CF832058

Overview
NameCF832058
Unique NameCF832058
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length655
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF832058 vs. ExPASy Swiss-Prot
Match: RL32_YEAST (60S ribosomal protein L32 OS=Saccharomyces cerevisiae GN=RPL32 PE=1 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 2.834e-26
Identity = 62/119 (52.10%), Postives = 75/119 (63.03%), Query Frame = 1
Query:   55 KIVXXXXXXXXXPQSDRKISVKENWRRPKGIDSRVRRKFKGCVLMPNIGYGSDKKTRHYLPNGFKKFVVHNVNELELLMMHNRTYCAEIAHNVSTKKRKEIVERAAQLDVVVTNKLARL 411
            KIV           SDR   V ENWR+ KGIDS VRR+F+G +  P IGYGS+KKT+   P+G K F+V NV +LE L MH +TY AEIAHN+S K R  I+ RA  L + VTN   RL
Sbjct:    8 KIVKKHTKKFKRHHSDRYHRVAENWRKQKGIDSVVRRRFRGNISQPKIGYGSNKKTKFLSPSGHKTFLVANVKDLETLTMHTKTYAAEIAHNISAKNRVVILARAKALGIKVTNPKGRL 126          
BLAST of CF832058 vs. ExPASy Swiss-Prot
Match: RL32_CANAL (60S ribosomal protein L32 OS=Candida albicans GN=RPL32 PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 3.701e-26
Identity = 61/127 (48.03%), Postives = 84/127 (66.14%), Query Frame = 1
Query:   31 MAVPLLTTKIVXXXXXXXXXPQSDRKISVKENWRRPKGIDSRVRRKFKGCVLMPNIGYGSDKKTRHYLPNGFKKFVVHNVNELELLMMHNRTYCAEIAHNVSTKKRKEIVERAAQLDVVVTNKLARL 411
            MA  +   KIV           SDR   V ENWR+ KGIDS VRR+F+G +  PNIGYGS+KKT+   P G+K ++V NV +L++L++H ++Y AEIA +VS++KR EIV +A +L V VTN   +L
Sbjct:    1 MATSVPHPKIVKKYTKKFKRHHSDRYHRVAENWRKQKGIDSCVRRRFRGTIPQPNIGYGSNKKTKFLNPAGYKVYLVKNVKDLDVLLLHTKSYAAEIASSVSSRKRVEIVAKAKKLGVKVTNPKGKL 127          
BLAST of CF832058 vs. ExPASy Swiss-Prot
Match: RL32_CANGA (60S ribosomal protein L32 OS=Candida glabrata GN=RPL32 PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 1.837e-25
Identity = 63/127 (49.61%), Postives = 78/127 (61.42%), Query Frame = 1
Query:   31 MAVPLLTTKIVXXXXXXXXXPQSDRKISVKENWRRPKGIDSRVRRKFKGCVLMPNIGYGSDKKTRHYLPNGFKKFVVHNVNELELLMMHNRTYCAEIAHNVSTKKRKEIVERAAQLDVVVTNKLARL 411
            MA  L   KIV           SDR   V ENWR+ KGIDS VRR+F+G +  P IGYGS+KKT+   P+G K  +V N+ +LE L MH ++Y AEIAHNVS+K R  ++ RA  L V VTN   RL
Sbjct:    1 MAASLPHPKIVKKHTKKFKRHHSDRYHRVSENWRKQKGIDSVVRRRFRGNISEPTIGYGSNKKTKFMSPSGHKVVLVSNLKDLETLTMHTKSYAAEIAHNVSSKNRVTLLARAKALGVKVTNAKGRL 127          
BLAST of CF832058 vs. ExPASy Swiss-Prot
Match: RL32_ENCCU (60S ribosomal protein L32 OS=Encephalitozoon cuniculi GN=RPL32 PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 7.223e-22
Identity = 58/130 (44.62%), Postives = 74/130 (56.92%), Query Frame = 1
Query:   40 PLLTTKIVXXXXXXXXXPQSDRKISVKENWRRPKGIDSRVRRKFKGCVLMPNIGYGSDKKTRHYLPNGFKKFVVHNVNELELLMMHNRTYCAEIAHNVSTKKRKEIVERAAQLDVVVTNKLARLRSQEEE 429
            PL+  K             SDR   VK +WRRP GIDS+VR++ KG   MP+I Y   K+ RH LPNG +K  + N+N+L  L   NR YC EIAH V  +KR  IV RA +L + + N  ARL  + EE
