CF832064

Overview
NameCF832064
Unique NameCF832064
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length749
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig11638 contig Csv1_Contig11638:325..1073. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF832064 vs. ExPASy Swiss-Prot
Match: RL2_METBF (50S ribosomal protein L2P OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=rpl2p PE=3 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 5.886e-37
Identity = 72/151 (47.68%), Postives = 102/151 (67.55%), Query Frame = 3
Query:    9 VYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 461
            + CG  A +  GN++P+  +PEG  +CN+E    D G   R+SG YA +++H  +++ T V +PSG  K +   CRA++G VAGGGR ++P LKAG  YHK + +   +P+V GVAMNPV+HP GGG  +H G  +TV R+APPG+KVGLI
Sbjct:   81 IECGDDADVRPGNIVPIGKVPEGFFICNIESKPNDGGRFVRSSGVYATVVTH--ESNRTAVAMPSGNIKWLNPKCRAVVGIVAGGGRVDRPWLKAGKKYHKMKTRAAKYPRVSGVAMNPVDHPFGGGAWKHPGKPTTVSRNAPPGRKVGLI 229          
BLAST of CF832064 vs. ExPASy Swiss-Prot
Match: RL2_METKA (50S ribosomal protein L2P OS=Methanopyrus kandleri GN=rpl2p PE=3 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 1.004e-36
Identity = 78/151 (51.66%), Postives = 95/151 (62.91%), Query Frame = 3
Query:    9 VYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 461
            + CG  A +  GN LP+  IPEG  + N+E   GD G  ARA G YA II+H  D   T V+LPSG  +     CRA IG ++GGG+ EKP +KAG  Y+  R K   WPKVRGVAMN V+HP GGGNHQ  G  +T+ R  PPG+KVG I
Sbjct:   84 IECGVSAEIKPGNTLPLAEIPEGVPIFNIEGQPGDGGKFARAPGCYATIIAH--DVGRTYVQLPSGKVRTFDPRCRATIGVMSGGGKREKPFVKAGKKYYHMRSKGGKWPKVRGVAMNAVDHPFGGGNHQSPGKPTTIARGDPPGRKVGHI 232          
BLAST of CF832064 vs. ExPASy Swiss-Prot
Match: RL2_CALMQ (50S ribosomal protein L2P OS=Caldivirga maquilingensis (strain DSMZ 13496 / IC-167) GN=rpl2p PE=3 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 1.713e-36
Identity = 79/146 (54.11%), Postives = 99/146 (67.81%), Query Frame = 3
Query:   18 GKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVG 455
            G  A +  GNV+P+  IPEG +VCN+E  VGD G  AR+SG Y V++ H   + TT V+LPSG    + S  RA IG VAGGGR EKP +KAGN YH+ R K   +PKVRG AM+   HPHGGG+HQ  G  + V+++APPGQKVG
Sbjct:   87 GPDAKVEPGNVMPIGKIPEGTMVCNIEKRVGDGGKYARSSGTYGVVMIHR--DSTTLVQLPSGRMIEVDSRARATIGIVAGGGRIEKPFVKAGNKYHRARTKAWKYPKVRGKAMSAYAHPHGGGSHQQGG--TPVKKNAPPGQKVG 228          
BLAST of CF832064 vs. ExPASy Swiss-Prot
Match: RL2_PYRKO (50S ribosomal protein L2P OS=Pyrococcus kodakaraensis GN=rpl2p PE=3 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 2.237e-36
Identity = 79/153 (51.63%), Postives = 97/153 (63.40%), Query Frame = 3
Query:    3 QFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 461
            Q +Y G +A + +GN LP+  IPEG  V ++E   GD G   RA G YA+++S   + D   V+LPSG  K     CRA IG VAGGGR EKP++KAG AY+  + +   WPK RGV MN V HPHGG  H HIG  STV R APPG+KVG I
Sbjct:   81 QEIYIGPEAPIAIGNTLPLAKIPEGTYVYDIEGVPGDGGKYVRAGGTYALVVSR--EKDKVIVQLPSGELKAFNPMCRATIGVVAGGGRLEKPIVKAGKAYYIAKARNRFWPKPRGVKMNAVNHPHGGKEH-HIGRPSTVSRRAPPGRKVGHI 230          
BLAST of CF832064 vs. ExPASy Swiss-Prot
