CF832064

Overview
NameCF832064
Unique NameCF832064
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length749
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF832064 vs. ExPASy Swiss-Prot
Match: RL2_BORBU (50S ribosomal protein L2 OS=Borrelia burgdorferi GN=rplB PE=3 SV=2)

HSP 1 Score: 92.4337 bits (228), Expect = 2.747e-18
Identity = 54/130 (41.54%), Postives = 77/130 (59.23%), Query Frame = 3
Query:   18 GKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIG 407
            G  A + +GN LP+ +IP G  V N+E +VG  G L R++G YA+I++   D +   VKL SG  ++I   C A IG++         + KAG +  ++  +R   PKVRGVAMNPV+HPHGGG  +  G
Sbjct:  121 GPNAPIKIGNALPLENIPIGRTVHNIELNVGKGGQLIRSAGGYAMILA--SDGNYVTVKLSSGEMRLIFKKCIATIGEIGNEDYANISIGKAGKS--RWLGRR---PKVRGVAMNPVDHPHGGGEGKTSG 243          
BLAST of CF832064 vs. ExPASy Swiss-Prot
Match: RK2_HUPLU (50S ribosomal protein L2, chloroplastic OS=Huperzia lucidula GN=rpl2 PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.747e-18
Identity = 55/127 (43.31%), Postives = 75/127 (59.06%), Query Frame = 3
Query:    9 VYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGG 389
            +  G  AT+++GN LP+ ++P G  + NVE   G  G LARA+G  A +I+      T+R  LPSG  ++I   C A +GQV       + L KAG+   ++  KR   PKVRGV MNPV+HPHGGG
Sbjct:  117 IISGPMATILIGNALPLTNMPLGTTIHNVEITPGRGGQLARAAGTAAKLIAKEGRLATSR--LPSGEVRLISQNCLATVGQVGNVDDNNRTLGKAGS--KRWLGKR---PKVRGVVMNPVDHPHGGG 236          
BLAST of CF832064 vs. ExPASy Swiss-Prot
Match: RK2_GOSHI (50S ribosomal protein L2, chloroplastic OS=Gossypium hirsutum GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.747e-18
Identity = 51/131 (38.93%), Postives = 73/131 (55.73%), Query Frame = 3
Query:    9 VYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCW----PKVRGVAMNPVEHPHGGG 389
            +  G +  + +GN LP+  +P G  + N+E  +G  G LARA+G  A +I+   +  +  +KLPSG  ++I   C A +GQV   G  +K L +AG+          CW    P VRGV MNPV+HPHGGG
Sbjct:  114 IVSGTEVPIKMGNALPLTDMPLGTAIHNIEITLGRGGQLARAAGAVAKLIA--KEGKSATLKLPSGEVRLISKNCSATVGQVGNVGVNQKSLGRAGS---------KCWLGKRPVVRGVVMNPVDHPHGGG 233          
BLAST of CF832064 vs. ExPASy Swiss-Prot
Match: RK2_GOSBA (50S ribosomal protein L2, chloroplastic OS=Gossypium barbadense GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.747e-18
Identity = 51/131 (38.93%), Postives = 73/131 (55.73%), Query Frame = 3
Query:    9 VYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCW----PKVRGVAMNPVEHPHGGG 389
            +  G +  + +GN LP+  +P G  + N+E  +G  G LARA+G  A +I+   +  +  +KLPSG  ++I   C A +GQV   G  +K L +AG+          CW    P VRGV MNPV+HPHGGG
Sbjct:  114 IVSGTEVPIKMGNALPLTDMPLGTAIHNIEITLGRGGQLARAAGAVAKLIA--KEGKSATLKLPSGEVRLISKNCSATVGQVGNVGVNQKSLGRAGS---------KCWLGKRPVVRGVVMNPVDHPHGGG 233          
BLAST of CF832064 vs. ExPASy Swiss-Prot
Match: RK2_ARATH (50S ribosomal protein L2, chloroplastic OS=Arabidopsis thaliana GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.747e-18