Sbjct:   10 PLVEIKEAYRKNKKFIRHHSDRYKRVKPSWRRPHGIDSKVRKRCKGEREMPSIKYKKPKEIRHLLPNGLRKVRIFNINDLTPLTSLNRFYCGEIAHAVGARKRIAIVNRAKELGICLLNGNARLIPEIEE 139          
BLAST of CF832058 vs. ExPASy Swiss-Prot
Match: RL32_PYRFU (50S ribosomal protein L32e OS=Pyrococcus furiosus GN=rpl32e PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.010e-15
Identity = 44/90 (48.89%), Postives = 58/90 (64.44%), Query Frame = 1
Query:  127 WRRPKGIDSRVRRKFKGCVLMPNIGYGSDKKTRHYLPNGFKKFVVHNVNELELLMMHNRTYCAEIAHNVSTKKRKEIVERAAQLDVVVTN 396
            WRRPKGIDS++R K KG    P+IG+ S K  R   P+G+++ +VHNV ELE L    +   A IAH V  KKR EI++RA +L + V N
Sbjct:   40 WRRPKGIDSKMRLKLKGKPRSPSIGWSSPKLVRGLHPSGYEEVLVHNVKELEAL--DPKRQAARIAHTVGKKKRIEIIKRAEELGIKVLN 127          
BLAST of CF832058 vs. ExPASy Swiss-Prot
Match: RL32_PYRHO (50S ribosomal protein L32e OS=Pyrococcus horikoshii GN=rpl32e PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 2.939e-15
Identity = 43/90 (47.78%), Postives = 58/90 (64.44%), Query Frame = 1
Query:  127 WRRPKGIDSRVRRKFKGCVLMPNIGYGSDKKTRHYLPNGFKKFVVHNVNELELLMMHNRTYCAEIAHNVSTKKRKEIVERAAQLDVVVTN 396
            WRRPKGIDS++R K KG    P+IG+ S +  R   P+G+++ ++HNV ELE L    R   A IAH V  KKR EI++RA +L + V N
Sbjct:   40 WRRPKGIDSKMRLKLKGKPRSPSIGWSSPRLVRGLHPSGYEEVLIHNVKELERL--DPRRQAARIAHTVGKKKRIEILKRAEELGIKVLN 127          
BLAST of CF832058 vs. ExPASy Swiss-Prot
Match: RL32_PYRAB (50S ribosomal protein L32e OS=Pyrococcus abyssi GN=rpl32e PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 6.548e-15
Identity = 42/90 (46.67%), Postives = 58/90 (64.44%), Query Frame = 1
Query:  127 WRRPKGIDSRVRRKFKGCVLMPNIGYGSDKKTRHYLPNGFKKFVVHNVNELELLMMHNRTYCAEIAHNVSTKKRKEIVERAAQLDVVVTN 396
            WRRPKGIDS++R K KG    P+IG+ S +  R   P+G+++ ++HNV ELE L    +   A IAH V  KKR EI++RA +L + V N
Sbjct:   40 WRRPKGIDSKMRLKLKGKPRSPSIGWSSPRLVRGLHPSGYEEVLIHNVKELEKL--DPKRQAARIAHTVGKKKRIEILKRAQELGIKVLN 127          
BLAST of CF832058 vs. ExPASy Swiss-Prot
Match: RL32_METKA (50S ribosomal protein L32e OS=Methanopyrus kandleri GN=rpl32 PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 6.548e-15
Identity = 42/92 (45.65%), Postives = 59/92 (64.13%), Query Frame = 1
Query:  121 ENWRRPKGIDSRVRRKFKGCVLMPNIGYGSDKKTRHYLPNGFKKFVVHNVNELELLMMHNRTYCAEIAHNVSTKKRKEIVERAAQLDVVVTN 396
            E WRRPKG  S++RRK K    MPN GYGS KK R   P+G+++ +V+N  +LE   +  +   A IA  V  +KR+EI+E+A +L +VV N
Sbjct:   41 EKWRRPKGRHSKMRRKLKSKPKMPNPGYGSPKKVRGLHPSGYEEVLVYNPKDLE--KIDPKRQAARIASRVGRRKRQEILEKAEELGIVVLN 130          
BLAST of CF832058 vs. ExPASy Swiss-Prot
Match: RL32_TRIHA (60S ribosomal protein L32 OS=Trichoderma harzianum GN=rpl32 PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.905e-14
Identity = 44/89 (49.44%), Postives = 54/89 (60.67%), Query Frame = 1
Query:   94 QSDRKISVKENWRRPKGIDSRVRRKFKGCVLMPNIGYGSDKKTRHYLPNGFKKFVVHNVNELELL----MMHNRTYCAEIAHNVSTKKR 348