Match: RL2_SULAC (50S ribosomal protein L2P OS=Sulfolobus acidocaldarius GN=rpl2p PE=3 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 2.921e-36
Identity = 80/153 (52.29%), Postives = 97/153 (63.40%), Query Frame = 3
Query:    3 QFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 461
            Q +  GK AT+  GN++ V  +PEG V+CNVE   GD G  ARA+G YAVI       +   +KL S     +    RA +G +AGGG  EKPLLKAGN Y K+RV+   WP VRGVAMN V HPHGGG HQ +   STV R+APPG+KVG I
Sbjct:   77 QEISIGKNATISNGNIVEVGQLPEGTVICNVEKLKGDGGKFARAAGSYAVI--SGKAGNKVLIKLSSEKIVEVSQNARATVGIIAGGGFVEKPLLKAGNNYWKYRVRAVKWPVVRGVAMNAVSHPHGGGLHQSVSRPSTVSRNAPPGRKVGHI 227          
BLAST of CF832064 vs. ExPASy Swiss-Prot
Match: RL2_METMA (50S ribosomal protein L2P OS=Methanosarcina mazei GN=rpl2p PE=3 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 3.815e-36
Identity = 71/151 (47.02%), Postives = 99/151 (65.56%), Query Frame = 3
Query:    9 VYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 461
            + CG  A +  GN++P+ ++PEG  +CN+E    D G   R+SG YA +++H P    T V +PSG  K +   CRA++G VAGGGR ++P LKAG  YHK + +   +P+V  VAMNP +HP GGG  +H G  +TV R+APPG+KVGLI
Sbjct:   81 IECGDDAEVKPGNIVPIGNVPEGFFICNIESKPNDGGKFVRSSGVYATVVTHEPTR--TAVSMPSGNIKWLNPKCRAVVGIVAGGGRVDRPWLKAGKKYHKMKTRAAKYPRVSAVAMNPRDHPFGGGAWKHPGKPTTVSRNAPPGRKVGLI 229          
BLAST of CF832064 vs. ExPASy Swiss-Prot
Match: RL8_ENCCU (60S ribosomal protein L8 OS=Encephalitozoon cuniculi GN=RPL8 PE=3 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 6.508e-36
Identity = 69/154 (44.81%), Postives = 105/154 (68.18%), Query Frame = 3
Query:    3 QFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTV-RRDAPPGQKVGLI 461
            Q +  G  A + +GN+  ++++PEG  V +VE   GD G  A  +G Y+++++H  + + T +K+PSG K  + S CR ++G VAGGG  +KPLLKA  A++K + + + +P+VRGVAMNPVEH HGGGNHQH+G  +TV ++D    QK+GL+
Sbjct:   72 QKILIGDDAPIDIGNITKIKNVPEGMAVNSVESVYGDGGTFAMVNGSYSLVVNHRKETNETVIKIPSGKKLTVSSECRCIVGVVAGGGIHDKPLLKASVAHYKAKARGHVFPRVRGVAMNPVEHIHGGGNHQHVGKPTTVSKKDISQEQKIGLV 225          
BLAST of CF832064 vs. ExPASy Swiss-Prot
Match: RL2_PYRFU (50S ribosomal protein L2P OS=Pyrococcus furiosus GN=rpl2p PE=3 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 8.499e-36
Identity = 79/153 (51.63%), Postives = 94/153 (61.44%), Query Frame = 3
Query:    3 QFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 461
            Q +Y G  A + VGN LP+  IPEG  V N+E   GD G   RA G YA+++S  PD     V+LPSG  K     CRA IG VAGGGR EKPL+KAG AY+K++ +   WP  RGV MN V HP GG  H H G  +T  R APPG+KVG I
Sbjct:   81 QEIYIGPDAPIAVGNTLPLAKIPEGTYVYNIEGIPGDGGKYVRAGGTYALVVSREPDK--VIVQLPSGELKAFNPMCRATIGVVAGGGRLEKPLVKAGKAYYKYKARNKFWPTPRGVKMNAVNHPFGGKEH-HPGKPTTTSRRAPPGRKVGHI 230          
BLAST of CF832064 vs. ExPASy Swiss-Prot
Match: RL2_METS5 (50S ribosomal protein L2P OS=Metallosphaera sedula (strain ATCC 51363 / DSM 5348) GN=rpl2p PE=3 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 1.110e-35
Identity = 76/153 (49.67%), Postives = 96/153 (62.75%), Query Frame = 3
Query:    3 QFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 461
