CF832064

Overview
NameCF832064
Unique NameCF832064
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length749
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CF832064 vs. ExPASy Swiss-Prot
Match: RL2_SALTI (50S ribosomal protein L2 OS=Salmonella typhi GN=rplB PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 3.587e-18
Identity = 53/133 (39.85%), Postives = 73/133 (54.89%), Query Frame = 3 
Query:    9 VYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIG 407
            +  G  A +  GN LP+R+IP G+ V NVE   G  G LAR++G Y  I++   D     ++L SG  + + + CRA +G+V       + L KAG A       R   P VRG AMNPV+HPHGGG  ++ G
Sbjct:  116 IQSGVDAAIKAGNTLPMRNIPVGSTVHNVEMKPGKGGQLARSAGTYVQIVAR--DGAYVTLRLRSGEMRKVEADCRATLGEVGNAEHMLRVLGKAGAARW-----RGVRPTVRGTAMNPVDHPHGGGEGRNFG 241
[Close]
BLAST of CF832064 vs. ExPASy Swiss-Prot
Match: RL2_SALSV (50S ribosomal protein L2 OS=Salmonella schwarzengrund (strain CVM19633) GN=rplB PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 3.587e-18
Identity = 53/133 (39.85%), Postives = 73/133 (54.89%), Query Frame = 3 
Query:    9 VYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIG 407
            +  G  A +  GN LP+R+IP G+ V NVE   G  G LAR++G Y  I++   D     ++L SG  + + + CRA +G+V       + L KAG A       R   P VRG AMNPV+HPHGGG  ++ G
Sbjct:  116 IQSGVDAAIKAGNTLPMRNIPVGSTVHNVEMKPGKGGQLARSAGTYVQIVAR--DGAYVTLRLRSGEMRKVEADCRATLGEVGNAEHMLRVLGKAGAARW-----RGVRPTVRGTAMNPVDHPHGGGEGRNFG 241
[Close]
BLAST of CF832064 vs. ExPASy Swiss-Prot
Match: RL2_SALPK (50S ribosomal protein L2 OS=Salmonella paratyphi A (strain AKU_12601) GN=rplB PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 3.587e-18
Identity = 53/133 (39.85%), Postives = 73/133 (54.89%), Query Frame = 3 
Query:    9 VYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIG 407
            +  G  A +  GN LP+R+IP G+ V NVE   G  G LAR++G Y  I++   D     ++L SG  + + + CRA +G+V       + L KAG A       R   P VRG AMNPV+HPHGGG  ++ G
Sbjct:  116 IQSGVDAAIKAGNTLPMRNIPVGSTVHNVEMKPGKGGQLARSAGTYVQIVAR--DGAYVTLRLRSGEMRKVEADCRATLGEVGNAEHMLRVLGKAGAARW-----RGVRPTVRGTAMNPVDHPHGGGEGRNFG 241
[Close]
BLAST of CF832064 vs. ExPASy Swiss-Prot
Match: RL2_SALPB (50S ribosomal protein L2 OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) GN=rplB PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 3.587e-18
Identity = 53/133 (39.85%), Postives = 73/133 (54.89%), Query Frame = 3 
Query:    9 VYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIG 407
            +  G  A +  GN LP+R+IP G+ V NVE   G  G LAR++G Y  I++   D     ++L SG  + + + CRA +G+V       + L KAG A       R   P VRG AMNPV+HPHGGG  ++ G
Sbjct:  116 IQSGVDAAIKAGNTLPMRNIPVGSTVHNVEMKPGKGGQLARSAGTYVQIVAR--DGAYVTLRLRSGEMRKVEADCRATLGEVGNAEHMLRVLGKAGAARW-----RGVRPTVRGTAMNPVDHPHGGGEGRNFG 241
[Close]
BLAST of CF832064 vs. ExPASy Swiss-Prot
Match: RL2_SALPA (50S ribosomal protein L2 OS=Salmonella paratyphi A GN=rplB PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 3.587e-18
