CF832065

Overview
NameCF832065
Unique NameCF832065
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length788
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig11638 contig Csv1_Contig11638:326..1113. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CF832065 vs. ExPASy Swiss-Prot
Match: RL8_XENTR (60S ribosomal protein L8 OS=Xenopus tropicalis GN=rpl8 PE=2 SV=3)

HSP 1 Score: 241.121 bits (614), Expect = 5.185e-63
Identity = 111/153 (72.55%), Postives = 129/153 (84.31%), Query Frame = -2 
Query:  329 QFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 787
            QFVYCGKKA L +GNVLPV ++PEG +VC VE   GDRG LARASG+YA +ISHNP+   TRVKLPSG+KK+I S  RA++G VAGGGR +KP+LKAG AYHK++ KRNCWP+VRGVAMNPVEHP GGGNHQHIG  ST+RRDAP G+KVGLI
Sbjct:   86 QFVYCGKKAQLNIGNVLPVGTMPEGTIVCCVEEKPGDRGKLARASGNYATVISHNPETKKTRVKLPSGSKKVISSANRAIVGVVAGGGRIDKPILKAGRAYHKYKAKRNCWPRVRGVAMNPVEHPFGGGNHQHIGKPSTIRRDAPAGRKVGLI 238
[Close]
BLAST of CF832065 vs. ExPASy Swiss-Prot
Match: RL8_XENLA (60S ribosomal protein L8 OS=Xenopus laevis GN=rpl8 PE=2 SV=3)

HSP 1 Score: 241.121 bits (614), Expect = 5.185e-63
Identity = 111/153 (72.55%), Postives = 129/153 (84.31%), Query Frame = -2 
Query:  329 QFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 787
            QFVYCGKKA L +GNVLPV ++PEG +VC VE   GDRG LARASG+YA +ISHNP+   TRVKLPSG+KK+I S  RA++G VAGGGR +KP+LKAG AYHK++ KRNCWP+VRGVAMNPVEHP GGGNHQHIG  ST+RRDAP G+KVGLI
Sbjct:   86 QFVYCGKKAQLNIGNVLPVGTMPEGTIVCCVEEKPGDRGKLARASGNYATVISHNPETKKTRVKLPSGSKKVISSANRAIVGVVAGGGRIDKPILKAGRAYHKYKAKRNCWPRVRGVAMNPVEHPFGGGNHQHIGKPSTIRRDAPAGRKVGLI 238
[Close]
BLAST of CF832065 vs. ExPASy Swiss-Prot
Match: RL8_DROME (60S ribosomal protein L8 OS=Drosophila melanogaster GN=RpL8 PE=2 SV=1)

HSP 1 Score: 240.35 bits (612), Expect = 8.844e-63
Identity = 108/153 (70.59%), Postives = 128/153 (83.66%), Query Frame = -2 
Query:  329 QFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 787
            QFVYCG+KATL +GNV+P+  +PEG ++CN+E   GDRG LAR SG+YA +I+HN D   TRVKLPSGAKK++PS  RAM+G VAGGGR +KP+LKAG AYHK++VKRN WPKVRGVAMNPVEHPHGGGNHQHIG ASTV+R    G+KVGLI
Sbjct:   86 QFVYCGRKATLQIGNVMPLSQMPEGTIICNLEEKTGDRGRLARTSGNYATVIAHNQDTKKTRVKLPSGAKKVVPSANRAMVGIVAGGGRIDKPILKAGRAYHKYKVKRNSWPKVRGVAMNPVEHPHGGGNHQHIGKASTVKRGTSAGRKVGLI 238
[Close]
BLAST of CF832065 vs. ExPASy Swiss-Prot
Match: RL8_RAT (60S ribosomal protein L8 OS=Rattus norvegicus GN=Rpl8 PE=2 SV=2)

HSP 1 Score: 239.965 bits (611), Expect = 1.155e-62
Identity = 110/153 (71.90%), Postives = 129/153 (84.31%), Query Frame = -2 
Query:  329 QFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 787
            QFVYCGKKA L +GNVLPV ++PEG +VC +E   GDRG LARASG+YA +ISHNP+   TRVKLPSG+KK+I S  RA++G VAGGGR +KP+LKAG AYHK++ KRNCWP+VRGVAMNPVEHP GGGNHQHIG  ST+RRDAP G+KVGLI
Sbjct:   86 QFVYCGKKAQLNIGNVLPVGTMPEGTIVCCLEEKPGDRGKLARASGNYATVISHNPETKKTRVKLPSGSKKVISSANRAVVGVVAGGGRIDKPILKAGRAYHKYKAKRNCWPRVRGVAMNPVEHPFGGGNHQHIGKPSTIRRDAPAGRKVGLI 238
[Close]
BLAST of CF832065 vs. ExPASy Swiss-Prot
Match: RL8_PONAB (60S ribosomal protein L8 OS=Pongo abelii GN=RPL8 PE=2 SV=3)

