CF832064

Overview
NameCF832064
Unique NameCF832064
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length749
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF832064 vs. ExPASy Swiss-Prot
Match: RK2_MARPO (50S ribosomal protein L2, chloroplastic OS=Marchantia polymorpha GN=rpl2 PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 3.358e-16
Identity = 48/127 (37.80%), Postives = 73/127 (57.48%), Query Frame = 3
Query:    9 VYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGG 389
            +   ++A +++GN LP+ ++P G  + N+E   G  G L RA+G  A II+   +     ++LPSG  ++I   C A IGQ+   G  +   L+ G A  K  + +   PKVRGV MNP++HPHGGG
Sbjct:  116 IISSEEAPILIGNTLPLTNMPLGTAIHNIEITPGKGGQLVRAAGTVAKIIAK--EGQLVTLRLPSGEIRLISQKCLATIGQI---GNVDVNNLRIGKAGSKRWLGKR--PKVRGVVMNPIDHPHGGG 235          
BLAST of CF832064 vs. ExPASy Swiss-Prot
Match: RM02_RECAM (60S ribosomal protein L2, mitochondrial OS=Reclinomonas americana GN=RPL2 PE=3 SV=2)

HSP 1 Score: 85.1149 bits (209), Expect = 4.385e-16
Identity = 51/138 (36.96%), Postives = 79/138 (57.25%), Query Frame = 3
Query:    9 VYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTV 422
            V  G    + +GN LP+R+IP G ++ N+E + G  G + R++G  A +IS + +N    +KLPSG  ++ P+   A IG ++        + KAG +  ++  +R   P VRGVAMNPV+HPHGGG  +  G   +V
Sbjct:  116 VITGNDIDIRIGNTLPLRNIPIGTMIHNIELNPGKGGKIVRSAGSSAQLISKD-ENGFCMLKLPSGEYRLFPNNSLATIGILSNIDNKNIKIGKAGRS--RWMGRR---PIVRGVAMNPVDHPHGGGEGKTSGGRPSV 247          
BLAST of CF832064 vs. ExPASy Swiss-Prot
Match: RL2_SHEPW (50S ribosomal protein L2 OS=Shewanella piezotolerans (strain WP3 / JCM 13877) GN=rplB PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 4.385e-16
Identity = 51/133 (38.35%), Postives = 72/133 (54.14%), Query Frame = 3
Query:    9 VYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIG 407
            +  G  A +  GN +P+R+IP G+VV  VE   G    +AR++G Y  +I+   D     ++L SG  + +P  CRA +G+V       + L KAG      +  R   P VRGVAMNPV+HPHGGG  +  G
Sbjct:  116 IQSGIDAEIKSGNAMPLRNIPVGSVVHAVEMKPGKGAQIARSAGAYVQVIAR--DGAYATLRLRSGEMRKVPVDCRATLGEVGNAEHMLRQLGKAGA-----KRWRGVRPTVRGVAMNPVDHPHGGGEGRTSG 241          
BLAST of CF832064 vs. ExPASy Swiss-Prot
Match: RL2_SHEHH (50S ribosomal protein L2 OS=Shewanella halifaxensis (strain HAW-EB4) GN=rplB PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 4.385e-16
Identity = 51/133 (38.35%), Postives = 72/133 (54.14%), Query Frame = 3
Query:    9 VYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIG 407
            +  G  A +  GN +P+R+IP G+VV  VE   G    +AR++G Y  +I+   D     ++L SG  + +P  CRA +G+V       + L KAG      +  R   P VRGVAMNPV+HPHGGG  +  G
Sbjct:  116 IQSGIDAEIKSGNAMPLRNIPVGSVVHAVEMKPGKGAQIARSAGAYVQVIAR--DGAYATLRLRSGEMRKVPVDCRATLGEVGNAEHMLRQLGKAGA-----KRWRGVRPTVRGVAMNPVDHPHGGGEGRTSG 241          
BLAST of CF832064 vs. ExPASy Swiss-Prot
Match: RL2_SHEB9 (50S ribosomal protein L2 OS=Shewanella baltica (strain OS195) GN=rplB PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 4.385e-16
