CF832012

Overview
NameCF832012
Unique NameCF832012
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length774
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9654 contig Csv1_Contig9654:145..918. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF832012 vs. ExPASy Swiss-Prot
Match: HUTH_YERPS (Histidine ammonia-lyase OS=Yersinia pseudotuberculosis GN=hutH PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 2.348e-28
Identity = 83/256 (32.42%), Postives = 136/256 (53.12%), Query Frame = 3
Query:    6 TKTVGALQKELIRFLNAGIFGNGTESSHTLPHSTTRAAMLVRVNTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKATGPNGEIIDAQEASKQAGFGFFELQPKEGLALVNGTAVGSGLASMVLFEANNLALLSEILSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYVNAAKKLHEIDPLQKPKQDRYALRTSPQWLGPQIEVIRFATKSIEREIN 773
            T+ +  LQ+ ++    AG+ G   + +        R  M++++N+L +G+SGIR E+++A+  L+N  + P +PL+G++ ASGDL PL++++ LL G   ++     GE + A  A  QAG     L  KEGLAL+NGT V +  A   LFEA +L   + +   +  +   G     D   H ++   GQI+AA+   H+L   S ++ + K    D +Q P    Y+LR  PQ +G  +  IR A + +  E N
Sbjct:   70 TEDLENLQRSIVLSHAAGV-GEANDDA------IVRLIMVLKINSLARGFSGIRLEVIQALITLVNAGVYPHIPLKGSVGASGDLAPLAHMSLLLLGEGKARY---QGEWLPAHTALAQAGLQPLTLAAKEGLALLNGTQVSAAYALRGLFEAEDLYAAASVFGCLTVDAALGSRSPFDARIHAVRGQRGQIDAASTYRHLLGERSEISESHK--NCDKVQDP----YSLRCQPQVMGACLGQIRQAAEVLAIESN 309          
BLAST of CF832012 vs. ExPASy Swiss-Prot
Match: HUTH_YERPE (Histidine ammonia-lyase OS=Yersinia pestis GN=hutH PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 2.348e-28
Identity = 83/256 (32.42%), Postives = 136/256 (53.12%), Query Frame = 3
Query:    6 TKTVGALQKELIRFLNAGIFGNGTESSHTLPHSTTRAAMLVRVNTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKATGPNGEIIDAQEASKQAGFGFFELQPKEGLALVNGTAVGSGLASMVLFEANNLALLSEILSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYVNAAKKLHEIDPLQKPKQDRYALRTSPQWLGPQIEVIRFATKSIEREIN 773
            T+ +  LQ+ ++    AG+ G   + +        R  M++++N+L +G+SGIR E+++A+  L+N  + P +PL+G++ ASGDL PL++++ LL G   ++     GE + A  A  QAG     L  KEGLAL+NGT V +  A   LFEA +L   + +   +  +   G     D   H ++   GQI+AA+   H+L   S ++ + K    D +Q P    Y+LR  PQ +G  +  IR A + +  E N
Sbjct:   70 TEDLENLQRSIVLSHAAGV-GEANDDA------IVRLIMVLKINSLARGFSGIRLEVIQALITLVNAGVYPHIPLKGSVGASGDLAPLAHMSLLLLGEGKARY---QGEWLPAHTALAQAGLQPLTLAAKEGLALLNGTQVSAAYALRGLFEAEDLYAAASVFGCLTVDAALGSRSPFDARIHAVRGQRGQIDAASTYRHLLGERSEISESHK--NCDKVQDP----YSLRCQPQVMGACLGQIRQAAEVLAIESN 309          
BLAST of CF832012 vs. ExPASy Swiss-Prot
Match: HUTH_DESPS (Histidine ammonia-lyase OS=Desulfotalea psychrophila GN=hutH PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 2.348e-28
