CF832018

Overview
NameCF832018
Unique NameCF832018
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length699
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig4194 contig Csv1_Contig4194:32..733. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CF832018 vs. ExPASy Swiss-Prot
Match: RS17E_META3 (30S ribosomal protein S17e OS=Methanococcus aeolicus (strain Nankai-3 / ATCC BAA-1280) GN=rps17e PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.292e-11
Identity = 29/61 (47.54%), Postives = 46/61 (75.41%), Query Frame = -3 
Query:  449 MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRI 631
            MGR+R   +K++   ++E+Y  R+T DF TNKK+++EVA I +KRLRN++AG+ T  MK++
Sbjct:    1 MGRIRQTFIKRAGEDLVEKYEDRLTTDFETNKKVIDEVAEIATKRLRNRVAGYVTKKMKKV 61
The following BLAST results are available for this feature:
BLAST of CF832018 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 31
Match NameE-valueIdentityDescription
RS17E_META31.292e-1147.5430S ribosomal protein S17e OS=Methanococcus aeolic... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_01C22_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01C22, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832018 ID=CF832018; Name=CF832018; organism=Citrus sinensis; type=EST; length=699bp
TTTTTTTTTTTTTTAACGAATAAAATGAAAAGACGAACAAGTCCCTTTAA
TCAACTAAAGTATGATGCCAGAGTTCAAGTTTTAACTAAACACCCTTCTT
AAAATAGTAAAGAAAACTAGTCACAAGAGCATTCATAACAAACACAAGAA
GTACTGATTAATAAGAACCTAAACTTCTCATTCTTGATTGAGCCACAAAG
CCTCAATTAACTCAGTACCTCCTGCCACCACCCCGACCAAAAACTGGAGG
AGTAATCATGCTCTGTGGCTCAACTTCAACAAGCCCAGAAATGTCGGACA
TGCCAAGAGCAGCAAGCATATCCAAGGTTTCCTTGTCAACCTTAATTTCA
TCAGTCTTAATAGCTGACTCATCAGGCACAAAGTCCATGCGGCGTTCGCG
CTCCTCTTCCTGCAATTTAAGGGAGATTCCACGAACTGGACCCTTCTGAA
TCCTCTTCATCAAATGGGTTGAGAACCCAGCAATTTTGTTACGCAGCCTC
TTCGAGGGGATGATAGCAACCTCCTCCAAAATTTTCTTGTTGGTATGGAA
GTCCAGTGTCATTCTTGAGTAGTACCTCTCAATCACCTGGCGAGAGGACT
TCTTCACGGTCTTGGTACGAACACGACCCATTTCAGTTTAAGAAGCTGCT
GCTGTCTTGAAGAAGACAAAGACGGTGAAGCAGAAGAGCTTGAGATGTC
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