Identity = 50/133 (37.59%), Postives = 71/133 (53.38%), Query Frame = 3
Query:    9 VYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIG 407
            +  G  A +  GN +P+R+IP G+VV  VE   G    +AR++G Y  +++   D     ++L SG  + +P  CRA  G+V       + L KAG      +  R   P VRGVAMNPV+HPHGGG  +  G
Sbjct:  116 IQSGVAAEIKTGNAMPLRNIPVGSVVHAVEMKPGKGAQIARSAGAYVQVVAR--DGAYATLRLRSGEMRKVPVDCRATFGEVGNAEHMLRQLGKAGA-----KRWRGIRPTVRGVAMNPVDHPHGGGEGRTSG 241          
BLAST of CF832064 vs. ExPASy Swiss-Prot
Match: RL2_SHEB8 (50S ribosomal protein L2 OS=Shewanella baltica (strain OS185) GN=rplB PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 4.385e-16
Identity = 50/133 (37.59%), Postives = 71/133 (53.38%), Query Frame = 3
Query:    9 VYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIG 407
            +  G  A +  GN +P+R+IP G+VV  VE   G    +AR++G Y  +++   D     ++L SG  + +P  CRA  G+V       + L KAG      +  R   P VRGVAMNPV+HPHGGG  +  G
Sbjct:  116 IQSGVAAEIKTGNAMPLRNIPVGSVVHAVEMKPGKGAQIARSAGAYVQVVAR--DGAYATLRLRSGEMRKVPVDCRATFGEVGNAEHMLRQLGKAGA-----KRWRGIRPTVRGVAMNPVDHPHGGGEGRTSG 241          
BLAST of CF832064 vs. ExPASy Swiss-Prot
Match: RL2_SHEB5 (50S ribosomal protein L2 OS=Shewanella baltica (strain OS155 / ATCC BAA-1091) GN=rplB PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 4.385e-16
Identity = 50/133 (37.59%), Postives = 71/133 (53.38%), Query Frame = 3
Query:    9 VYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIG 407
            +  G  A +  GN +P+R+IP G+VV  VE   G    +AR++G Y  +++   D     ++L SG  + +P  CRA  G+V       + L KAG      +  R   P VRGVAMNPV+HPHGGG  +  G
Sbjct:  116 IQSGVAAEIKTGNAMPLRNIPVGSVVHAVEMKPGKGAQIARSAGAYVQVVAR--DGAYATLRLRSGEMRKVPVDCRATFGEVGNAEHMLRQLGKAGA-----KRWRGIRPTVRGVAMNPVDHPHGGGEGRTSG 241          
BLAST of CF832064 vs. ExPASy Swiss-Prot
Match: RL2_SHEB2 (50S ribosomal protein L2 OS=Shewanella baltica (strain OS223) GN=rplB PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 4.385e-16
Identity = 50/133 (37.59%), Postives = 71/133 (53.38%), Query Frame = 3
Query:    9 VYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIG 407
            +  G  A +  GN +P+R+IP G+VV  VE   G    +AR++G Y  +++   D     ++L SG  + +P  CRA  G+V       + L KAG      +  R   P VRGVAMNPV+HPHGGG  +  G
Sbjct:  116 IQSGVAAEIKTGNAMPLRNIPVGSVVHAVEMKPGKGAQIARSAGAYVQVVAR--DGAYATLRLRSGEMRKVPVDCRATFGEVGNAEHMLRQLGKAGA-----KRWRGIRPTVRGVAMNPVDHPHGGGEGRTSG 241          
BLAST of CF832064 vs. ExPASy Swiss-Prot
Match: RL2_PSEHT (50S ribosomal protein L2 OS=Pseudoalteromonas haloplanktis (strain TAC 125) GN=rplB PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 4.385e-16
Identity = 51/134 (38.06%), Postives = 73/134 (54.48%), Query Frame = 3
Query:    9 VYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAG-NAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIG 407
            +  G  A +  GN LP+R++P G+ V NVE   G    +AR++G Y  I++   D     ++L SG  + + + CRA +G+V       + L KAG N +   R      P VRGVAMNPV+HPHGGG  +  G