Identity = 53/133 (39.85%), Postives = 73/133 (54.89%), Query Frame = 3 
Query:    9 VYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIG 407
            +  G  A +  GN LP+R+IP G+ V NVE   G  G LAR++G Y  I++   D     ++L SG  + + + CRA +G+V       + L KAG A       R   P VRG AMNPV+HPHGGG  ++ G
Sbjct:  116 IQSGVDAAIKAGNTLPMRNIPVGSTVHNVEMKPGKGGQLARSAGTYVQIVAR--DGAYVTLRLRSGEMRKVEADCRATLGEVGNAEHMLRVLGKAGAARW-----RGVRPTVRGTAMNPVDHPHGGGEGRNFG 241
[Close]
BLAST of CF832064 vs. ExPASy Swiss-Prot
Match: RL2_SALNS (50S ribosomal protein L2 OS=Salmonella newport (strain SL254) GN=rplB PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 3.587e-18
Identity = 53/133 (39.85%), Postives = 73/133 (54.89%), Query Frame = 3 
Query:    9 VYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIG 407
            +  G  A +  GN LP+R+IP G+ V NVE   G  G LAR++G Y  I++   D     ++L SG  + + + CRA +G+V       + L KAG A       R   P VRG AMNPV+HPHGGG  ++ G
Sbjct:  116 IQSGVDAAIKAGNTLPMRNIPVGSTVHNVEMKPGKGGQLARSAGTYVQIVAR--DGAYVTLRLRSGEMRKVEADCRATLGEVGNAEHMLRVLGKAGAARW-----RGVRPTVRGTAMNPVDHPHGGGEGRNFG 241
[Close]
BLAST of CF832064 vs. ExPASy Swiss-Prot
Match: RL2_SALHS (50S ribosomal protein L2 OS=Salmonella heidelberg (strain SL476) GN=rplB PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 3.587e-18
Identity = 53/133 (39.85%), Postives = 73/133 (54.89%), Query Frame = 3 
Query:    9 VYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIG 407
            +  G  A +  GN LP+R+IP G+ V NVE   G  G LAR++G Y  I++   D     ++L SG  + + + CRA +G+V       + L KAG A       R   P VRG AMNPV+HPHGGG  ++ G
Sbjct:  116 IQSGVDAAIKAGNTLPMRNIPVGSTVHNVEMKPGKGGQLARSAGTYVQIVAR--DGAYVTLRLRSGEMRKVEADCRATLGEVGNAEHMLRVLGKAGAARW-----RGVRPTVRGTAMNPVDHPHGGGEGRNFG 241
[Close]
BLAST of CF832064 vs. ExPASy Swiss-Prot
Match: RL2_SALG2 (50S ribosomal protein L2 OS=Salmonella gallinarum (strain 287/91 / NCTC 13346) GN=rplB PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 3.587e-18
Identity = 53/133 (39.85%), Postives = 73/133 (54.89%), Query Frame = 3 
Query:    9 VYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIG 407
            +  G  A +  GN LP+R+IP G+ V NVE   G  G LAR++G Y  I++   D     ++L SG  + + + CRA +G+V       + L KAG A       R   P VRG AMNPV+HPHGGG  ++ G
Sbjct:  116 IQSGVDAAIKAGNTLPMRNIPVGSTVHNVEMKPGKGGQLARSAGTYVQIVAR--DGAYVTLRLRSGEMRKVEADCRATLGEVGNAEHMLRVLGKAGAARW-----RGVRPTVRGTAMNPVDHPHGGGEGRNFG 241
[Close]
BLAST of CF832064 vs. ExPASy Swiss-Prot
Match: RL2_SALEP (50S ribosomal protein L2 OS=Salmonella enteritidis PT4 (strain P125109) GN=rplB PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 3.587e-18
Identity = 53/133 (39.85%), Postives = 73/133 (54.89%), Query Frame = 3 
Query:    9 VYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIG 407
            +  G  A +  GN LP+R+IP G+ V NVE   G  G LAR++G Y  I++   D     ++L SG  + + + CRA +G+V       + L KAG A       R   P VRG AMNPV+HPHGGG  ++ G
