fischeri (strain MJ11) GN=hutH PE=3 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 3.623e-29
Identity = 81/255 (31.76%), Postives = 136/255 (53.33%), Query Frame = 3
Query:    9 KTVGALQKELIRFLNAGIFGNGTESSHTLPHSTTRAAMLVRVNTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKATGPNGEIIDAQEASKQAGFGFFELQPKEGLALVNGTAVGSGLASMVLFEANNLALLSEILSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYVNAAKKLHEIDPLQKPKQDRYALRTSPQWLGPQIEVIRFATKSIEREIN 773
            K +  LQ+ ++    AGI          +  +T R  +++++N+L +GYSGIR  +++A+ +L+N  + PC+P +G++ ASGDL PL++++ +L G   ++      +II  +EA   AG     L PKEGLAL+NGT   +  A   LF A +L   + +  A+  E   G  +  D   H+++ H  Q++AA    H+L  SS +  + +  E        QD Y+LR  PQ +G  ++ IR +   +E E N
Sbjct:   71 KDLETLQRSIVLSHAAGI-------GEFMDDATVRLMIILKINSLSRGYSGIRPLVIDALIQLVNSEVYPCIPKKGSVGASGDLAPLAHMSTVLLGEGEARY---QDKIISGKEALDIAGLTPITLAPKEGLALLNGTQASTAFALEGLFAAEDLYASATVCGAMSVEAALGSRKPFDPRIHRVRGHRSQMDAALAYRHLLAQSSEIGLSHQCCE------RVQDPYSLRCQPQVMGACLQQIRNSADILEIEAN 309          
BLAST of CF832012 vs. ExPASy Swiss-Prot
Match: HUTH_CITK8 (Histidine ammonia-lyase OS=Citrobacter koseri (strain ATCC BAA-895 / CDC 4225-83 / SGSC4696) GN=hutH PE=3 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 4.731e-29
Identity = 84/256 (32.81%), Postives = 135/256 (52.73%), Query Frame = 3
Query:    6 TKTVGALQKELIRFLNAGIFGNGTESSHTLPHSTTRAAMLVRVNTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKATGPNGEIIDAQEASKQAGFGFFELQPKEGLALVNGTAVGSGLASMVLFEANNLALLSEILSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYVNAAKKLHEIDPLQKPKQDRYALRTSPQWLGPQIEVIRFATKSIEREIN 773
            T+ +  LQ+ L+    AGI          L  +  R  M++++N+L +G+SGIR  ++EA+  L+N  + P +P +G++ ASGDL PL++++  L G   ++     GE + A+EA K+AG     L  KEGLAL+NGT   +  A   LFEA  L   + +  A+  E + G     D   H  +   GQI+AA +  H+L  +S +  A+  H  + +Q P    Y+LR  PQ +G  +  +R A + +  E N
Sbjct:   70 TEDLQNLQRSLVLSHAAGI-------GEPLDDAMVRLIMVLKINSLARGFSGIRLSVIEALIALVNAEVWPLIPAKGSVGASGDLAPLAHMSLTLLGEGKARW---QGEWLPAKEALKKAGLEPITLAAKEGLALLNGTQASTAFALRGLFEAQALFASAVVCGALTTEAVLGSRRPFDARIHAARGQRGQIDAAGLFRHVLTETSAI--AQSHHNCEKVQDP----YSLRCQPQVMGACLTQLRQAMEVLLVEAN 309          
BLAST of CF832012 vs. ExPASy Swiss-Prot
Match: HUTH_CLOTE (Histidine ammonia-lyase OS=Clostridium tetani GN=hutH PE=3 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 6.179e-29
Identity = 84/250 (33.60%), Postives = 133/250 (53.20%), Query Frame = 3
Query:   24 LQKELIRFLNAGIFGNGTESSHTLPHSTTRAAMLVRVNTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKATGPNGEIIDAQEASKQAGFGFFELQPKEGLALVNGTAVGSGLASMVLFEANNLALLSEILSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYVNAAKKLHEIDPLQKPKQDRYALRTSPQWLGPQIEVIRFATKSIEREIN 773