Sbjct:  116 IQSGVDAPIKPGNALPMRNMPVGSTVHNVELKPGKGAQIARSAGAYVQILAR--DGQYVTLRLRSGEVRKVEADCRATLGEVGNAEHMLRSLGKAGANRWRGIR------PTVRGVAMNPVDHPHGGGEGRTSG 241          
BLAST of CF832064 vs. ExPASy Swiss-Prot
Match: RL2_OCEIH (50S ribosomal protein L2 OS=Oceanobacillus iheyensis GN=rplB PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 4.385e-16
Identity = 54/133 (40.60%), Postives = 74/133 (55.64%), Query Frame = 3
Query:    3 QFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCW----PKVRGVAMNPVEHPHGGG 389
            Q +  G+ A + +GN LP+ SIP G V+ N+E   G  G +AR++G  A I+    +   T V+L SG  ++I + CRA IGQV   G  E  L++ G A       R+ W    P VRG  MNP +HPHGGG
Sbjct:  114 QEIESGENADIKLGNALPLGSIPVGTVIHNIELKPGRGGQIARSAGAEAQILGR--EEKYTLVRLSSGEVRLILTTCRATIGQV---GNIEHELVRVGKA------GRSRWKGIRPTVRGSVMNPNDHPHGGG 235          
The following BLAST results are available for this feature:
BLAST of CF832064 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RK2_MARPO3.358e-1637.8050S ribosomal protein L2, chloroplastic OS=Marchan... [more]
RM02_RECAM4.385e-1636.9660S ribosomal protein L2, mitochondrial OS=Reclino... [more]
RL2_SHEPW4.385e-1638.3550S ribosomal protein L2 OS=Shewanella piezotolera... [more]
RL2_SHEHH4.385e-1638.3550S ribosomal protein L2 OS=Shewanella halifaxensi... [more]
RL2_SHEB94.385e-1637.5950S ribosomal protein L2 OS=Shewanella baltica (st... [more]
RL2_SHEB84.385e-1637.5950S ribosomal protein L2 OS=Shewanella baltica (st... [more]
RL2_SHEB54.385e-1637.5950S ribosomal protein L2 OS=Shewanella baltica (st... [more]
RL2_SHEB24.385e-1637.5950S ribosomal protein L2 OS=Shewanella baltica (st... [more]
RL2_PSEHT4.385e-1638.0650S ribosomal protein L2 OS=Pseudoalteromonas halo... [more]
RL2_OCEIH4.385e-1640.6050S ribosomal protein L2 OS=Oceanobacillus iheyens... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_01E03_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01E03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832064 ID=CF832064; Name=CF832064; organism=Citrus sinensis; type=EST; length=749bp
GTCAGTTCGTGTACTGCGGCAAGAAAGCCACTCTGATGGTTGGTAATGTG
TTGCCCGTTAGATCTATCCCTGAAGGAGCTGTCGTTTGCAACGTTGAGCA
TCATGTTGGTGATCGCGGTGTTCTCGCTAGAGCTTCTGGTGATTATGCCG
TTATCATCAGTCATAACCCCGATAATGACACCACCAGGGTCAAGCTTCCA
TCTGGTGCCAAAAAGATTATTCCAAGTGGCTGCAGAGCTATGATTGGGCA
GGTTGCCGGCGGAGGGAGGACTGAGAAGCCCCTTCTCAAAGCTGGTAATG
CATACCACAAATTCAGAGTGAAGCGAAACTGCTGGCCTAAGGTGCGTGGT
GTGGCCATGAACCCAGTGGAGCATCCTCATGGAGGAGGTAACCACCAGCA
CATTGGTCATGCTAGCACTGTTAGGCGTGATGCTCCCCCTGGCCAGAAGG
TTGGTCTTATTGCAGCCAGGAGGACTGGTCGGCTCAGAGGACAAGCTGCT
GCCACTGCAGCCAAGGCCGACAAGGCTTAAATCCTTTGTGTTACCACAAA
TCGTCTCTCTATCGCGATCTGTCATTTTACTTTTCCTGCTGCATCATTAC
CTTGGAAAAATTTGTTCAGATTTGGATCTCTGGGATGATCCTGATGTTAA
ATTATGTTGGCTTAAAGTTTAGCTTAATTTGCTCTTATCCAAAACTTTAG
TTGATTTTGATATTTTTGGATATATTAATGGATGCCTTCATCGAATTAA
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