CF832066

Overview
NameCF832066
Unique NameCF832066
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length781
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF832066 vs. ExPASy Swiss-Prot
Match: RL2_PELPD (50S ribosomal protein L2 OS=Pelobacter propionicus (strain DSM 2379) GN=rplB PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 1.010e-18
Identity = 55/130 (42.31%), Postives = 80/130 (61.54%), Query Frame = 1
Query:   19 GKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIG 408
            G +A +  GN LP+++IP G ++ NVE  +G    LAR++G +A +++   +   ++VKLPSG  +++   C A IGQV      +  L KAG A  ++  KR   PKVRGVAMNPV+HPHGGG  +  G
Sbjct:  119 GPEADIKPGNALPLKAIPLGTIIHNVELKLGKGAQLARSAGTFAQLMAK--EGRYSQVKLPSGEVRMVLQDCYATIGQVGNVDHEKVSLGKAGRA--RWLGKR---PKVRGVAMNPVDHPHGGGEGRTSG 241          
BLAST of CF832066 vs. ExPASy Swiss-Prot
Match: RL2_PECCP (50S ribosomal protein L2 OS=Pectobacterium carotovorum subsp. carotovorum (strain PC1) GN=rplB PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.319e-18
Identity = 54/130 (41.54%), Postives = 72/130 (55.38%), Query Frame = 1
Query:   19 GKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIG 408
            G  A +  GN LP+R+IP G+ V NVE   G  G LAR++G Y  I++   D     ++L SG  + + S CRA +G+V       + L KAG A       R   P VRG AMNPV+HPHGGG  ++ G
Sbjct:  119 GVDAAIKAGNTLPMRNIPVGSTVHNVEMKPGKGGQLARSAGTYVQIVAR--DGSYVTLRLRSGEMRKVESDCRATLGEVGNAEHMLRVLGKAGAARW-----RGVRPTVRGTAMNPVDHPHGGGEGRNFG 241          
BLAST of CF832066 vs. ExPASy Swiss-Prot
Match: RL2_ERWCT (50S ribosomal protein L2 OS=Erwinia carotovora subsp. atroseptica GN=rplB PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.319e-18
Identity = 54/130 (41.54%), Postives = 72/130 (55.38%), Query Frame = 1
Query:   19 GKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIG 408
            G  A +  GN LP+R+IP G+ V NVE   G  G LAR++G Y  I++   D     ++L SG  + + S CRA +G+V       + L KAG A       R   P VRG AMNPV+HPHGGG  ++ G
Sbjct:  119 GVDAAIKAGNTLPMRNIPVGSTVHNVEMKPGKGGQLARSAGTYVQIVAR--DGSYVTLRLRSGEMRKVESDCRATLGEVGNAEHMLRVLGKAGAARW-----RGIRPTVRGTAMNPVDHPHGGGEGRNFG 241          
BLAST of CF832066 vs. ExPASy Swiss-Prot
Match: RL2_BUCBP (50S ribosomal protein L2 OS=Buchnera aphidicola subsp. Baizongia pistaciae GN=rplB PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.319e-18
Identity = 54/135 (40.00%), Postives = 75/135 (55.56%), Query Frame = 1
Query:    4 SSCTVGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIG 408
            S    G  A + +GN LP+++IP G V+ NVE   G  G +AR++G Y  +IS   +N    ++L SG  + + S CRA IG+V       + L KAG +       R   P VRG AMNPV+HPHGGG  ++ G
Sbjct:  114 SKIVSGFNAEIKIGNALPMKNIPIGTVIHNVEIKPGKGGQIARSAGTYVQLISR--ENSYVTIRLRSGETRKLESKCRATIGEVGNSESMLRVLGKAGASRW-----RGIRPTVRGTAMNPVDHPHGGGEGRNFG 241          
BLAST of CF832066 vs. ExPASy Swiss-Prot
Match: RK2_CUCSA (50S ribosomal protein L2, chloroplastic OS=Cucumis sativus GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.319e-18
Identity = 51/128 (39.84%), Postives = 72/128 (56.25%), Query Frame = 1
Query:   19 GKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCW----PKVRGVAMNPVEHPHGGG 390
            G +  + +GN LP+  +P G  + N+E  +G  G LARA+G  A +I+   +  +  +KLPSG  ++I   C A +GQV   G  +K L +AG+          CW    P VRGV MNPV+HPHGGG
Sbjct:  117 GTEVPIKMGNALPLTDMPLGTAIHNIEITLGKGGQLARAAGAVAKLIA--KEGKSATLKLPSGEVRLISKNCSATVGQVGNAGVNQKSLGRAGS---------KCWLGKRPVVRGVVMNPVDHPHGGG 233          
BLAST of CF832066 vs. ExPASy Swiss-Prot
Match: RL2_GEOUR (50S ribosomal protein L2 OS=Geobacter uraniireducens (strain Rf4) GN=rplB PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.722e-18
Identity = 53/130 (40.77%), Postives = 78/130 (60.00%), Query Frame = 1
Query:   19 GKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIG 408
            G  A +  GN LP+RSIP G ++ N+E  +G    LAR++G +A +++   ++   +VKLPSG  +++   C A +GQV         + KAG +  ++  KR   PKVRGVAMNPV+HPHGGG  +  G
Sbjct:  119 GPSADIKPGNALPIRSIPLGTIIHNIELKIGKGAQLARSAGTFAQLMA--KEDKYAQVKLPSGEVRMVLLDCIATVGQVGNIDHENVSIGKAGRS--RWLGKR---PKVRGVAMNPVDHPHGGGEGRTSG 241          
BLAST of CF832066 vs. ExPASy Swiss-Prot