            LQ+ LIR   +   G G + S  +     RA ML R N L +GYSGIR   L  + ++LN  + P +  +G++ ASGDL PL+++   + G   ++     GEI+  +EA  +AG    EL  KEGLAL+NGT V +   ++ +++A  L  + +I +A+  E ++G  +  D   H ++ H GQ+  A  +  +++GS+YV    +L          QD Y+LR  PQ  G   + I F  + +E EIN
Sbjct:   79 LQENLIR---SHACGYGPKFSTDI----VRAIMLTRANALSKGYSGIRIGTLNTLIEMLNAGVHPQIHEKGSLGASGDLAPLAHMVLPMLGLGEAEY---KGEIMSGKEAMDKAGIPIIELDAKEGLALINGTQVLTATGALAVYDAIELLKVGDIAAALTIEALRGIKDAFDPRLHVIRAHEGQMATARNILKLIEGSTYVTRQGELR--------VQDAYSLRCVPQIHGASKDTIDFVKEKVEIEIN 310          
BLAST of CF832012 vs. ExPASy Swiss-Prot
Match: HUTH_PSEAE (Histidine ammonia-lyase OS=Pseudomonas aeruginosa GN=hutH PE=3 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 8.070e-29
Identity = 85/250 (34.00%), Postives = 132/250 (52.80%), Query Frame = 3
Query:   24 LQKELIRFLNAGIFGNGTESSHTLPHSTTRAAMLVRVNTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKATGPNGEIIDAQEASKQAGFGFFELQPKEGLALVNGTAVGSGLASMVLFEANNLALLSEILSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYVNAAKKLHEIDPLQKPKQDRYALRTSPQWLGPQIEVIRFATKSIEREIN 773
            LQ+ ++    AG+          L  +  R  ML++VN+L +G+SGIR ++++A+  L+N  + P +PL+G++ ASGDL PL++++ +L G   ++     GE + A EA   AG     L  KEGLAL+NGT V +  A   LFEA +L   + +   +  E M G     D   H  +   GQI+ AA    +L  SS V  A+   + D +Q P    Y+LR  PQ +G  +  +R A + +E E N
Sbjct:   75 LQRSIVLSHAAGV-------GEALDDAMVRLVMLLKVNSLARGFSGIRRKVIDALIALINAEVYPHIPLKGSVGASGDLAPLAHMSLVLIGESRAR---HRGEWLPAAEALAVAGLEPLTLAAKEGLALLNGTQVSTAYALRGLFEAEDLFAAATVCGGLSVEAMLGSRAPFDARIHAARGQRGQIDVAAAYRDLLTASSEV--ARSHEKCDKVQDP----YSLRCQPQVMGACLTQMRQAAEVLEIEAN 308          
BLAST of CF832012 vs. ExPASy Swiss-Prot
Match: HUTH_PSEAB (Histidine ammonia-lyase OS=Pseudomonas aeruginosa (strain UCBPP-PA14) GN=hutH PE=3 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 8.070e-29
Identity = 85/250 (34.00%), Postives = 132/250 (52.80%), Query Frame = 3
Query:   24 LQKELIRFLNAGIFGNGTESSHTLPHSTTRAAMLVRVNTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKATGPNGEIIDAQEASKQAGFGFFELQPKEGLALVNGTAVGSGLASMVLFEANNLALLSEILSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYVNAAKKLHEIDPLQKPKQDRYALRTSPQWLGPQIEVIRFATKSIEREIN 773
            LQ+ ++    AG+          L  +  R  ML++VN+L +G+SGIR ++++A+  L+N  + P +PL+G++ ASGDL PL++++ +L G   ++     GE + A EA   AG     L  KEGLAL+NGT V +  A   LFEA +L   + +   +  E M G     D   H  +   GQI+ AA    +L  SS V  A+   + D +Q P    Y+LR  PQ +G  +  +R A + +E E N