Identity = 51/131 (38.93%), Postives = 73/131 (55.73%), Query Frame = 3
Query:    9 VYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCW----PKVRGVAMNPVEHPHGGG 389
            +  G +  + +GN LP+  +P G  + N+E  +G  G LARA+G  A +I+   +  +  +KLPSG  ++I   C A +GQV   G  +K L +AG+          CW    P VRGV MNPV+HPHGGG
Sbjct:  114 IVSGTEVPIKMGNALPLTDMPLGTAIHNIEITLGRGGQLARAAGAVAKLIA--KEGKSATLKLPSGEVRLISKNCSATVGQVGNVGVNQKSLGRAGS---------KCWLGKRPVVRGVVMNPVDHPHGGG 233          
BLAST of CF832064 vs. ExPASy Swiss-Prot
Match: RK2B_SOYBN (50S ribosomal protein L2-B, chloroplastic OS=Glycine max GN=rpl2-B PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.747e-18
Identity = 51/131 (38.93%), Postives = 73/131 (55.73%), Query Frame = 3
Query:    9 VYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCW----PKVRGVAMNPVEHPHGGG 389
            +  G +  + +GN LP+  +P G  + N+E  +G  G LARA+G  A +I+   +  +  +KLPSG  ++I   C A +GQV   G  +K L +AG+          CW    P VRGV MNPV+HPHGGG
Sbjct:  114 IVSGTEVPIKMGNALPLSDMPLGTAIHNIEITLGKGGQLARAAGAVAKLIA--KEGKSATLKLPSGEVRLISKNCSATVGQVGNVGVNQKNLGRAGS---------KCWLGKRPVVRGVVMNPVDHPHGGG 233          
BLAST of CF832064 vs. ExPASy Swiss-Prot
Match: RK2A_SOYBN (50S ribosomal protein L2-A, chloroplastic OS=Glycine max GN=rpl2-A PE=3 SV=2)

HSP 1 Score: 92.4337 bits (228), Expect = 2.747e-18
Identity = 51/131 (38.93%), Postives = 73/131 (55.73%), Query Frame = 3
Query:    9 VYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCW----PKVRGVAMNPVEHPHGGG 389
            +  G +  + +GN LP+  +P G  + N+E  +G  G LARA+G  A +I+   +  +  +KLPSG  ++I   C A +GQV   G  +K L +AG+          CW    P VRGV MNPV+HPHGGG
Sbjct:  114 IVSGTEVPIKMGNALPLTDMPLGTAIHNIEITLGKGGQLARAAGAVAKLIA--KEGKSATLKLPSGEVRLISKNCSATVGQVGNVGVNQKNLGRAGS---------KCWLGKRPVVRGVVMNPVDHPHGGG 233          
BLAST of CF832064 vs. ExPASy Swiss-Prot
Match: RL2_THEPX (50S ribosomal protein L2 OS=Thermoanaerobacter sp. (strain X514) GN=rplB PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 3.587e-18
Identity = 55/136 (40.44%), Postives = 78/136 (57.35%), Query Frame = 3
Query:   18 GKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCW----PKVRGVAMNPVEHPHGGGNHQ-HIGH 410
            G+   + VGN LP+R+IP G ++ N+E   G  G L RA+G  A +++   + D  +V++PSG  ++I + CRA IGQV+        + KAG         R+ W    P VRG AMNPV+HPHGGG  +  IGH
Sbjct:  119 GENVDIKVGNALPLRNIPVGTIIHNIELIPGKGGQLVRAAGTAAQLMA--KEGDYVQVRMPSGEIRLIKADCRATIGQVSNLDHENVKIGKAG---------RSRWLGIRPTVRGSAMNPVDHPHGGGEGKAPIGH 243          
BLAST of CF832064 vs. ExPASy Swiss-Prot
Match: RL2_THEP3 (50S ribosomal protein L2 OS=Thermoanaerobacter pseudethanolicus (strain ATCC 33223 / 39E) GN=rplB PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 3.587e-18
Identity = 55/136 (40.44%), Postives = 78/136 (57.35%), Query Frame = 3
Query:   18 GKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCW----PKVRGVAMNPVEHPHGGGNHQ-HIGH 410