HSP 1 Score: 239.965 bits (611), Expect = 1.155e-62
Identity = 110/153 (71.90%), Postives = 129/153 (84.31%), Query Frame = -2 
Query:  329 QFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 787
            QFVYCGKKA L +GNVLPV ++PEG +VC +E   GDRG LARASG+YA +ISHNP+   TRVKLPSG+KK+I S  RA++G VAGGGR +KP+LKAG AYHK++ KRNCWP+VRGVAMNPVEHP GGGNHQHIG  ST+RRDAP G+KVGLI
Sbjct:   86 QFVYCGKKAQLNIGNVLPVGTMPEGTIVCCLEEKPGDRGKLARASGNYATVISHNPETKKTRVKLPSGSKKVISSANRAVVGVVAGGGRIDKPILKAGRAYHKYKAKRNCWPRVRGVAMNPVEHPFGGGNHQHIGKPSTIRRDAPAGRKVGLI 238
[Close]
BLAST of CF832065 vs. ExPASy Swiss-Prot
Match: RL8_MOUSE (60S ribosomal protein L8 OS=Mus musculus GN=Rpl8 PE=2 SV=2)

HSP 1 Score: 239.965 bits (611), Expect = 1.155e-62
Identity = 110/153 (71.90%), Postives = 129/153 (84.31%), Query Frame = -2 
Query:  329 QFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 787
            QFVYCGKKA L +GNVLPV ++PEG +VC +E   GDRG LARASG+YA +ISHNP+   TRVKLPSG+KK+I S  RA++G VAGGGR +KP+LKAG AYHK++ KRNCWP+VRGVAMNPVEHP GGGNHQHIG  ST+RRDAP G+KVGLI
Sbjct:   86 QFVYCGKKAQLNIGNVLPVGTMPEGTIVCCLEEKPGDRGKLARASGNYATVISHNPETKKTRVKLPSGSKKVISSANRAVVGVVAGGGRIDKPILKAGRAYHKYKAKRNCWPRVRGVAMNPVEHPFGGGNHQHIGKPSTIRRDAPAGRKVGLI 238
[Close]
BLAST of CF832065 vs. ExPASy Swiss-Prot
Match: RL8_HUMAN (60S ribosomal protein L8 OS=Homo sapiens GN=RPL8 PE=1 SV=2)

HSP 1 Score: 239.965 bits (611), Expect = 1.155e-62
Identity = 110/153 (71.90%), Postives = 129/153 (84.31%), Query Frame = -2 
Query:  329 QFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 787
            QFVYCGKKA L +GNVLPV ++PEG +VC +E   GDRG LARASG+YA +ISHNP+   TRVKLPSG+KK+I S  RA++G VAGGGR +KP+LKAG AYHK++ KRNCWP+VRGVAMNPVEHP GGGNHQHIG  ST+RRDAP G+KVGLI
Sbjct:   86 QFVYCGKKAQLNIGNVLPVGTMPEGTIVCCLEEKPGDRGKLARASGNYATVISHNPETKKTRVKLPSGSKKVISSANRAVVGVVAGGGRIDKPILKAGRAYHKYKAKRNCWPRVRGVAMNPVEHPFGGGNHQHIGKPSTIRRDAPAGRKVGLI 238
[Close]
BLAST of CF832065 vs. ExPASy Swiss-Prot
Match: RL8_BOVIN (60S ribosomal protein L8 OS=Bos taurus GN=RPL8 PE=2 SV=3)

HSP 1 Score: 239.965 bits (611), Expect = 1.155e-62
Identity = 110/153 (71.90%), Postives = 129/153 (84.31%), Query Frame = -2 
Query:  329 QFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 787
            QFVYCGKKA L +GNVLPV ++PEG +VC +E   GDRG LARASG+YA +ISHNP+   TRVKLPSG+KK+I S  RA++G VAGGGR +KP+LKAG AYHK++ KRNCWP+VRGVAMNPVEHP GGGNHQHIG  ST+RRDAP G+KVGLI
Sbjct:   86 QFVYCGKKAQLNIGNVLPVGTMPEGTIVCCLEEKPGDRGKLARASGNYATVISHNPETKKTRVKLPSGSKKVISSANRAVVGVVAGGGRIDKPILKAGRAYHKYKAKRNCWPRVRGVAMNPVEHPFGGGNHQHIGKPSTIRRDAPAGRKVGLI 238
[Close]
BLAST of CF832065 vs. ExPASy Swiss-Prot
Match: RL8_DANRE (60S ribosomal protein L8 OS=Danio rerio GN=rpl8 PE=2 SV=3)