Sbjct:   75 LQRSIVLSHAAGV-------GEALDDAMVRLVMLLKVNSLARGFSGIRRKVIDALIALINAEVYPHIPLKGSVGASGDLAPLAHMSLVLIGESRAR---HRGEWLPAAEALAVAGLEPLTLAAKEGLALLNGTQVSTAYALRGLFEAEDLFAAATVCGGLSVEAMLGSRAPFDARIHAARGQRGQIDVAAAYRDLLTASSEV--ARSHEKCDKVQDP----YSLRCQPQVMGACLTQMRQAAEVLEIEAN 308          
BLAST of CF832012 vs. ExPASy Swiss-Prot
Match: HUTH_PSEA8 (Histidine ammonia-lyase OS=Pseudomonas aeruginosa (strain LESB58) GN=hutH PE=3 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 8.070e-29
Identity = 85/250 (34.00%), Postives = 132/250 (52.80%), Query Frame = 3
Query:   24 LQKELIRFLNAGIFGNGTESSHTLPHSTTRAAMLVRVNTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKATGPNGEIIDAQEASKQAGFGFFELQPKEGLALVNGTAVGSGLASMVLFEANNLALLSEILSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYVNAAKKLHEIDPLQKPKQDRYALRTSPQWLGPQIEVIRFATKSIEREIN 773
            LQ+ ++    AG+          L  +  R  ML++VN+L +G+SGIR ++++A+  L+N  + P +PL+G++ ASGDL PL++++ +L G   ++     GE + A EA   AG     L  KEGLAL+NGT V +  A   LFEA +L   + +   +  E M G     D   H  +   GQI+ AA    +L  SS V  A+   + D +Q P    Y+LR  PQ +G  +  +R A + +E E N
Sbjct:   75 LQRSIVLSHAAGV-------GEALDDAMVRLVMLLKVNSLARGFSGIRRKVIDALIALINAEVYPHIPLKGSVGASGDLAPLAHMSLVLIGESRAR---HRGEWLPAAEALAVAGLEPLTLAAKEGLALLNGTQVSTAYALRGLFEAEDLFAAATVCGGLSVEAMLGSRAPFDARIHAARGQRGQIDVAAAYRDLLTASSEV--ARSHEKCDKVQDP----YSLRCQPQVMGACLTQMRQAAEVLEIEAN 308          
BLAST of CF832012 vs. ExPASy Swiss-Prot
Match: HUTH_SHESH (Histidine ammonia-lyase OS=Shewanella sediminis (strain HAW-EB3) GN=hutH PE=3 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 1.377e-28
Identity = 78/238 (32.77%), Postives = 125/238 (52.52%), Query Frame = 3
Query:   60 IFGNGTESSHTLPHSTTRAAMLVRVNTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKATGPNGEIIDAQEASKQAGFGFFELQPKEGLALVNGTAVGSGLASMVLFEANNLALLSEILSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYVNAAKKLHEIDPLQKPKQDRYALRTSPQWLGPQIEVIRFATKSIEREIN 773
            +  +   +   +  +T R  M++++N+L +G+SGIR E++  +  L+N  + PC+P +G++ ASGDL PL+++   L G          G+I+ A+E  + AG    EL  KEGLAL+NGT   + LA   LF A +L   S ++ A+  E   G     D   H  +   GQI++AA+   +L   S ++    L  +D   +  QD Y+LR  PQ LG  +  IR A + +  E N
Sbjct:   81 VLSHAAGTGQYMQDATVRLMMVLKINSLSRGFSGIRLEVINFLIALVNAEVYPCVPEKGSVGASGDLAPLAHMCLPLLGEGEMSY---KGQILSAKEGLEIAGLKPIELAAKEGLALLNGTQASTALALEGLFNAEDLFAASSVIGAMSVEAAMGSRSPFDSRIHAARGQKGQIDSAALFRLLLGDESEIS----LSHVD--CERVQDPYSLRCQPQVLGACLTQIRHAAEVLGTEAN 309          
BLAST of CF832012 vs. ExPASy Swiss-Prot
