CF832064

Overview
NameCF832064
Unique NameCF832064
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length749
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF832064 vs. ExPASy Swiss-Prot
Match: RL2_BACC1 (50S ribosomal protein L2 OS=Bacillus cereus (strain ATCC 10987) GN=rplB PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 9.769e-16
Identity = 51/131 (38.93%), Postives = 71/131 (54.20%), Query Frame = 3
Query:    9 VYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCW----PKVRGVAMNPVEHPHGGG 389
            +  G +A + +GN LP+ +IP G VV N+E   G  G L R++G  A ++    +     V+L SG  +++ S CRA +GQV   G     L+K G A       R+ W    P VRG  MNPV+HPHGGG
Sbjct:  116 IMSGAEADIKIGNALPLINIPVGTVVHNIELKPGRGGQLVRSAGTSAQVL--GKEGKYVLVRLTSGEVRLVLSACRATVGQV---GNESHELIKIGKA------GRSRWLGKRPTVRGSVMNPVDHPHGGG 235          
BLAST of CF832064 vs. ExPASy Swiss-Prot
Match: RL2_BACC0 (50S ribosomal protein L2 OS=Bacillus cereus (strain AH820) GN=rplB PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 9.769e-16
Identity = 51/131 (38.93%), Postives = 71/131 (54.20%), Query Frame = 3
Query:    9 VYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCW----PKVRGVAMNPVEHPHGGG 389
            +  G +A + +GN LP+ +IP G VV N+E   G  G L R++G  A ++    +     V+L SG  +++ S CRA +GQV   G     L+K G A       R+ W    P VRG  MNPV+HPHGGG
Sbjct:  116 IMSGAEADIKIGNALPLINIPVGTVVHNIELKPGRGGQLVRSAGTSAQVL--GKEGKYVLVRLTSGEVRLVLSACRATVGQV---GNESHELIKIGKA------GRSRWLGKRPTVRGSVMNPVDHPHGGG 235          
BLAST of CF832064 vs. ExPASy Swiss-Prot
Match: RL2_BACAN (50S ribosomal protein L2 OS=Bacillus anthracis GN=rplB PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 9.769e-16
Identity = 51/131 (38.93%), Postives = 71/131 (54.20%), Query Frame = 3
Query:    9 VYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCW----PKVRGVAMNPVEHPHGGG 389
            +  G +A + +GN LP+ +IP G VV N+E   G  G L R++G  A ++    +     V+L SG  +++ S CRA +GQV   G     L+K G A       R+ W    P VRG  MNPV+HPHGGG
Sbjct:  116 IMSGAEADIKIGNALPLINIPVGTVVHNIELKPGRGGQLVRSAGTSAQVL--GKEGKYVLVRLTSGEVRLVLSACRATVGQV---GNESHELIKIGKA------GRSRWLGKRPTVRGSVMNPVDHPHGGG 235          
BLAST of CF832064 vs. ExPASy Swiss-Prot
Match: RL2_BACAH (50S ribosomal protein L2 OS=Bacillus thuringiensis (strain Al Hakam) GN=rplB PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 9.769e-16
Identity = 51/131 (38.93%), Postives = 71/131 (54.20%), Query Frame = 3
Query:    9 VYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCW----PKVRGVAMNPVEHPHGGG 389
            +  G +A + +GN LP+ +IP G VV N+E   G  G L R++G  A ++    +     V+L SG  +++ S CRA +GQV   G     L+K G A       R+ W    P VRG  MNPV+HPHGGG
Sbjct:  116 IMSGAEADIKIGNALPLINIPVGTVVHNIELKPGRGGQLVRSAGTSAQVL--GKEGKYVLVRLTSGEVRLVLSACRATVGQV---GNESHELIKIGKA------GRSRWLGKRPTVRGSVMNPVDHPHGGG 235          
BLAST of CF832064 vs. ExPASy Swiss-Prot
Match: RL2_BACAC (50S ribosomal protein L2 OS=Bacillus anthracis (strain CDC 684 / NRRL 3495) GN=rplB PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 9.769e-16