            QSDR   V  +WR+PKGID RVRR+F+G + MP IGYGS+KKTR   P+G   F +HN   L       M       AEIA  VS++KR
Sbjct:   22 QSDRFDRVGSSWRKPKGIDGRVRRRFRGTIRMPKIGYGSNKKTRFLTPSGHNAF-LHNARTLSCAAGCSMQSTDPSAAEIATPVSSRKR 109          
BLAST of CF832058 vs. ExPASy Swiss-Prot
Match: RL32_THESM (50S ribosomal protein L32e OS=Thermococcus sibiricus (strain MM 739 / DSM 12597) GN=rpl32e PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 3.593e-13
Identity = 39/90 (43.33%), Postives = 57/90 (63.33%), Query Frame = 1
Query:  127 WRRPKGIDSRVRRKFKGCVLMPNIGYGSDKKTRHYLPNGFKKFVVHNVNELELLMMHNRTYCAEIAHNVSTKKRKEIVERAAQLDVVVTN 396
            WR+PKG DS++R K KG    P+IG+ S K  R   P+G+++ +V+NV +LEL+   ++   A IA  V  KKR  I+ERA +L + V N
Sbjct:   38 WRKPKGTDSKMRVKLKGKARSPSIGWSSPKAVRGLHPSGYEEVLVYNVKDLELI--DSKRQAARIAATVGKKKRIMIIERARELGIKVLN 125          
The following BLAST results are available for this feature:
BLAST of CF832058 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 51
Match NameE-valueIdentityDescription
RL32_YEAST2.834e-2652.1060S ribosomal protein L32 OS=Saccharomyces cerevis... [more]
RL32_CANAL3.701e-2648.0360S ribosomal protein L32 OS=Candida albicans GN=R... [more]
RL32_CANGA1.837e-2549.6160S ribosomal protein L32 OS=Candida glabrata GN=R... [more]
RL32_ENCCU7.223e-2244.6260S ribosomal protein L32 OS=Encephalitozoon cunic... [more]
RL32_PYRFU1.010e-1548.8950S ribosomal protein L32e OS=Pyrococcus furiosus ... [more]
RL32_PYRHO2.939e-1547.7850S ribosomal protein L32e OS=Pyrococcus horikoshi... [more]
RL32_PYRAB6.548e-1546.6750S ribosomal protein L32e OS=Pyrococcus abyssi GN... [more]
RL32_METKA6.548e-1545.6550S ribosomal protein L32e OS=Methanopyrus kandler... [more]
RL32_TRIHA1.905e-1449.4460S ribosomal protein L32 OS=Trichoderma harzianum... [more]
RL32_THESM3.593e-1343.3350S ribosomal protein L32e OS=Thermococcus sibiric... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS02_01D23_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01D23, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832058 ID=CF832058; Name=CF832058; organism=Citrus sinensis; type=EST; length=655bp
GCAGAAGCCGCCGCTCATCGTTTCAGAAAAATGGCTGTTCCTTTGCTGAC
CACGAAGATAGTGAAGAAGCGTTTCAAGAAGTTCAAGAGGCCCCAGAGTG
ACAGGAAGATATCAGTGAAGGAAAATTGGCGAAGGCCGAAGGGTATTGAT
TCACGTGTCAGGAGAAAGTTCAAAGGATGTGTTCTGATGCCCAATATTGG
CTACGGCTCGGACAAGAAAACACGCCACTATCTGCCCAATGGATTCAAGA
AGTTTGTTGTGCACAATGTCAATGAACTGGAACTCTTGATGATGCACAAC
AGGACTTATTGTGCTGAGATAGCCCACAACGTATCAACCAAGAAGAGAAA
GGAGATTGTCGAGCGTGCTGCACAATTGGATGTTGTGGTCACCAACAAAT
TGGCCAGGTTGCGCAGCCAGGAGGAGGAGTAAAAATTGGTTTCTATATTG
TGTTAGTGTTTGCTTTTTGGCCAAATGTTTCCTAGGTTGTCTTTGGAATG
GATGAACATTTCCAGGGTTGAATTATGATGTATTTTCTATTTTTGTCACC
TGAATGATATTTTGAATTTGTTGTTTTTTGCGGAGCATGATTAATGTTAT
GTCAACTTAGGAGTTAAGGTTTATGGCCAAGCCTTTTATTAAAAAAAAAA
AAAAA
back to top