Match: HUTH_CHLSY (Histidine ammonia-lyase OS=Chloroflexus aurantiacus (strain ATCC 29364 / DSM 637 / Y-400-fl) GN=hutH PE=3 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 1.377e-28
Identity = 81/223 (36.32%), Postives = 116/223 (52.02%), Query Frame = 3
Query:  105 TTRAAMLVRVNTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKATGPNGEIIDAQEASKQAGFGFFELQPKEGLALVNGTAVGSGLASMVLFEANNLALLSEILSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYVNAAKKLHEIDPLQKPKQDRYALRTSPQWLGPQIEVIRFATKSIEREIN 773
            TTRA ML+R NTL +G+SG+R + +E +  +LN  I P +P +G++ ASGDL PL+++A  L G    +     GE++ A  A ++ G+    L  KEGLAL NGTAV   L  +    A  L+  ++I   +  E + G P   D   H L+  P QIE AA +  +L GS++V      H         QD Y LR  PQ  G   + I +A      E+N
Sbjct:  101 TTRAIMLIRANTLARGHSGVRLQTVERLLDMLNQGIHPRIPCKGSLGASGDLAPLAHMALPLIGLGEVEW---QGEVLPAATALERLGWQPLHLAAKEGLALTNGTAVMCALGVIETARAETLSATADIAGCLSLEALYGTPAAFDARLHALRPFPRQIECAAHLRRLLAGSTFVRNNDPRH--------VQDAYTLRCIPQVHGAVRDAIAYARWVFAIELN 312          
BLAST of CF832012 vs. ExPASy Swiss-Prot
Match: HUTH_CHLAA (Histidine ammonia-lyase OS=Chloroflexus aurantiacus (strain ATCC 29366 / DSM 635 / J-10-fl) GN=hutH PE=3 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 1.377e-28
Identity = 81/223 (36.32%), Postives = 116/223 (52.02%), Query Frame = 3
Query:  105 TTRAAMLVRVNTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKATGPNGEIIDAQEASKQAGFGFFELQPKEGLALVNGTAVGSGLASMVLFEANNLALLSEILSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYVNAAKKLHEIDPLQKPKQDRYALRTSPQWLGPQIEVIRFATKSIEREIN 773
            TTRA ML+R NTL +G+SG+R + +E +  +LN  I P +P +G++ ASGDL PL+++A  L G    +     GE++ A  A ++ G+    L  KEGLAL NGTAV   L  +    A  L+  ++I   +  E + G P   D   H L+  P QIE AA +  +L GS++V      H         QD Y LR  PQ  G   + I +A      E+N
Sbjct:  101 TTRAIMLIRANTLARGHSGVRLQTVERLLDMLNQGIHPRIPCKGSLGASGDLAPLAHMALPLIGLGEVEW---QGEVLPAATALERLGWQPLHLAAKEGLALTNGTAVMCALGVIETARAETLSATADIAGCLSLEALYGTPAAFDARLHALRPFPRQIECAAHLRRLLAGSTFVRNNDPRH--------VQDAYTLRCIPQVHGAVRDAIAYARWVFAIELN 312          
BLAST of CF832012 vs. ExPASy Swiss-Prot
Match: HUTH_YERE8 (Histidine ammonia-lyase OS=Yersinia enterocolitica serotype O:8 / biotype 1B (strain 8081) GN=hutH PE=3 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.798e-28
Identity = 77/221 (34.84%), Postives = 124/221 (56.11%), Query Frame = 3
Query:  111 RAAMLVRVNTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKATGPNGEIIDAQEASKQAGFGFFELQPKEGLALVNGTAVGSGLASMVLFEANNLALLSEILSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYVNAAKKLHEIDPLQKPKQDRYALRTSPQWLGPQIEVIRFATKSIEREIN 773