Identity = 81/250 (32.40%), Postives = 128/250 (51.20%), Query Frame = 3
Query:   24 LQKELIRFLNAGIFGNGTESSHTLPHSTTRAAMLVRVNTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKATGPNGEIIDAQEASKQAGFGFFELQPKEGLALVNGTAVGSGLASMVLFEANNLALLSEILSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYVNAAKKLHEIDPLQKPKQDRYALRTSPQWLGPQIEVIRFATKSIEREIN 773
            LQ+ LI    AG+          +  ST R  M++++N+L +GYSGIR E++EA+ +LLN  + P +P +G++ ASGDL PL++++ +L G   +      G+ +  +E  + AG     L PKEGLAL+NGT   +  A   LF A  L   + +  ++  +   G     + L H ++ H  QI+ AA    +L+ S    + K    +       QD Y+LR  PQ +G  +  IR A + I  E N
Sbjct:   77 LQRSLILSHAAGV-------GAFMADSTVRLMMVLKINSLARGYSGIRLEVIEALVQLLNAEVYPSVPQKGSVGASGDLAPLAHMSIVLLGEGEASY---RGQRLSGREGLELAGLSPITLGPKEGLALLNGTQASTAFALQGLFAAEELFATAMVSGSLSLDAALGSRRPFNPLIHAVRGHKSQIDVAASYRQLLEHSEIERSHKFCEAV-------QDPYSLRCQPQVMGACLNQIRNAAEVIGTEAN 309          
BLAST of CF832012 vs. ExPASy Swiss-Prot
Match: HUTH_PHOPR (Histidine ammonia-lyase OS=Photobacterium profundum GN=hutH PE=3 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 4.005e-28
Identity = 81/250 (32.40%), Postives = 135/250 (54.00%), Query Frame = 3
Query:   24 LQKELIRFLNAGIFGNGTESSHTLPHSTTRAAMLVRVNTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKATGPNGEIIDAQEASKQAGFGFFELQPKEGLALVNGTAVGSGLASMVLFEANNLALLSEILSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYVNAAKKLHEIDPLQKPKQDRYALRTSPQWLGPQIEVIRFATKSIEREIN 773
            LQ+ ++    AGI   GT     +  +T R  ++++VN+L +GYSGIR  ++ A+ +L+N  + PC+P +G++ ASGDL PL++++ +L G   ++     GE+I   +A + AG     L PKEGLAL+NGT   +  A    F A +L   + +  A+  +   G     D   H+++ H  QI+AA    H+L  +S +  + +  E        QD Y+LR  PQ +G  ++ IR +  ++E E N
Sbjct:   76 LQRSIVLSHAAGI---GT----FMDDATVRMMIVLKVNSLSRGYSGIRPLVVNALMQLVNTEVYPCIPKKGSVGASGDLAPLAHMSTVLLGEGEARY---QGEVITGAQALEIAGLEPITLAPKEGLALLNGTQASTAFALEGFFAAEDLYAAATVCGAMSVDAALGSRRPFDPRIHRVRGHRSQIDAAMGYRHMLGQNSEIGLSHQQCE------KVQDPYSLRCQPQVMGACLQQIRNSAVTLEVEAN 309          
BLAST of CF832012 vs. ExPASy Swiss-Prot
Match: HUTH_SORC5 (Histidine ammonia-lyase OS=Sorangium cellulosum (strain So ce56) GN=hutH PE=3 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 5.231e-28
Identity = 77/253 (30.43%), Postives = 132/253 (52.17%), Query Frame = 3
Query:   15 VGALQKELIRFLNAGIFGNGTESSHTLPHSTTRAAMLVRVNTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKATGPNGEIIDAQEASKQAGFGFFELQPKEGLALVNGTAVGSGLASMVLFEANNLALLSEILSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYVNAAKKLHEIDPLQKPKQDRYALRTSPQWLGPQIEVIRFATKSIEREIN 773
