CF832063

Overview
NameCF832063
Unique NameCF832063
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length789
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF832063 vs. ExPASy Swiss-Prot
Match: RL2_THETN (50S ribosomal protein L2 OS=Thermoanaerobacter tengcongensis GN=rplB PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 5.080e-18
Identity = 56/139 (40.29%), Postives = 78/139 (56.12%), Query Frame = -2
Query:  381 VYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCW----PKVRGVAMNPVEHPHGGGNHQ-HIGH 782
            V  G+   + VGN LP+R+IP G +V N+E   G  G L RA+G  A +++   + D   +++PSG  ++I + CRA IGQV+        + KAG         R+ W    P VRG AMNPV+HPHGGG  +  IGH
Sbjct:  116 VESGENVDIKVGNALPLRNIPVGTIVHNIELIPGKGGQLVRAAGAAAQLMA--KEGDYVHIRMPSGEIRLINANCRATIGQVSNIDHENVKIGKAG---------RSRWLGIRPTVRGSAMNPVDHPHGGGEGKAPIGH 243          
BLAST of CF832063 vs. ExPASy Swiss-Prot
Match: RL2_SODGM (50S ribosomal protein L2 OS=Sodalis glossinidius (strain morsitans) GN=rplB PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 5.080e-18
Identity = 54/133 (40.60%), Postives = 73/133 (54.89%), Query Frame = -2
Query:  384 VYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIG 782
            +  G  A +  GN LP+R+IP G+ V NVE   G  G LAR++G Y  I++   D     ++L SG  + I S CRA +G+V       + L KAG +       R   P VRG AMNPV+HPHGGG  ++ G
Sbjct:  116 IQSGVDAAIKAGNALPMRNIPVGSTVHNVEMKPGKGGQLARSAGAYVQIVAR--DGAYVTLRLRSGEMRKIQSECRATLGEVGNAEHMLRVLGKAGASRW-----RGIRPTVRGTAMNPVDHPHGGGEGRNFG 241          
BLAST of CF832063 vs. ExPASy Swiss-Prot
Match: RK2_PHAAO (50S ribosomal protein L2, chloroplastic OS=Phalaenopsis aphrodite subsp. formosana GN=rpl2-A PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 5.080e-18
Identity = 52/131 (39.69%), Postives = 72/131 (54.96%), Query Frame = -2
Query:  402 VYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCW----PKVRGVAMNPVEHPHGGG 782
            +  G +  + +GN LP+  +P G  + N+E  +G  G LARA+G  A +I+    + T R  LPSG  ++I   C A +GQV   G  +K L +AG+          CW    P VRGV MNPV+HPHGGG
Sbjct:  114 IVSGTEVPISMGNALPLTDMPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLR--LPSGEVRLISKNCLATVGQVGNVGVNQKSLGRAGS---------KCWLGKRPVVRGVVMNPVDHPHGGG 233          
BLAST of CF832063 vs. ExPASy Swiss-Prot
Match: RK2_LEMMI (50S ribosomal protein L2, chloroplastic OS=Lemna minor GN=rpl2 PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 5.080e-18
Identity = 52/131 (39.69%), Postives = 72/131 (54.96%), Query Frame = -2
Query:  402 VYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCW----PKVRGVAMNPVEHPHGGG 782
            +  G +  + +GN LP+  +P G  + N+E  +G  G LARA+G  A +I+    + T R  LPSG  ++I   C A +GQV   G  +K L +AG+          CW    P VRGV MNPV+HPHGGG
Sbjct:  114 IVSGTEVPISMGNALPLTDMPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLR--LPSGEVRLISKNCLATVGQVGNVGVNQKSLGRAGS---------KCWLGKRPVVRGVVMNPVDHPHGGG 233          
BLAST of CF832063 vs. ExPASy Swiss-Prot
