CF832063

Overview
NameCF832063
Unique NameCF832063
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length789
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig11638 contig Csv1_Contig11638:326..1114. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF832063 vs. ExPASy Swiss-Prot
Match: RL2_PYRAE (50S ribosomal protein L2P OS=Pyrobaculum aerophilum GN=rpl2p PE=3 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 1.572e-35
Identity = 78/153 (50.98%), Postives = 97/153 (63.40%), Query Frame = -2
Query:  330 QFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 788
            Q V  GK A+   GN++ +  IPEG ++ NVE   GD G  ARA G YAV+I   P+ + T ++LPSG    + S  RA +G VAGGGR EKP LKAG  YH+ R K   +P VRG AM+P  HPHGGG+HQ  G  + V + APPGQKVG I
Sbjct:   78 QVVEIGKGASPKTGNIMILGEIPEGTMIFNVEKRAGDGGKFARAGGTYAVVIGQKPEENKTIIRLPSGRTVEVDSRGRATVGIVAGGGRIEKPFLKAGKKYHRARAKAWKYPTVRGKAMSPYAHPHGGGSHQKGG--TPVPKTAPPGQKVGFI 228          
BLAST of CF832063 vs. ExPASy Swiss-Prot
Match: RL2_PYRCJ (50S ribosomal protein L2P OS=Pyrobaculum calidifontis (strain JCM 11548 / VA1) GN=rpl2p PE=3 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 2.053e-35
Identity = 79/153 (51.63%), Postives = 97/153 (63.40%), Query Frame = -2
Query:  330 QFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 788
            Q +  G  A   VGNVLP+  IPEG +V NVE   GD G  AR+ G YA++I   P+ + T V+LPSG    + +  RA IG VAGGGR EKP +KAG  YH+ R K   +P VRG AM+P  HPHGGG+HQ  G  + V + APPGQKVG I
Sbjct:   76 QVIQVGPDAPPAVGNVLPLGKIPEGTMVFNVEKRFGDGGKFARSGGTYALVIGQRPEENKTIVRLPSGRVIEVDARGRATIGIVAGGGRVEKPFVKAGKKYHRARAKSWKYPTVRGKAMSPYAHPHGGGSHQKGG--TPVPKTAPPGQKVGFI 226          
BLAST of CF832063 vs. ExPASy Swiss-Prot
Match: RL2_METPE (50S ribosomal protein L2P OS=Methanosphaerula palustris (strain ATCC BAA-1556 / DSM 19958 / E1-9c) GN=rpl2p PE=3 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 2.053e-35
Identity = 73/148 (49.32%), Postives = 91/148 (61.49%), Query Frame = -2
Query:  330 GKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 773
            G +A +  GN LP+  IP G+ +CN+E   GD G   RASG  A+II    D     VK+PSG  K   S C A +G VAGGGR EKP +KAG  +HK + +   WP+VRGVAMN ++HP GGG HQH G   TV R   PG+KVG +
Sbjct:   84 GPEAEVKNGNTLPISKIPTGSYICNIEARPGDGGKFVRASGVQAIIIDKTVDR--VGVKMPSGKMKWFSSRCLATVGVVAGGGRGEKPFVKAGKKFHKVKSQATYWPRVRGVAMNVIDHPFGGGGHQHTGRPKTVSRGTSPGRKVGSV 229          
BLAST of CF832063 vs. ExPASy Swiss-Prot
Match: RL2_PYRAB (50S ribosomal protein L2P OS=Pyrococcus abyssi GN=rpl2p PE=3 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 2.681e-35
Identity = 77/153 (50.33%), Postives = 94/153 (61.44%), Query Frame = -2
Query:  330 QFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 788
            Q +Y G  A + +GN LP+  IPEG  V N+E   GD G   RA G YA+++S   + D   V+LPSG  K     CRA IG VAGGGR EKPL+KAG AY+K++ +   WP  RGV MN V HP GG  H H G  +T  R APPG+KVG I
Sbjct:   81 QEIYIGPDAPIAIGNTLPLAKIPEGTYVYNIEGIPGDGGKYVRAGGTYALVVSR--EKDKVIVQLPSGELKAFNPNCRATIGVVAGGGRLEKPLVKAGKAYYKYKARNRFWPTPRGVKMNAVNHPFGGKEH-HPGKPTTTSRRAPPGRKVGHI 230          
BLAST of CF832063 vs. ExPASy Swiss-Prot