            + ALQ+ L+R    G+   G E    L  +  RA +++R   +  G+SG+R E+L+ +  LL   ++P +P +G++ ASGDL PL+++A  L G   ++     G+++ +  A  +AG    EL  KEGLAL+NGT   + L ++ L +A  L  +++I  A+  E + G     D    +++ HPGQ   A  +  +L GS  + +      +       QD Y+LR  PQ  G   + + +A + + RE+N
Sbjct:   72 IRALQRNLVRSHACGV---GPE----LGEAEVRAMIVLRAQVIALGHSGVRTEVLDLLAALLERRVSPRIPAQGSVGASGDLAPLAHLALTLIGEGEARF---EGQLLPSAVALAKAGLAPIELAAKEGLALINGTQYMTALGALALRDAAALCTVADIAGAVSLEALMGSKRPFDERLMRVRPHPGQAGTAGNLRALLGGSEIMQSHADCPRV-------QDAYSLRCMPQVHGATRDAVAWAAEVLTREVN 307          
BLAST of CF832012 vs. ExPASy Swiss-Prot
Match: HUTH_SHEON (Histidine ammonia-lyase OS=Shewanella oneidensis GN=hutH PE=3 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 5.231e-28
Identity = 76/238 (31.93%), Postives = 122/238 (51.26%), Query Frame = 3
Query:   60 IFGNGTESSHTLPHSTTRAAMLVRVNTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKATGPNGEIIDAQEASKQAGFGFFELQPKEGLALVNGTAVGSGLASMVLFEANNLALLSEILSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYVNAAKKLHEIDPLQKPKQDRYALRTSPQWLGPQIEVIRFATKSIEREIN 773
            +  +   +   +  +T R  M++++N+L +G+SGIR E++  +  L+N  + PC+P +G++ ASGDL PL+++   L G          G+II A E  + AG    +L  KEGLAL+NGT   + LA   LF A +L   S ++ A+  E   G     D   H  +   GQI++A +  ++L   S ++ +    E        QD Y+LR  PQ LG  +  IR A + +  E N
Sbjct:   84 VLSHAAGTGQYMQDATVRLMMVLKINSLSRGFSGIRLEVINFLISLVNAEVYPCVPEKGSVGASGDLAPLAHMCLPLLGEGEMSY---QGQIISAAEGLEIAGLKPIDLAAKEGLALLNGTQASTALALEGLFHAEDLFAASSVIGAMSVEAAMGSRSPFDPRIHAARGQKGQIDSAMVFRYLLGEESEISLSHANCE------KVQDPYSLRCQPQVLGACLTQIRQAAEVLATEAN 312          
BLAST of CF832012 vs. ExPASy Swiss-Prot
Match: HUTH_SALPK (Histidine ammonia-lyase OS=Salmonella paratyphi A (strain AKU_12601) GN=hutH PE=3 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 5.231e-28
Identity = 81/251 (32.27%), Postives = 129/251 (51.39%), Query Frame = 3
Query:   24 LQKELIRFLNAGIFGNGTESSHTLPHSTTRAAMLVRVNTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKATGPNGEIIDAQEASKQAGFGFFELQPKEGLALVNGTAVGSGLASMVLFEANNLALLSEILSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHIL-DGSSYVNAAKKLHEIDPLQKPKQDRYALRTSPQWLGPQIEVIRFATKSIEREIN 773
            LQ+ L+    AG+          L  +  R  M++++N+L +G+SGIR  ++EA+  L+N  + P +P +G++ ASGDL PL++++  L G   ++     GE + AQ A K+AG     L  KEGLAL+NGT   +  A   LFEA  L   + +  A+  E + G     D   H  +   GQI+AA +  H+L D S+   +    H++       QD Y+LR  PQ +G  +  +R   + +  E N
Sbjct:   76 LQRSLVLSHAAGV-------GDPLDDAMVRLIMVLKINSLARGFSGIRLSVIEALIALVNAGVYPLIPAKGSVGASGDLAPLAHLSLTLLGEGKARW---QGEWLPAQAALKKAGLEPVALAAKEGLALLNGTQASTAFALRGLFEAQELFASAVVCGALTTEAVLGSRRPFDARIHAARGQQGQIDAARLFRHLLTDTSAIAESHHHCHKV-------QDPYSLRCQPQVMGACLTQLRQTKEVLLAEAN 309          
BLAST of CF832012 vs. ExPASy Swiss-Prot
