CF832064

Overview
NameCF832064
Unique NameCF832064
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length749
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF832064 vs. ExPASy Swiss-Prot
Match: RL2_NEIMA (50S ribosomal protein L2 OS=Neisseria meningitidis serogroup A GN=rplB PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 9.769e-16
Identity = 50/125 (40.00%), Postives = 72/125 (57.60%), Query Frame = 3
Query:   18 GKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAG-NAYHKFRVKRNCWPKVRGVAMNPVEHPHGGG 389
            G +A + VGN LP+R+IP G  +  +E   G    +AR++G  AV+++   +    +V+L SG  + I   CRA IG+V    ++ K + KAG N +   R      P VRGV MNPV+HPHGGG
Sbjct:  119 GAEAAIKVGNTLPIRNIPVGTTIHCIEMKPGKGAQIARSAGASAVLLA--KEGAYAQVRLRSGEVRKINVNCRATIGEVGNEEQSLKKIGKAGANRWRGIR------PTVRGVVMNPVDHPHGGG 235          
BLAST of CF832064 vs. ExPASy Swiss-Prot
Match: RL2_DESAD (50S ribosomal protein L2 OS=Desulfovibrio salexigens (strain ATCC 14822 / DSM 2638 / NCIB 8403 / VKM B-1763) GN=rplB PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 9.769e-16
Identity = 51/137 (37.23%), Postives = 74/137 (54.01%), Query Frame = 3
Query:    9 VYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCW----PKVRGVAMNPVEHPHGGGNHQHIG 407
            +  G+KA +  GN L +++IP G +V N+E + G  G   RA+G YA +I+   +     +++PSG  + + + C A +GQV         L KAG         RN W    PKVRGVAMNP++HP GGG  +  G
Sbjct:  116 ILAGEKADIKPGNALLLKNIPVGTIVHNIELYPGKGGQFCRAAGTYAQLIA--KEGKYALLRMPSGEVRKVLATCCATVGQVGNIHHENITLGKAG---------RNRWLGRRPKVRGVAMNPIDHPLGGGEGRSSG 241          
BLAST of CF832064 vs. ExPASy Swiss-Prot
Match: RL2_CYAP4 (50S ribosomal protein L2 OS=Cyanothece sp. (strain PCC 7425 / ATCC 29141) GN=rplB PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 9.769e-16
Identity = 52/131 (39.69%), Postives = 67/131 (51.15%), Query Frame = 3
Query:    9 VYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCW----PKVRGVAMNPVEHPHGGG 389
            +  G  A + VGN LP+  IP G  V NVE   G  G + RA+G  A +++   + D   +KLPSG  ++    C A IGQ+         + KAG         RN W    PKVRG  MNPV+HPHGGG
Sbjct:  116 IAAGPDAAIEVGNALPLSKIPLGTGVHNVEITPGRGGQMVRAAGAMAQVVA--KEGDMVTLKLPSGEVRLFRKECYATIGQIGNVDVNNISIGKAG---------RNRWKGRRPKVRGSVMNPVDHPHGGG 235          
BLAST of CF832064 vs. ExPASy Swiss-Prot
Match: RL2_CAUSK (50S ribosomal protein L2 OS=Caulobacter sp. (strain K31) GN=rplB PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 9.769e-16
Identity = 50/144 (34.72%), Postives = 74/144 (51.39%), Query Frame = 3
Query:    9 VYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPP 440
            V    K  +  GN  P+R++P G ++ NVE      G +AR++G YA ++    D    +++L SG  +++   C A +G V+    + + L KAG   H  R      P VRGVAMNPV+HPHGGG  +  G  + V     P
Sbjct:  116 VVTADKVDVKPGNTSPLRTMPIGTIIHNVELKPAKGGQIARSAGAYAQLVGR--DAGYAQIRLNSGELRMVLDTCLATVGAVSNPDHSNQNLGKAGRVRHMGRR-----PHVRGVAMNPVDHPHGGGEGRTSGGRNPVTPAGKP 252          
BLAST of CF832064 vs. ExPASy Swiss-Prot