            Q +  G+ +   +GN++P + +PEG  V NVE H GD G  AR +G YA+++  +      R  LPSG  K I       +G VAGGG  EKPLLKAGN Y K++VK   WP VRGVAMN V HPHGGG HQ +  +STV R+ PPG+KVG I
Sbjct:   77 QKIEVGEGSPASLGNIVPAKDLPEGVYVSNVELHRGDGGRYARTAGSYAIVVGKSEGKVILR--LPSGKIKEIDENALVTVGTVAGGGVLEKPLLKAGNNYWKYKVKATKWPDVRGVAMNVVSHPHGGGLHQSVSRSSTVARNTPPGRKVGHI 227          
BLAST of CF832064 vs. ExPASy Swiss-Prot
Match: RL2_METLZ (50S ribosomal protein L2P OS=Methanocorpusculum labreanum (strain ATCC 43576 / DSM 4855 / Z) GN=rpl2p PE=3 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 1.110e-35
Identity = 74/148 (50.00%), Postives = 93/148 (62.84%), Query Frame = 3
Query:   18 GKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 461
            G +AT++ GN LP+ +IP G  VCN+E   GD G   R+SG  AVII  +       V++PSG  K     C A +G VAGGGR +KP+LKAG  YHK +     WP+VRGVAMN ++HP GGG HQH G   TV R A PG+KVG +
Sbjct:   86 GPEATVVNGNSLPLSAIPTGVAVCNIEARPGDGGKFVRSSGVQAVIIGKSAGK--VGVRMPSGKPKWFNEACLATVGLVAGGGRIDKPILKAGKQYHKMKTSATRWPRVRGVAMNVIDHPFGGGGHQHPGKPKTVARGASPGRKVGSV 231          
The following BLAST results are available for this feature:
BLAST of CF832064 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL2_METBF5.886e-3747.6850S ribosomal protein L2P OS=Methanosarcina barker... [more]
RL2_METKA1.004e-3651.6650S ribosomal protein L2P OS=Methanopyrus kandleri... [more]
RL2_CALMQ1.713e-3654.1150S ribosomal protein L2P OS=Caldivirga maquilinge... [more]
RL2_PYRKO2.237e-3651.6350S ribosomal protein L2P OS=Pyrococcus kodakaraen... [more]
RL2_SULAC2.921e-3652.2950S ribosomal protein L2P OS=Sulfolobus acidocalda... [more]
RL2_METMA3.815e-3647.0250S ribosomal protein L2P OS=Methanosarcina mazei ... [more]
RL8_ENCCU6.508e-3644.8160S ribosomal protein L8 OS=Encephalitozoon cunicu... [more]
RL2_PYRFU8.499e-3651.6350S ribosomal protein L2P OS=Pyrococcus furiosus G... [more]
RL2_METS51.110e-3549.6750S ribosomal protein L2P OS=Metallosphaera sedula... [more]
RL2_METLZ1.110e-3550.0050S ribosomal protein L2P OS=Methanocorpusculum la... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_01E03_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01E03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832064 ID=CF832064; Name=CF832064; organism=Citrus sinensis; type=EST; length=749bp
GTCAGTTCGTGTACTGCGGCAAGAAAGCCACTCTGATGGTTGGTAATGTG
TTGCCCGTTAGATCTATCCCTGAAGGAGCTGTCGTTTGCAACGTTGAGCA
TCATGTTGGTGATCGCGGTGTTCTCGCTAGAGCTTCTGGTGATTATGCCG
TTATCATCAGTCATAACCCCGATAATGACACCACCAGGGTCAAGCTTCCA
TCTGGTGCCAAAAAGATTATTCCAAGTGGCTGCAGAGCTATGATTGGGCA
GGTTGCCGGCGGAGGGAGGACTGAGAAGCCCCTTCTCAAAGCTGGTAATG
CATACCACAAATTCAGAGTGAAGCGAAACTGCTGGCCTAAGGTGCGTGGT
GTGGCCATGAACCCAGTGGAGCATCCTCATGGAGGAGGTAACCACCAGCA
CATTGGTCATGCTAGCACTGTTAGGCGTGATGCTCCCCCTGGCCAGAAGG
TTGGTCTTATTGCAGCCAGGAGGACTGGTCGGCTCAGAGGACAAGCTGCT
GCCACTGCAGCCAAGGCCGACAAGGCTTAAATCCTTTGTGTTACCACAAA
TCGTCTCTCTATCGCGATCTGTCATTTTACTTTTCCTGCTGCATCATTAC
CTTGGAAAAATTTGTTCAGATTTGGATCTCTGGGATGATCCTGATGTTAA
ATTATGTTGGCTTAAAGTTTAGCTTAATTTGCTCTTATCCAAAACTTTAG
TTGATTTTGATATTTTTGGATATATTAATGGATGCCTTCATCGAATTAA
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