Match: HUTH_SALPA (Histidine ammonia-lyase OS=Salmonella paratyphi A GN=hutH PE=3 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 5.231e-28
Identity = 81/251 (32.27%), Postives = 129/251 (51.39%), Query Frame = 3
Query:   24 LQKELIRFLNAGIFGNGTESSHTLPHSTTRAAMLVRVNTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKATGPNGEIIDAQEASKQAGFGFFELQPKEGLALVNGTAVGSGLASMVLFEANNLALLSEILSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHIL-DGSSYVNAAKKLHEIDPLQKPKQDRYALRTSPQWLGPQIEVIRFATKSIEREIN 773
            LQ+ L+    AG+          L  +  R  M++++N+L +G+SGIR  ++EA+  L+N  + P +P +G++ ASGDL PL++++  L G   ++     GE + AQ A K+AG     L  KEGLAL+NGT   +  A   LFEA  L   + +  A+  E + G     D   H  +   GQI+AA +  H+L D S+   +    H++       QD Y+LR  PQ +G  +  +R   + +  E N
Sbjct:   76 LQRSLVLSHAAGV-------GDPLDDAMVRLIMVLKINSLARGFSGIRLSVIEALIALVNAGVYPLIPAKGSVGASGDLAPLAHLSLTLLGEGKARW---QGEWLPAQAALKKAGLEPVALAAKEGLALLNGTQASTAFALRGLFEAQELFASAVVCGALTTEAVLGSRRPFDARIHAARGQQGQIDAARLFRHLLTDTSAIAESHHHCHKV-------QDPYSLRCQPQVMGACLTQLRQTKEVLLAEAN 309          
BLAST of CF832012 vs. ExPASy Swiss-Prot
Match: HUTH_RHOS1 (Histidine ammonia-lyase OS=Rhodobacter sphaeroides (strain ATCC 17029 / ATH 2.4.9) GN=hutH PE=3 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 5.231e-28
Identity = 77/227 (33.92%), Postives = 122/227 (53.74%), Query Frame = 3
Query:   93 LPHSTTRAAMLVRVNTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKATGPNGEIIDAQEASKQAGFGFFELQPKEGLALVNGTAVGSGLASMVLFEANNLALLSEILSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYVNAAKKLHEIDPLQKPKQDRYALRTSPQWLGPQIEVIRFATKSIEREIN 773
            +P ST R  M +++ +L +G SG+R+EI+  +  +L   +TP +P +G++ ASGDL PL+++A ++ G   ++     G  +    A  +AG     L PKEGLAL+NGT   +  A   LFE    A  + ++SA+  + + G         H L+ H GQIEAAA M  +L+GS    A ++ H      +  QD Y +R  PQ  G  ++V+R A  ++  E N
Sbjct:   90 MPPSTARLMMALKLLSLGRGASGVRWEIVALLEGMLAAGVTPVIPAQGSVGASGDLAPLAHMAAVMIGEGEAEV---GGRRLPGAAALAEAGLAPVALGPKEGLALINGTQFSTAYALAGLFEGWRAAQAALVISALSTDAIMGSTAPLRPEIHALRGHAGQIEAAATMRALLEGS----AIRESHREG--DQRVQDPYCIRCQPQVTGAAMDVLRMAAGTLATEAN 307          
BLAST of CF832012 vs. ExPASy Swiss-Prot
Match: HUTH_MARMM (Histidine ammonia-lyase OS=Maricaulis maris (strain MCS10) GN=hutH PE=3 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 5.231e-28
Identity = 83/253 (32.81%), Postives = 134/253 (52.96%), Query Frame = 3
Query:   15 VGALQKELIRFLNAGIFGNGTESSHTLPHSTTRAAMLVRVNTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKATGPNGEIIDAQEASKQAGFGFFELQPKEGLALVNGTAVGSGLASMVLFEANNLALLSEILSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYVNAAKKLHEIDPLQKPKQDRYALRTSPQWLGPQIEVIRFATKSIEREIN 773