Match: RL2_PYRHO (50S ribosomal protein L2P OS=Pyrococcus horikoshii GN=rpl2p PE=3 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 4.574e-35
Identity = 76/153 (49.67%), Postives = 94/153 (61.44%), Query Frame = -2
Query:  330 QFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 788
            Q +Y G  A + +GN LP+  IPEG  + N+E   GD G   RA G YA+++S   + D   V+LPSG  K     CRA IG VAGGGR EKPL+KAG AY+K++ +   WP  RGV MN V HP GG  H H G  +T  R APPG+KVG I
Sbjct:   81 QEIYIGPDAPVEIGNTLPLAKIPEGTYIYNIEGVPGDGGKYVRAGGTYALVVSR--EKDKVIVQLPSGELKAFDPNCRATIGVVAGGGRLEKPLVKAGKAYYKYKARNKFWPTPRGVKMNAVNHPFGGKEH-HPGKPTTTSRRAPPGRKVGHI 230          
BLAST of CF832063 vs. ExPASy Swiss-Prot
Match: RL2_METBU (50S ribosomal protein L2P OS=Methanococcoides burtonii (strain DSM 6242) GN=rpl2p PE=3 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 5.973e-35
Identity = 73/149 (48.99%), Postives = 95/149 (63.76%), Query Frame = -2
Query:  330 CGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 776
            CG  A +  GN LP+  IPEG  +CN+E    D G  AR+SG YA ++S   +     V++PSG  K     CRA IG VAGGGR ++P LKAG  YHK + +   +P+V G+AMN V+HP GGGN +H G  +TV R+APPG+KVG I
Sbjct:   83 CGVSAEVKPGNTLPLAEIPEGIPICNIESKPNDGGQYARSSGVYATLVSR--ELSKVVVRMPSGVLKWFHPKCRATIGIVAGGGRVDRPFLKAGKKYHKMKARAAKYPRVSGIAMNVVDHPFGGGNRKHPGKPTTVSRNAPPGRKVGHI 229          
BLAST of CF832063 vs. ExPASy Swiss-Prot
Match: RL2_NITMS (50S ribosomal protein L2P OS=Nitrosopumilus maritimus (strain SCM1) GN=rpl2p PE=3 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 1.019e-34
Identity = 70/148 (47.30%), Postives = 95/148 (64.19%), Query Frame = -2
Query:  330 GKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 773
            G K+ +  GNV+ +++IP+G +VCN+E H GD G + +++G  A + SH  +  T  VKLPSG    +    RAMIG +AGGG +E+P + AG  +  F+ K   +P VRGVA     HPHGGG HQH+G +STV RD PPG KVG I
Sbjct:   85 GLKSKIEKGNVISIQNIPDGTIVCNIEKHFGDGGAIVKSAGTDATVFSHGDEGVT--VKLPSGKFTTLNPKNRAMIGTLAGGGASERPFMSAGGKWRNFKAKGKKYPIVRGVAQAAYVHPHGGGRHQHVGQSSTVSRDTPPGAKVGSI 230          
BLAST of CF832063 vs. ExPASy Swiss-Prot
Match: RL2_THEON (50S ribosomal protein L2P OS=Thermococcus onnurineus (strain NA1) GN=rpl2p PE=3 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 1.331e-34
Identity = 77/148 (52.03%), Postives = 94/148 (63.51%), Query Frame = -2
Query:  330 GKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 773
            G  A + +GN LP+  IPEG+ V ++E   GD G   RA G YA+++S   + D   V+LPSG  K     CRA IG VAGGGR EKP++KAG AY+  + +   WPK RGV MN V HPHGG  H HIG  STV R APPG+KVG I
Sbjct:   86 GPNAPIKIGNTLPLAMIPEGSYVYDIEGTPGDGGKYVRAGGVYALVVSR--EKDKVIVQLPSGELKQFNPMCRATIGVVAGGGRLEKPIVKAGKAYYIAKARNRFWPKPRGVKMNAVNHPHGGKEH-HIGRPSTVSRRAPPGRKVGHI 230          
BLAST of CF832063 vs. ExPASy Swiss-Prot
Match: RL2_PYRAR (50S ribosomal protein L2P OS=Pyrobaculum arsenaticum (strain DSM 13514 / JCM 11321) GN=rpl2p PE=3 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 1.331e-34
Identity = 75/153 (49.02%), Postives = 97/153 (63.40%), Query Frame = -2
Query:  330 QFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 788