Match: RL2_BACHK (50S ribosomal protein L2 OS=Bacillus thuringiensis subsp. konkukian GN=rplB PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 9.769e-16
Identity = 51/131 (38.93%), Postives = 71/131 (54.20%), Query Frame = 3
Query:    9 VYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCW----PKVRGVAMNPVEHPHGGG 389
            +  G +A + +GN LP+ +IP G VV N+E   G  G L R++G  A ++    +     V+L SG  +++ S CRA +GQV   G     L+K G A       R+ W    P VRG  MNPV+HPHGGG
Sbjct:  116 IMSGAEADIKIGNALPLINIPVGTVVHNIELKPGRGGQLVRSAGTSAQVL--GKEGKYVLVRLTSGEVRLVLSACRATVGQV---GNESHELIKIGKA------GRSRWLGKRPTVRGSVMNPVDHPHGGG 235          
BLAST of CF832064 vs. ExPASy Swiss-Prot
Match: RL2_BACHD (50S ribosomal protein L2 OS=Bacillus halodurans GN=rplB PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 9.769e-16
Identity = 53/128 (41.41%), Postives = 71/128 (55.47%), Query Frame = 3
Query:   18 GKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCW----PKVRGVAMNPVEHPHGGG 389
            G +A + VGN LP+++IP G V+ N+E   G  G L R++G  A ++    + D   V+L SG  + I + CRA IGQV   G  E  L+  G A       R+ W    P VRG AMNP +HPHGGG
Sbjct:  119 GPEADIKVGNALPLKNIPVGTVIHNIELKPGKGGQLVRSAGAEAQLL--GKEGDYVLVRLNSGETRYILATCRATIGQV---GNLEHELVNIGKA------GRSRWLGKRPTVRGSAMNPNDHPHGGG 235          
BLAST of CF832064 vs. ExPASy Swiss-Prot
Match: RL2_BACCZ (50S ribosomal protein L2 OS=Bacillus cereus (strain ZK / E33L) GN=rplB PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 9.769e-16
Identity = 51/131 (38.93%), Postives = 71/131 (54.20%), Query Frame = 3
Query:    9 VYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCW----PKVRGVAMNPVEHPHGGG 389
            +  G +A + +GN LP+ +IP G VV N+E   G  G L R++G  A ++    +     V+L SG  +++ S CRA +GQV   G     L+K G A       R+ W    P VRG  MNPV+HPHGGG
Sbjct:  116 IMSGAEADIKIGNALPLINIPVGTVVHNIELKPGRGGQLVRSAGTSAQVL--GKEGKYVLVRLTSGEVRLVLSACRATVGQV---GNESHELIKIGKA------GRSRWLGKRPTVRGSVMNPVDHPHGGG 235          
BLAST of CF832064 vs. ExPASy Swiss-Prot
Match: RL2_BACCQ (50S ribosomal protein L2 OS=Bacillus cereus (strain Q1) GN=rplB PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 9.769e-16
Identity = 51/131 (38.93%), Postives = 71/131 (54.20%), Query Frame = 3
Query:    9 VYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCW----PKVRGVAMNPVEHPHGGG 389
            +  G +A + +GN LP+ +IP G VV N+E   G  G L R++G  A ++    +     V+L SG  +++ S CRA +GQV   G     L+K G A       R+ W    P VRG  MNPV+HPHGGG
Sbjct:  116 IMSGAEADIKIGNALPLINIPVGTVVHNIELKPGRGGQLVRSAGTSAQVL--GKEGKYVLVRLTSGEVRLVLSACRAAVGQV---GNESHELIKIGKA------GRSRWLGKRPTVRGSVMNPVDHPHGGG 235          
BLAST of CF832064 vs. ExPASy Swiss-Prot
Match: RL2_BACC7 (50S ribosomal protein L2 OS=Bacillus cereus (strain AH187) GN=rplB PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 9.769e-16
Identity = 51/131 (38.93%), Postives = 71/131 (54.20%), Query Frame = 3
Query:    9 VYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCW----PKVRGVAMNPVEHPHGGG 389