            +  LQ+ L+    AGI          L     R  M +++ +L +G SG+R+  + A+  LL+ ++ P +P +G++ ASGDL PL++++  L G    +AT   G+ + A +A  +AG    +L PKEGLAL+NGT   + LA   LFE       + +  A+  +  +G     D   H L+ HPGQI+ AA +  +LDGS  +++ +   +I       QD Y LR  PQ +G  ++++R A   +ERE N
Sbjct:   72 LATLQERLVLSHAAGI-------GEALDSRIVRLVMALKLASLGRGASGVRWTTIAAMQALLDADVLPVIPSQGSVGASGDLAPLAHMSAALIGA--GEATW-QGQRMPASDALAKAGLKPVQLGPKEGLALLNGTQTSTALALAGLFEVEAGFQAALVSGALSVDAAKGSVAPFDPRIHSLRGHPGQIDVAAALRGLLDGSGILSSHEGCEKI-------QDPYCLRCQPQVMGAVLDLLRQAGAVLEREAN 307          
The following BLAST results are available for this feature:
BLAST of CF832012 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 251
Match NameE-valueIdentityDescription
HUTH_YERPS2.348e-2832.42Histidine ammonia-lyase OS=Yersinia pseudotubercul... [more]
HUTH_YERPE2.348e-2832.42Histidine ammonia-lyase OS=Yersinia pestis GN=hutH... [more]
HUTH_DESPS2.348e-2832.40Histidine ammonia-lyase OS=Desulfotalea psychrophi... [more]
HUTH_PHOPR4.005e-2832.40Histidine ammonia-lyase OS=Photobacterium profundu... [more]
HUTH_SORC55.231e-2830.43Histidine ammonia-lyase OS=Sorangium cellulosum (s... [more]
HUTH_SHEON5.231e-2831.93Histidine ammonia-lyase OS=Shewanella oneidensis G... [more]
HUTH_SALPK5.231e-2832.27Histidine ammonia-lyase OS=Salmonella paratyphi A ... [more]
HUTH_SALPA5.231e-2832.27Histidine ammonia-lyase OS=Salmonella paratyphi A ... [more]
HUTH_RHOS15.231e-2833.92Histidine ammonia-lyase OS=Rhodobacter sphaeroides... [more]
HUTH_MARMM5.231e-2832.81Histidine ammonia-lyase OS=Maricaulis maris (strai... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_01C18_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01C18, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832012 ID=CF832012; Name=CF832012; organism=Citrus sinensis; type=EST; length=774bp
GGAGAACCAAGACCGTCGGTGCTCTTCAGAAGGAGCTCATTAGATTTTTG
AACGCTGGAATCTTTGGAAACGGAACAGAGTCATCTCACACGCTACCTCA
CTCAACAACAAGGGCAGCCATGCTTGTGAGGGTTAACACTCTTCTCCAGG
GCTACTCTGGCATCCGATTTGAAATCCTGGAAGCGATCACAAAGCTGCTC
AATCACAACATCACTCCATGCCTCCCTCTTCGCGGCACAATCACTGCTTC
AGGGGATCTGGTTCCTCTTTCCTACATTGCCGGACTGCTCACCGGCCGGC
CCAATTCTAAGGCCACCGGGCCTAATGGAGAGATCATTGATGCCCAGGAA
GCCTCTAAACAAGCGGGTTTCGGGTTCTTTGAGTTGCAGCCTAAGGAGGG
TCTTGCTCTTGTCAATGGCACTGCTGTTGGTTCTGGCCTGGCTTCTATGG
TTCTGTTTGAGGCTAACAACCTTGCTCTGTTATCAGAAATTTTGTCAGCT
ATTTTTGCTGAAGTCATGCAAGGCAAACCTGAGTTCACTGATCACTTGAC
ACACAAATTGAAGCACCATCCTGGCCAAATTGAGGCTGCTGCTATAATGG
AACATATCCTCGATGGCAGCTCTTATGTTAACGCGGCTAAGAAGTTGCAT
GAGATTGATCCTCTGCAGAAGCCGAAACAGGATCGTTATGCCCTGAGAAC
TTCACCACAATGGCTCGGCCCTCAGATCGAAGTGATTCGGTTTGCAACCA
AGTCTATTGAACGGGAGATCAACT
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