Match: RM02_MARPO (60S ribosomal protein L2, mitochondrial OS=Marchantia polymorpha GN=RPL2 PE=3 SV=2)

HSP 1 Score: 91.2781 bits (225), Expect = 6.635e-18
Identity = 55/129 (42.64%), Postives = 74/129 (57.36%), Query Frame = -2
Query:  369 MVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTV 755
            MVGN +P+  IP G  V N+E + G    L RA+G +A II    +     V+LPSG  K+I S CRA IG V+     ++   KAG +  ++  +R   P VRGVAMNPV+HPHGGG  +  G   +V
Sbjct:  358 MVGNCIPLAKIPIGTWVHNIERNPGQGAKLTRAAGTFAQIIQKVENTPQCIVRLPSGVDKLIDSRCRATIGIVSNLNHGKRKFNKAGQS--RWLGRR---PIVRGVAMNPVDHPHGGGEGRTKGGRPSV 481          
BLAST of CF832063 vs. ExPASy Swiss-Prot
Match: RL2_YERPY (50S ribosomal protein L2 OS=Yersinia pseudotuberculosis serotype O:3 (strain YPIII) GN=rplB PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 6.635e-18
Identity = 52/133 (39.10%), Postives = 73/133 (54.89%), Query Frame = -2
Query:  384 VYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIG 782
            +  G  A +  GN LP+R+IP G+ V NVE   G  G LAR++G Y  I++   D     ++L SG  + + + CRA +G+V       + L KAG +       R   P VRG AMNPV+HPHGGG  ++ G
Sbjct:  116 IQSGVDAAIKAGNTLPMRNIPVGSTVHNVEMKPGKGGQLARSAGAYVQIVAR--DGSYVTLRLRSGEMRKVQADCRATLGEVGNAEHMLRVLGKAGASRW-----RGIRPTVRGTAMNPVDHPHGGGEGRNFG 241          
BLAST of CF832063 vs. ExPASy Swiss-Prot
Match: RL2_YERPS (50S ribosomal protein L2 OS=Yersinia pseudotuberculosis GN=rplB PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 6.635e-18
Identity = 52/133 (39.10%), Postives = 73/133 (54.89%), Query Frame = -2
Query:  384 VYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIG 782
            +  G  A +  GN LP+R+IP G+ V NVE   G  G LAR++G Y  I++   D     ++L SG  + + + CRA +G+V       + L KAG +       R   P VRG AMNPV+HPHGGG  ++ G
Sbjct:  116 IQSGVDAAIKAGNTLPMRNIPVGSTVHNVEMKPGKGGQLARSAGAYVQIVAR--DGSYVTLRLRSGEMRKVQADCRATLGEVGNAEHMLRVLGKAGASRW-----RGIRPTVRGTAMNPVDHPHGGGEGRNFG 241          
BLAST of CF832063 vs. ExPASy Swiss-Prot
Match: RL2_YERPP (50S ribosomal protein L2 OS=Yersinia pestis (strain Pestoides F) GN=rplB PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 6.635e-18
Identity = 52/133 (39.10%), Postives = 73/133 (54.89%), Query Frame = -2
Query:  384 VYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIG 782
            +  G  A +  GN LP+R+IP G+ V NVE   G  G LAR++G Y  I++   D     ++L SG  + + + CRA +G+V       + L KAG +       R   P VRG AMNPV+HPHGGG  ++ G
Sbjct:  116 IQSGVDAAIKAGNTLPMRNIPVGSTVHNVEMKPGKGGQLARSAGAYVQIVAR--DGSYVTLRLRSGEMRKVQADCRATLGEVGNAEHMLRVLGKAGASRW-----RGIRPTVRGTAMNPVDHPHGGGEGRNFG 241          
BLAST of CF832063 vs. ExPASy Swiss-Prot
Match: RL2_YERPN (50S ribosomal protein L2 OS=Yersinia pestis bv. Antiqua (strain Nepal516) GN=rplB PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 6.635e-18
Identity = 52/133 (39.10%), Postives = 73/133 (54.89%), Query Frame = -2
Query:  384 VYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIG 782
            +  G  A +  GN LP+R+IP G+ V NVE   G  G LAR++G Y  I++   D     ++L SG  + + + CRA +G+V       + L KAG +       R   P VRG AMNPV+HPHGGG  ++ G