            G+   + VGN LP+R+IP G ++ N+E   G  G L RA+G  A +++   + D  +V++PSG  ++I + CRA IGQV+        + KAG         R+ W    P VRG AMNPV+HPHGGG  +  IGH
Sbjct:  119 GENVDIKVGNALPLRNIPVGTIIHNIELIPGKGGQLVRAAGTAAQLMA--KEGDYVQVRMPSGEIRLIKADCRATIGQVSNLDHENVKIGKAG---------RSRWLGIRPTVRGSAMNPVDHPHGGGEGKAPIGH 243          
BLAST of CF832064 vs. ExPASy Swiss-Prot
Match: RL2_SALTY (50S ribosomal protein L2 OS=Salmonella typhimurium GN=rplB PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 3.587e-18
Identity = 53/133 (39.85%), Postives = 73/133 (54.89%), Query Frame = 3
Query:    9 VYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIG 407
            +  G  A +  GN LP+R+IP G+ V NVE   G  G LAR++G Y  I++   D     ++L SG  + + + CRA +G+V       + L KAG A       R   P VRG AMNPV+HPHGGG  ++ G
Sbjct:  116 IQSGVDAAIKAGNTLPMRNIPVGSTVHNVEMKPGKGGQLARSAGTYVQIVAR--DGAYVTLRLRSGEMRKVEADCRATLGEVGNAEHMLRVLGKAGAARW-----RGVRPTVRGTAMNPVDHPHGGGEGRNFG 241          
The following BLAST results are available for this feature:
BLAST of CF832064 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL2_BORBU2.747e-1841.5450S ribosomal protein L2 OS=Borrelia burgdorferi G... [more]
RK2_HUPLU2.747e-1843.3150S ribosomal protein L2, chloroplastic OS=Huperzi... [more]
RK2_GOSHI2.747e-1838.9350S ribosomal protein L2, chloroplastic OS=Gossypi... [more]
RK2_GOSBA2.747e-1838.9350S ribosomal protein L2, chloroplastic OS=Gossypi... [more]
RK2_ARATH2.747e-1838.9350S ribosomal protein L2, chloroplastic OS=Arabido... [more]
RK2B_SOYBN2.747e-1838.9350S ribosomal protein L2-B, chloroplastic OS=Glyci... [more]
RK2A_SOYBN2.747e-1838.9350S ribosomal protein L2-A, chloroplastic OS=Glyci... [more]
RL2_THEPX3.587e-1840.4450S ribosomal protein L2 OS=Thermoanaerobacter sp.... [more]
RL2_THEP33.587e-1840.4450S ribosomal protein L2 OS=Thermoanaerobacter pse... [more]
RL2_SALTY3.587e-1839.8550S ribosomal protein L2 OS=Salmonella typhimurium... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS02_01E03_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01E03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832064 ID=CF832064; Name=CF832064; organism=Citrus sinensis; type=EST; length=749bp
GTCAGTTCGTGTACTGCGGCAAGAAAGCCACTCTGATGGTTGGTAATGTG
TTGCCCGTTAGATCTATCCCTGAAGGAGCTGTCGTTTGCAACGTTGAGCA
TCATGTTGGTGATCGCGGTGTTCTCGCTAGAGCTTCTGGTGATTATGCCG
TTATCATCAGTCATAACCCCGATAATGACACCACCAGGGTCAAGCTTCCA
TCTGGTGCCAAAAAGATTATTCCAAGTGGCTGCAGAGCTATGATTGGGCA
GGTTGCCGGCGGAGGGAGGACTGAGAAGCCCCTTCTCAAAGCTGGTAATG
CATACCACAAATTCAGAGTGAAGCGAAACTGCTGGCCTAAGGTGCGTGGT
GTGGCCATGAACCCAGTGGAGCATCCTCATGGAGGAGGTAACCACCAGCA
CATTGGTCATGCTAGCACTGTTAGGCGTGATGCTCCCCCTGGCCAGAAGG
TTGGTCTTATTGCAGCCAGGAGGACTGGTCGGCTCAGAGGACAAGCTGCT
GCCACTGCAGCCAAGGCCGACAAGGCTTAAATCCTTTGTGTTACCACAAA
TCGTCTCTCTATCGCGATCTGTCATTTTACTTTTCCTGCTGCATCATTAC
CTTGGAAAAATTTGTTCAGATTTGGATCTCTGGGATGATCCTGATGTTAA
ATTATGTTGGCTTAAAGTTTAGCTTAATTTGCTCTTATCCAAAACTTTAG
TTGATTTTGATATTTTTGGATATATTAATGGATGCCTTCATCGAATTAA
back to top