Identity = 51/131 (38.93%), Postives = 71/131 (54.20%), Query Frame = 3
Query:    9 VYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCW----PKVRGVAMNPVEHPHGGG 389
            +  G +A + +GN LP+ +IP G VV N+E   G  G L R++G  A ++    +     V+L SG  +++ S CRA +GQV   G     L+K G A       R+ W    P VRG  MNPV+HPHGGG
Sbjct:  116 IMSGAEADIKIGNALPLINIPVGTVVHNIELKPGRGGQLVRSAGTSAQVL--GKEGKYVLVRLTSGEVRLVLSACRATVGQV---GNESHELIKIGKA------GRSRWLGKRPTVRGSVMNPVDHPHGGG 235          
BLAST of CF832064 vs. ExPASy Swiss-Prot
Match: RL2_BACAA (50S ribosomal protein L2 OS=Bacillus anthracis (strain A0248) GN=rplB PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 9.769e-16
Identity = 51/131 (38.93%), Postives = 71/131 (54.20%), Query Frame = 3
Query:    9 VYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCW----PKVRGVAMNPVEHPHGGG 389
            +  G +A + +GN LP+ +IP G VV N+E   G  G L R++G  A ++    +     V+L SG  +++ S CRA +GQV   G     L+K G A       R+ W    P VRG  MNPV+HPHGGG
Sbjct:  116 IMSGAEADIKIGNALPLINIPVGTVVHNIELKPGRGGQLVRSAGTSAQVL--GKEGKYVLVRLTSGEVRLVLSACRATVGQV---GNESHELIKIGKA------GRSRWLGKRPTVRGSVMNPVDHPHGGG 235          
BLAST of CF832064 vs. ExPASy Swiss-Prot
Match: RL2_ALKMQ (50S ribosomal protein L2 OS=Alkaliphilus metalliredigens (strain QYMF) GN=rplB PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 9.769e-16
Identity = 52/141 (36.88%), Postives = 76/141 (53.90%), Query Frame = 3
Query:    3 QFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGG-NHQHIGHASTV 422
            + ++ G ++ + VGN LP+ +IP G ++ N+E   G  G +AR++G+ A +++   +     V+LPSG  + I   CRA IGQV         + KAG      + K    P VRG AMNP +HPHGGG     IG  S V
Sbjct:  114 EMIFSGPESDIKVGNALPLINIPVGTIIHNIEMKPGKGGQIARSAGNSAQLMA--KEGRYALVRLPSGEVRQILIECRATIGQVGNLDHENVTIGKAGR-----KRKMGIRPTVRGSAMNPNDHPHGGGEGRSPIGRPSPV 247          
BLAST of CF832064 vs. ExPASy Swiss-Prot
Match: RL2_ACIF5 (50S ribosomal protein L2 OS=Acidithiobacillus ferrooxidans (strain ATCC 53993) GN=rplB PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 9.769e-16
Identity = 51/133 (38.35%), Postives = 72/133 (54.14%), Query Frame = 3
Query:    9 VYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIG 407
            V   ++  +  GN +P+R IP G+VV NVE   G  G +AR++G    +++   + D  +++L SG  + I   CRA IG+V       + L KAG         R   P VRGVAMNPV+HPHGGG  +  G
Sbjct:  116 VLSAEQTPIKPGNCMPLRGIPVGSVVHNVEMRPGKGGQIARSAGASVQLMAR--EGDYAQLRLRSGEVRRIHVSCRATIGEVGNEEHGSRQLGKAGATRW-----RGVRPTVRGVAMNPVDHPHGGGEGRTSG 241          
BLAST of CF832064 vs. ExPASy Swiss-Prot
Match: RL2_ACIF2 (50S ribosomal protein L2 OS=Acidithiobacillus ferrooxidans (strain ATCC 23270 / DSM 14882 / NCIB 8455) GN=rplB PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 9.769e-16
Identity = 51/133 (38.35%), Postives = 72/133 (54.14%), Query Frame = 3
Query:    9 VYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIG 407