Sbjct:  116 IQSGVDAAIKAGNTLPMRNIPVGSTVHNVEMKPGKGGQLARSAGAYVQIVAR--DGSYVTLRLRSGEMRKVQADCRATLGEVGNAEHMLRVLGKAGASRW-----RGIRPTVRGTAMNPVDHPHGGGEGRNFG 241          
BLAST of CF832063 vs. ExPASy Swiss-Prot
Match: RL2_YERPG (50S ribosomal protein L2 OS=Yersinia pestis bv. Antiqua (strain Angola) GN=rplB PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 6.635e-18
Identity = 52/133 (39.10%), Postives = 73/133 (54.89%), Query Frame = -2
Query:  384 VYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIG 782
            +  G  A +  GN LP+R+IP G+ V NVE   G  G LAR++G Y  I++   D     ++L SG  + + + CRA +G+V       + L KAG +       R   P VRG AMNPV+HPHGGG  ++ G
Sbjct:  116 IQSGVDAAIKAGNTLPMRNIPVGSTVHNVEMKPGKGGQLARSAGAYVQIVAR--DGSYVTLRLRSGEMRKVQADCRATLGEVGNAEHMLRVLGKAGASRW-----RGIRPTVRGTAMNPVDHPHGGGEGRNFG 241          
The following BLAST results are available for this feature:
BLAST of CF832063 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL2_THETN5.080e-1840.2950S ribosomal protein L2 OS=Thermoanaerobacter ten... [more]
RL2_SODGM5.080e-1840.6050S ribosomal protein L2 OS=Sodalis glossinidius (... [more]
RK2_PHAAO5.080e-1839.6950S ribosomal protein L2, chloroplastic OS=Phalaen... [more]
RK2_LEMMI5.080e-1839.6950S ribosomal protein L2, chloroplastic OS=Lemna m... [more]
RM02_MARPO6.635e-1842.6460S ribosomal protein L2, mitochondrial OS=Marchan... [more]
RL2_YERPY6.635e-1839.1050S ribosomal protein L2 OS=Yersinia pseudotubercu... [more]
RL2_YERPS6.635e-1839.1050S ribosomal protein L2 OS=Yersinia pseudotubercu... [more]
RL2_YERPP6.635e-1839.1050S ribosomal protein L2 OS=Yersinia pestis (strai... [more]
RL2_YERPN6.635e-1839.1050S ribosomal protein L2 OS=Yersinia pestis bv. An... [more]
RL2_YERPG6.635e-1839.1050S ribosomal protein L2 OS=Yersinia pestis bv. An... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_01E03_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01E03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832063 ID=CF832063; Name=CF832063; organism=Citrus sinensis; type=EST; length=789bp
TTTTTTTTTTTTTTTTTCGAAAAAACAACATTTCCATTTACTCAATTCGA
TGAAGGCATCCATTAATATATCCAAAAATATCAAACTCAACTAAAGTTTT
GGATAAGAGCAAATTAAGCTAAACTTTAAGCCAACATAATTTAACATCAG
GATCATCCCAGAGATCCAAATCTGAACAAATTTTTCCAAGGTAATGATGC
AGCAGGAAAAGTAAAATGACAGATCGCGATAGAGAGACGATTTGTGGTAA
CACAAAGGATTTAAGCCTTGTCGGCCTTGGCTGCAGTGGCAGCAGCTTGT
CCTCTGAGCCGACCAGTCCTCCTGGCTGCAATAAGACCAACCTTCTGGCC
AGGGGGAGCATCACGCCTAACAGTGCTAGCATGACCAATGTGCTGGTGGT
TACCTCCTCCATGAGGATGCTCCACTGGGTTCATGGCCACACCACGCACC
TTAGGCCAGCAGTTTCGCTTCACTCTGAATTTGTGGTATGCATTACCAGC
TTTGAGAAGGGGCTTCTCAGTCCTCCCTCCGCCGGCAACCTGCCCAATCA
TAGCTCTGCAGCCACTTGGAATAATCTTTTTGGCACCAGATGGAAGCTTG
ACCCTGGTGGTGTCATTATCGGGGTTATGACTGATGATAACGGCATAATC
ACCAGAAGCTCTAGCGAGAACACCGCGATCACCAACATGATGCTCAACGT
TGCAAACGACAGCTCCTTCAGGGATAGATCTAACGGGCAACACATTACCA
ACCATCAGAGTGGCTTTCTTGCCGCAGTACACGAACTGA
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