            R  M++++N+L +G+SGIR E+++A+  L+N  + P +PL+G++ ASGDL PL++++ LL G   ++     GE +DA+ A  +AG     L  KEGLAL+NGT V +  A   LFEA +L   + +  ++  E   G     D   H ++   GQI+AA    H+L   S V+ + +    D +Q P    Y+LR  PQ +G  +  +R A + +  E N
Sbjct:   95 RLIMVLKINSLARGFSGIRLEVIQALITLVNAQVYPHIPLKGSVGASGDLAPLAHMSLLLLGEGKARY---QGEWLDARAALAKAGLQPLTLAAKEGLALLNGTQVSTAYALRGLFEAEDLYAAASVFGSLTVEAALGSRSPFDARIHAVRGQRGQIDAARTYRHLLGERSEVSESHR--NCDKVQDP----YSLRCQPQVMGACLTQMRQAAEVLAIESN 306          
The following BLAST results are available for this feature:
BLAST of CF832012 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 251
Match NameE-valueIdentityDescription
HUTH_VIBFM3.623e-2931.76Histidine ammonia-lyase OS=Vibrio fischeri (strain... [more]
HUTH_CITK84.731e-2932.81Histidine ammonia-lyase OS=Citrobacter koseri (str... [more]
HUTH_CLOTE6.179e-2933.60Histidine ammonia-lyase OS=Clostridium tetani GN=h... [more]
HUTH_PSEAE8.070e-2934.00Histidine ammonia-lyase OS=Pseudomonas aeruginosa ... [more]
HUTH_PSEAB8.070e-2934.00Histidine ammonia-lyase OS=Pseudomonas aeruginosa ... [more]
HUTH_PSEA88.070e-2934.00Histidine ammonia-lyase OS=Pseudomonas aeruginosa ... [more]
HUTH_SHESH1.377e-2832.77Histidine ammonia-lyase OS=Shewanella sediminis (s... [more]
HUTH_CHLSY1.377e-2836.32Histidine ammonia-lyase OS=Chloroflexus aurantiacu... [more]
HUTH_CHLAA1.377e-2836.32Histidine ammonia-lyase OS=Chloroflexus aurantiacu... [more]
HUTH_YERE81.798e-2834.84Histidine ammonia-lyase OS=Yersinia enterocolitica... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_01C18_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01C18, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832012 ID=CF832012; Name=CF832012; organism=Citrus sinensis; type=EST; length=774bp
GGAGAACCAAGACCGTCGGTGCTCTTCAGAAGGAGCTCATTAGATTTTTG
AACGCTGGAATCTTTGGAAACGGAACAGAGTCATCTCACACGCTACCTCA
CTCAACAACAAGGGCAGCCATGCTTGTGAGGGTTAACACTCTTCTCCAGG
GCTACTCTGGCATCCGATTTGAAATCCTGGAAGCGATCACAAAGCTGCTC
AATCACAACATCACTCCATGCCTCCCTCTTCGCGGCACAATCACTGCTTC
AGGGGATCTGGTTCCTCTTTCCTACATTGCCGGACTGCTCACCGGCCGGC
CCAATTCTAAGGCCACCGGGCCTAATGGAGAGATCATTGATGCCCAGGAA
GCCTCTAAACAAGCGGGTTTCGGGTTCTTTGAGTTGCAGCCTAAGGAGGG
TCTTGCTCTTGTCAATGGCACTGCTGTTGGTTCTGGCCTGGCTTCTATGG
TTCTGTTTGAGGCTAACAACCTTGCTCTGTTATCAGAAATTTTGTCAGCT
ATTTTTGCTGAAGTCATGCAAGGCAAACCTGAGTTCACTGATCACTTGAC
ACACAAATTGAAGCACCATCCTGGCCAAATTGAGGCTGCTGCTATAATGG
AACATATCCTCGATGGCAGCTCTTATGTTAACGCGGCTAAGAAGTTGCAT
GAGATTGATCCTCTGCAGAAGCCGAAACAGGATCGTTATGCCCTGAGAAC
TTCACCACAATGGCTCGGCCCTCAGATCGAAGTGATTCGGTTTGCAACCA
AGTCTATTGAACGGGAGATCAACT
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