Sbjct:  116 IQSGVDAAIKAGNTLPMRNIPVGSTVHNVEMKPGKGGQLARSAGTYVQIVAR--DGAYVTLRLRSGEMRKVEADCRATLGEVGNAEHMLRVLGKAGAARW-----RGVRPTVRGTAMNPVDHPHGGGEGRNFG 241
[Close]
BLAST of CF832064 vs. ExPASy Swiss-Prot
Match: RL2_SALDC (50S ribosomal protein L2 OS=Salmonella dublin (strain CT_02021853) GN=rplB PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 3.587e-18
Identity = 53/133 (39.85%), Postives = 73/133 (54.89%), Query Frame = 3 
Query:    9 VYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIG 407
            +  G  A +  GN LP+R+IP G+ V NVE   G  G LAR++G Y  I++   D     ++L SG  + + + CRA +G+V       + L KAG A       R   P VRG AMNPV+HPHGGG  ++ G
Sbjct:  116 IQSGVDAAIKAGNTLPMRNIPVGSTVHNVEMKPGKGGQLARSAGTYVQIVAR--DGAYVTLRLRSGEMRKVEADCRATLGEVGNAEHMLRVLGKAGAARW-----RGVRPTVRGTAMNPVDHPHGGGEGRNFG 241
The following BLAST results are available for this feature:
BLAST of CF832064 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL2_SALTI3.587e-1839.8550S ribosomal protein L2 OS=Salmonella typhi GN=rp... [more]
RL2_SALSV3.587e-1839.8550S ribosomal protein L2 OS=Salmonella schwarzengr... [more]
RL2_SALPK3.587e-1839.8550S ribosomal protein L2 OS=Salmonella paratyphi A... [more]
RL2_SALPB3.587e-1839.8550S ribosomal protein L2 OS=Salmonella paratyphi B... [more]
RL2_SALPA3.587e-1839.8550S ribosomal protein L2 OS=Salmonella paratyphi A... [more]
RL2_SALNS3.587e-1839.8550S ribosomal protein L2 OS=Salmonella newport (st... [more]
RL2_SALHS3.587e-1839.8550S ribosomal protein L2 OS=Salmonella heidelberg ... [more]
RL2_SALG23.587e-1839.8550S ribosomal protein L2 OS=Salmonella gallinarum ... [more]
RL2_SALEP3.587e-1839.8550S ribosomal protein L2 OS=Salmonella enteritidis... [more]
RL2_SALDC3.587e-1839.8550S ribosomal protein L2 OS=Salmonella dublin (str... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_01E03_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01E03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832064 ID=CF832064; Name=CF832064; organism=Citrus sinensis; type=EST; length=749bp
GTCAGTTCGTGTACTGCGGCAAGAAAGCCACTCTGATGGTTGGTAATGTG
TTGCCCGTTAGATCTATCCCTGAAGGAGCTGTCGTTTGCAACGTTGAGCA
TCATGTTGGTGATCGCGGTGTTCTCGCTAGAGCTTCTGGTGATTATGCCG
TTATCATCAGTCATAACCCCGATAATGACACCACCAGGGTCAAGCTTCCA
TCTGGTGCCAAAAAGATTATTCCAAGTGGCTGCAGAGCTATGATTGGGCA
GGTTGCCGGCGGAGGGAGGACTGAGAAGCCCCTTCTCAAAGCTGGTAATG
CATACCACAAATTCAGAGTGAAGCGAAACTGCTGGCCTAAGGTGCGTGGT
GTGGCCATGAACCCAGTGGAGCATCCTCATGGAGGAGGTAACCACCAGCA
CATTGGTCATGCTAGCACTGTTAGGCGTGATGCTCCCCCTGGCCAGAAGG
TTGGTCTTATTGCAGCCAGGAGGACTGGTCGGCTCAGAGGACAAGCTGCT
GCCACTGCAGCCAAGGCCGACAAGGCTTAAATCCTTTGTGTTACCACAAA
TCGTCTCTCTATCGCGATCTGTCATTTTACTTTTCCTGCTGCATCATTAC
CTTGGAAAAATTTGTTCAGATTTGGATCTCTGGGATGATCCTGATGTTAA
ATTATGTTGGCTTAAAGTTTAGCTTAATTTGCTCTTATCCAAAACTTTAG
TTGATTTTGATATTTTTGGATATATTAATGGATGCCTTCATCGAATTAA
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