            V   ++  +  GN +P+R IP G+VV NVE   G  G +AR++G    +++   + D  +++L SG  + I   CRA IG+V       + L KAG         R   P VRGVAMNPV+HPHGGG  +  G
Sbjct:  116 VLSAEQTPIKPGNCMPLRGIPVGSVVHNVEMRPGKGGQIARSAGASVQLMAR--EGDYAQLRLRSGEVRRIHVSCRATIGEVGNEEHGSRQLGKAGATRW-----RGVRPTVRGVAMNPVDHPHGGGEGRTSG 241          
BLAST of CF832064 vs. ExPASy Swiss-Prot
Match: RL2_ACIBY (50S ribosomal protein L2 OS=Acinetobacter baumannii (strain AYE) GN=rplB PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 9.769e-16
Identity = 53/147 (36.05%), Postives = 80/147 (54.42%), Query Frame = 3
Query:    9 VYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQK 449
            V  G  A +  GN LP+R++P G+ + NVE  +G    LAR++G    ++    D     ++L SG  + +   CRA+IG+V+      + L KAG A       R   P VRG+AMNP++HPHGGG  ++ G    ++  +P GQK
Sbjct:  116 VQSGNDAPIRPGNCLPLRNMPIGSTLHNVELKIGKGAQLARSAGASVQLLGR--DGSYAIIRLRSGEMRKVHVECRAVIGEVSNQENNLRSLGKAGAARW-----RGVRPTVRGMAMNPIDHPHGGGEGRNKG----IQPVSPWGQK 251          
The following BLAST results are available for this feature:
BLAST of CF832064 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL2_BACC19.769e-1638.9350S ribosomal protein L2 OS=Bacillus cereus (strai... [more]
RL2_BACC09.769e-1638.9350S ribosomal protein L2 OS=Bacillus cereus (strai... [more]
RL2_BACAN9.769e-1638.9350S ribosomal protein L2 OS=Bacillus anthracis GN=... [more]
RL2_BACAH9.769e-1638.9350S ribosomal protein L2 OS=Bacillus thuringiensis... [more]
RL2_BACAC9.769e-1638.9350S ribosomal protein L2 OS=Bacillus anthracis (st... [more]
RL2_BACAA9.769e-1638.9350S ribosomal protein L2 OS=Bacillus anthracis (st... [more]
RL2_ALKMQ9.769e-1636.8850S ribosomal protein L2 OS=Alkaliphilus metallire... [more]
RL2_ACIF59.769e-1638.3550S ribosomal protein L2 OS=Acidithiobacillus ferr... [more]
RL2_ACIF29.769e-1638.3550S ribosomal protein L2 OS=Acidithiobacillus ferr... [more]
RL2_ACIBY9.769e-1636.0550S ribosomal protein L2 OS=Acinetobacter baumanni... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_01E03_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01E03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832064 ID=CF832064; Name=CF832064; organism=Citrus sinensis; type=EST; length=749bp
GTCAGTTCGTGTACTGCGGCAAGAAAGCCACTCTGATGGTTGGTAATGTG
TTGCCCGTTAGATCTATCCCTGAAGGAGCTGTCGTTTGCAACGTTGAGCA
TCATGTTGGTGATCGCGGTGTTCTCGCTAGAGCTTCTGGTGATTATGCCG
TTATCATCAGTCATAACCCCGATAATGACACCACCAGGGTCAAGCTTCCA
TCTGGTGCCAAAAAGATTATTCCAAGTGGCTGCAGAGCTATGATTGGGCA
GGTTGCCGGCGGAGGGAGGACTGAGAAGCCCCTTCTCAAAGCTGGTAATG
CATACCACAAATTCAGAGTGAAGCGAAACTGCTGGCCTAAGGTGCGTGGT
GTGGCCATGAACCCAGTGGAGCATCCTCATGGAGGAGGTAACCACCAGCA
CATTGGTCATGCTAGCACTGTTAGGCGTGATGCTCCCCCTGGCCAGAAGG
TTGGTCTTATTGCAGCCAGGAGGACTGGTCGGCTCAGAGGACAAGCTGCT
GCCACTGCAGCCAAGGCCGACAAGGCTTAAATCCTTTGTGTTACCACAAA
TCGTCTCTCTATCGCGATCTGTCATTTTACTTTTCCTGCTGCATCATTAC
CTTGGAAAAATTTGTTCAGATTTGGATCTCTGGGATGATCCTGATGTTAA
ATTATGTTGGCTTAAAGTTTAGCTTAATTTGCTCTTATCCAAAACTTTAG
TTGATTTTGATATTTTTGGATATATTAATGGATGCCTTCATCGAATTAA
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