            Q +  G  AT   GN++ +  IPEG ++ NVE   GD G  AR+SG YAV++   P+ + T ++LPSG    + +  RA +G VAGGGR EKP LKAG  YH+ R K   +P VRG AM+P  HPHGGG+HQ  G  + V + APPGQKVG I
Sbjct:   78 QVIEMGSGATPKAGNIMILGEIPEGTMIFNVEKRAGDGGKYARSSGTYAVVVGQKPEENKTIIRLPSGRVIEVDARGRATVGIVAGGGRIEKPFLKAGKKYHRARAKAWKYPTVRGKAMSPYAHPHGGGSHQKGG--TPVPKTAPPGQKVGFI 228          
BLAST of CF832063 vs. ExPASy Swiss-Prot
Match: RL2_METAC (50S ribosomal protein L2P OS=Methanosarcina acetivorans GN=rpl2p PE=3 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 1.331e-34
Identity = 70/151 (46.36%), Postives = 97/151 (64.24%), Query Frame = -2
Query:  330 VYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 782
            + CG  A +  GN++P+ ++PEG  +CNVE    D G   R+SG YA +++H      T V +PSG  K +   CRA++G VAG GR ++P LKAG  YHK + +   +P+V  VAMNP +HP GGG  +H G  +TV R+APPG+KVGLI
Sbjct:   81 IECGDDAEVKPGNIVPIGNVPEGFFICNVESKPNDGGKFVRSSGVYATVVTHEATR--TAVSMPSGNIKWLNPKCRAVVGIVAGSGRVDRPWLKAGKKYHKMKTRAAKYPRVSAVAMNPRDHPFGGGAWKHPGKPTTVSRNAPPGRKVGLI 229          
The following BLAST results are available for this feature:
BLAST of CF832063 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL2_PYRAE1.572e-3550.9850S ribosomal protein L2P OS=Pyrobaculum aerophilu... [more]
RL2_PYRCJ2.053e-3551.6350S ribosomal protein L2P OS=Pyrobaculum calidifon... [more]
RL2_METPE2.053e-3549.3250S ribosomal protein L2P OS=Methanosphaerula palu... [more]
RL2_PYRAB2.681e-3550.3350S ribosomal protein L2P OS=Pyrococcus abyssi GN=... [more]
RL2_PYRHO4.574e-3549.6750S ribosomal protein L2P OS=Pyrococcus horikoshii... [more]
RL2_METBU5.973e-3548.9950S ribosomal protein L2P OS=Methanococcoides burt... [more]
RL2_NITMS1.019e-3447.3050S ribosomal protein L2P OS=Nitrosopumilus mariti... [more]
RL2_THEON1.331e-3452.0350S ribosomal protein L2P OS=Thermococcus onnurine... [more]
RL2_PYRAR1.331e-3449.0250S ribosomal protein L2P OS=Pyrobaculum arsenatic... [more]
RL2_METAC1.331e-3446.3650S ribosomal protein L2P OS=Methanosarcina acetiv... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_01E03_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01E03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832063 ID=CF832063; Name=CF832063; organism=Citrus sinensis; type=EST; length=789bp
TTTTTTTTTTTTTTTTTCGAAAAAACAACATTTCCATTTACTCAATTCGA
TGAAGGCATCCATTAATATATCCAAAAATATCAAACTCAACTAAAGTTTT
GGATAAGAGCAAATTAAGCTAAACTTTAAGCCAACATAATTTAACATCAG
GATCATCCCAGAGATCCAAATCTGAACAAATTTTTCCAAGGTAATGATGC
AGCAGGAAAAGTAAAATGACAGATCGCGATAGAGAGACGATTTGTGGTAA
CACAAAGGATTTAAGCCTTGTCGGCCTTGGCTGCAGTGGCAGCAGCTTGT
CCTCTGAGCCGACCAGTCCTCCTGGCTGCAATAAGACCAACCTTCTGGCC
AGGGGGAGCATCACGCCTAACAGTGCTAGCATGACCAATGTGCTGGTGGT
TACCTCCTCCATGAGGATGCTCCACTGGGTTCATGGCCACACCACGCACC
TTAGGCCAGCAGTTTCGCTTCACTCTGAATTTGTGGTATGCATTACCAGC
TTTGAGAAGGGGCTTCTCAGTCCTCCCTCCGCCGGCAACCTGCCCAATCA
TAGCTCTGCAGCCACTTGGAATAATCTTTTTGGCACCAGATGGAAGCTTG
ACCCTGGTGGTGTCATTATCGGGGTTATGACTGATGATAACGGCATAATC
ACCAGAAGCTCTAGCGAGAACACCGCGATCACCAACATGATGCTCAACGT
TGCAAACGACAGCTCCTTCAGGGATAGATCTAACGGGCAACACATTACCA
ACCATCAGAGTGGCTTTCTTGCCGCAGTACACGAACTGA
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