HSP 1 Score: 238.039 bits (606), Expect = 4.389e-62
Identity = 108/153 (70.59%), Postives = 129/153 (84.31%), Query Frame = -2 
Query:  329 QFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 787
            QF+YCGKKA L +GNVLPV ++PEG +VC +E   GDRG LARASG+YA +ISHNP+   +RVKLPSG+KK+I S  RA++G VAGGGR +KP+LKAG AYHK++ KRNCWP+VRGVAMNPVEHP GGGNHQHIG  ST+RRDAP G+KVGLI
Sbjct:   86 QFIYCGKKAQLNIGNVLPVGTMPEGTIVCCLEEKPGDRGKLARASGNYATVISHNPETKKSRVKLPSGSKKVISSANRAVVGVVAGGGRIDKPILKAGRAYHKYKAKRNCWPRVRGVAMNPVEHPFGGGNHQHIGKPSTIRRDAPAGRKVGLI 238
[Close]
BLAST of CF832065 vs. ExPASy Swiss-Prot
Match: RL8_DICDI (60S ribosomal protein L8 OS=Dictyostelium discoideum GN=rpl8 PE=1 SV=2)

HSP 1 Score: 236.498 bits (602), Expect = 1.277e-61
Identity = 105/153 (68.63%), Postives = 128/153 (83.66%), Query Frame = -2 
Query:  329 QFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 787
            QFV+ GKKATL +GN+LP+  +PEG ++CNVE  +GD G +AR SG+YA I+SHNPD   TR+KLPSG+KK + S  RAMIG VAGGGR +KP+LKAG A+HK+RVK+N WPKVRGVAMNPVEHPHGGGNHQH+GHA+T +RD P G+KVGLI
Sbjct:   87 QFVFAGKKATLTIGNILPIGKLPEGTIICNVEEKLGDCGAVARCSGNYATIVSHNPDEGVTRIKLPSGSKKNVSSLARAMIGIVAGGGRIDKPMLKAGRAFHKYRVKKNNWPKVRGVAMNPVEHPHGGGNHQHVGHATTTKRDDPAGKKVGLI 239
The following BLAST results are available for this feature:
BLAST of CF832065 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL8_XENTR5.185e-6372.5560S ribosomal protein L8 OS=Xenopus tropicalis GN=... [more]
RL8_XENLA5.185e-6372.5560S ribosomal protein L8 OS=Xenopus laevis GN=rpl8... [more]
RL8_DROME8.844e-6370.5960S ribosomal protein L8 OS=Drosophila melanogaste... [more]
RL8_RAT1.155e-6271.9060S ribosomal protein L8 OS=Rattus norvegicus GN=R... [more]
RL8_PONAB1.155e-6271.9060S ribosomal protein L8 OS=Pongo abelii GN=RPL8 P... [more]
RL8_MOUSE1.155e-6271.9060S ribosomal protein L8 OS=Mus musculus GN=Rpl8 P... [more]
RL8_HUMAN1.155e-6271.9060S ribosomal protein L8 OS=Homo sapiens GN=RPL8 P... [more]
RL8_BOVIN1.155e-6271.9060S ribosomal protein L8 OS=Bos taurus GN=RPL8 PE=... [more]
RL8_DANRE4.389e-6270.5960S ribosomal protein L8 OS=Danio rerio GN=rpl8 PE... [more]
RL8_DICDI1.277e-6168.6360S ribosomal protein L8 OS=Dictyostelium discoide... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_01E04_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01E04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832065 ID=CF832065; Name=CF832065; organism=Citrus sinensis; type=EST; length=788bp
TTTTTTTTTTTTTTTTTCGATAAAAAACATTTCCATTTACTCATTTCAAT
GAAGGCATCCATTAATATATCCAAAAATATCACCCTCAACTAAAGTTTTG
GATAAGAGCAAATTAAGCTAAACTTTAAGCCAACATAATTTAACATCAGG
ATCATCCCAGAGATCCAAATCTGAACAAATTTTTCCAAGGTAATGATGCA
GCAGGAAAAGTAAAATGACAGATCGCGATAGAGAGACGATTTGTGGTAAC
ACAAAGGATTTAAGCCTTGTCGGCCTTGGCTGCAGTGGCAGCAGCTTGTC
CTCTGAGCCGACCAGTCCTCCTGGCTGCAATAAGACCAACCTTCTGGCCA
GGGGGAGCATCACGCCTAACAGTGCTAGCATGACCAATGTGCTGGTGGTT
ACCTCCTCCATGAGGATGCTCCACTGGGTTCATGGCCACACCACGCACCT
TAGGCCAGCAGTTTCGCTTCACTCTGAATTTGTGGTATGCATTACCAGCT
TTGAGAAGGGGCTTCTCAGTCCTCCCTCCGCCGGCAACCTGCCCAATCAT
AGCTCTGCAGCCACTTGGAATAATCTTTTTGGCACCAGATGGAAGCTTGA
CCCTGGTGGTGTCATTATCGGGGTTATGACTGATGATAACGGCATAATCA
CCAGAAGCTCTAGCGAGAACACCGCGATCACCAACATGATGCTCAACGTT
GCAAACGACAGCTCCTTCAGGGATAGATCTAACGGGCAACACATTACCAA
CCATCAGAGTGGCTTTCTTGCCGCAGTACACGAACTGA
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