            +  G +A + +GN LP+ +IP G VV N+E   G  G L R++G  A ++    +     V+L SG  +++ S CRA +GQV   G     L+K G A       R+ W    P VRG  MNPV+HPHGGG
Sbjct:  116 IMSGAEADIKIGNALPLINIPVGTVVHNIELKPGRGGQLVRSAGTSAQVL--GKEGKYVLVRLTSGEVRLVLSACRATVGQV---GNESHELIKIGKA------GRSRWLGKRPTVRGSVMNPVDHPHGGG 235          
BLAST of CF832064 vs. ExPASy Swiss-Prot
Match: RL2_BACC3 (50S ribosomal protein L2 OS=Bacillus cereus (strain 03BB102) GN=rplB PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 9.769e-16
Identity = 51/131 (38.93%), Postives = 71/131 (54.20%), Query Frame = 3
Query:    9 VYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCW----PKVRGVAMNPVEHPHGGG 389
            +  G +A + +GN LP+ +IP G VV N+E   G  G L R++G  A ++    +     V+L SG  +++ S CRA +GQV   G     L+K G A       R+ W    P VRG  MNPV+HPHGGG
Sbjct:  116 IMSGAEADIKIGNALPLINIPVGTVVHNIELKPGRGGQLVRSAGTSAQVL--GKEGKYVLVRLTSGEVRLVLSACRATVGQV---GNESHELIKIGKA------GRSRWLGKRPTVRGSVMNPVDHPHGGG 235          
The following BLAST results are available for this feature:
BLAST of CF832064 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL2_NEIMA9.769e-1640.0050S ribosomal protein L2 OS=Neisseria meningitidis... [more]
RL2_DESAD9.769e-1637.2350S ribosomal protein L2 OS=Desulfovibrio salexige... [more]
RL2_CYAP49.769e-1639.6950S ribosomal protein L2 OS=Cyanothece sp. (strain... [more]
RL2_CAUSK9.769e-1634.7250S ribosomal protein L2 OS=Caulobacter sp. (strai... [more]
RL2_BACHK9.769e-1638.9350S ribosomal protein L2 OS=Bacillus thuringiensis... [more]
RL2_BACHD9.769e-1641.4150S ribosomal protein L2 OS=Bacillus halodurans GN... [more]
RL2_BACCZ9.769e-1638.9350S ribosomal protein L2 OS=Bacillus cereus (strai... [more]
RL2_BACCQ9.769e-1638.9350S ribosomal protein L2 OS=Bacillus cereus (strai... [more]
RL2_BACC79.769e-1638.9350S ribosomal protein L2 OS=Bacillus cereus (strai... [more]
RL2_BACC39.769e-1638.9350S ribosomal protein L2 OS=Bacillus cereus (strai... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_01E03_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01E03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832064 ID=CF832064; Name=CF832064; organism=Citrus sinensis; type=EST; length=749bp
GTCAGTTCGTGTACTGCGGCAAGAAAGCCACTCTGATGGTTGGTAATGTG
TTGCCCGTTAGATCTATCCCTGAAGGAGCTGTCGTTTGCAACGTTGAGCA
TCATGTTGGTGATCGCGGTGTTCTCGCTAGAGCTTCTGGTGATTATGCCG
TTATCATCAGTCATAACCCCGATAATGACACCACCAGGGTCAAGCTTCCA
TCTGGTGCCAAAAAGATTATTCCAAGTGGCTGCAGAGCTATGATTGGGCA
GGTTGCCGGCGGAGGGAGGACTGAGAAGCCCCTTCTCAAAGCTGGTAATG
CATACCACAAATTCAGAGTGAAGCGAAACTGCTGGCCTAAGGTGCGTGGT
GTGGCCATGAACCCAGTGGAGCATCCTCATGGAGGAGGTAACCACCAGCA
CATTGGTCATGCTAGCACTGTTAGGCGTGATGCTCCCCCTGGCCAGAAGG
TTGGTCTTATTGCAGCCAGGAGGACTGGTCGGCTCAGAGGACAAGCTGCT
GCCACTGCAGCCAAGGCCGACAAGGCTTAAATCCTTTGTGTTACCACAAA
TCGTCTCTCTATCGCGATCTGTCATTTTACTTTTCCTGCTGCATCATTAC
CTTGGAAAAATTTGTTCAGATTTGGATCTCTGGGATGATCCTGATGTTAA
ATTATGTTGGCTTAAAGTTTAGCTTAATTTGCTCTTATCCAAAACTTTAG
TTGATTTTGATATTTTTGGATATATTAATGGATGCCTTCATCGAATTAA
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