Match: RK2_POPTR (50S ribosomal protein L2, chloroplastic OS=Populus trichocarpa GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.722e-18
Identity = 51/128 (39.84%), Postives = 72/128 (56.25%), Query Frame = 1
Query:   19 GKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCW----PKVRGVAMNPVEHPHGGG 390
            G +  + +GN LP+  +P G  + N+E  +G  G LARA+G  A +I+   +  +  +KLPSG  ++I   C A +GQV   G  +K L +AG+          CW    P VRGV MNPV+HPHGGG
Sbjct:  117 GTEVPIKMGNALPLTDMPLGTAIHNIEITLGRGGQLARAAGAVAKLIA--KEGKSATLKLPSGEVRLISKNCSATVGQVGNAGVNQKSLGRAGS---------KCWLGKRPVVRGVVMNPVDHPHGGG 233          
BLAST of CF832066 vs. ExPASy Swiss-Prot
Match: RK2_CITSI (50S ribosomal protein L2, chloroplastic OS=Citrus sinensis GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.722e-18
Identity = 51/128 (39.84%), Postives = 72/128 (56.25%), Query Frame = 1
Query:   19 GKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCW----PKVRGVAMNPVEHPHGGG 390
            G +  + +GN LP+  +P G  + N+E  +G  G LARA+G  A +I+   +  +  +KLPSG  ++I   C A +GQV   G  +K L +AG+          CW    P VRGV MNPV+HPHGGG
Sbjct:  117 GTEVPIKMGNALPLTDMPLGTAIHNIEITLGKGGQLARAAGAVAKLIA--KEGKSATLKLPSGEVRLISKNCSATVGQVGNVGANQKSLGRAGS---------KCWLGKRPVVRGVVMNPVDHPHGGG 233          
BLAST of CF832066 vs. ExPASy Swiss-Prot
Match: RK2_BUXMI (50S ribosomal protein L2, chloroplastic OS=Buxus microphylla GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.722e-18
Identity = 51/128 (39.84%), Postives = 72/128 (56.25%), Query Frame = 1
Query:   19 GKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCW----PKVRGVAMNPVEHPHGGG 390
            G +  + +GN LP+  +P G  + N+E  +G  G LARA+G  A +I+   +  +  +KLPSG  ++I   C A +GQV   G  +K L +AG+          CW    P VRGV MNPV+HPHGGG
Sbjct:  115 GTEVPIKMGNALPLTDMPLGTAIHNIEITLGKGGQLARAAGAVAKLIA--KEGKSATLKLPSGEVRLISKNCSATVGQVGNVGANQKSLGRAGS---------KCWLGKRPVVRGVVMNPVDHPHGGG 231          
BLAST of CF832066 vs. ExPASy Swiss-Prot
Match: RK2_AETGR (50S ribosomal protein L2, chloroplastic OS=Aethionema grandiflora GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.722e-18
Identity = 51/128 (39.84%), Postives = 72/128 (56.25%), Query Frame = 1
Query:   19 GKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCW----PKVRGVAMNPVEHPHGGG 390
            G +  + +GN LP+  +P G  + N+E  +G  G LARA+G  A +I+   +  +  +KLPSG  ++I   C A +GQV   G  +K L +AG+          CW    P VRGV MNPV+HPHGGG
Sbjct:  117 GTEVPIKMGNALPLTDMPLGTAIHNIEITLGKGGQLARAAGAVAKLIA--KEGKSATIKLPSGEVRLISKNCSATVGQVGNVGVNQKSLGRAGS---------KCWLGKRPVVRGVVMNPVDHPHGGG 233          
The following BLAST results are available for this feature:
BLAST of CF832066 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL2_PELPD1.010e-1842.3150S ribosomal protein L2 OS=Pelobacter propionicus... [more]
RL2_PECCP1.319e-1841.5450S ribosomal protein L2 OS=Pectobacterium carotov... [more]
RL2_ERWCT1.319e-1841.5450S ribosomal protein L2 OS=Erwinia carotovora sub... [more]
RL2_BUCBP1.319e-1840.0050S ribosomal protein L2 OS=Buchnera aphidicola su... [more]
RK2_CUCSA1.319e-1839.8450S ribosomal protein L2, chloroplastic OS=Cucumis... [more]
RL2_GEOUR1.722e-1840.7750S ribosomal protein L2 OS=Geobacter uraniireduce... [more]
RK2_POPTR1.722e-1839.8450S ribosomal protein L2, chloroplastic OS=Populus... [more]
RK2_CITSI1.722e-1839.8450S ribosomal protein L2, chloroplastic OS=Citrus ... [more]
RK2_BUXMI1.722e-1839.8450S ribosomal protein L2, chloroplastic OS=Buxus m... [more]
RK2_AETGR1.722e-1839.8450S ribosomal protein L2, chloroplastic OS=Aethion... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_01E04_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01E04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832066 ID=CF832066; Name=CF832066; organism=Citrus sinensis; type=EST; length=781bp
GTCAGTTCGTGCACTGTCGGCAAGAAAGCCACTCTGATGGTTGGTAATGT
GTTGCCCGTTAGATCTATCCCTGAAGGAGCTGTCGTTTGCAACGTTGAGC
ATCATGTTGGTGATCGCGGTGTTCTCGCTAGAGCTTCTGGTGATTATGCC
GTTATCATCAGTCATAACCCCGATAATGACACCACCAGGGTCAAGCTTCC
ATCTGGTGCCAAAAAGATTATTCCAAGTGGCTGCAGAGCTATGATTGGGC
AGGTTGCCGGCGGAGGGAGGACTGAGAAGCCCCTTCTCAAAGCTGGTAAT
GCATACCACAAATTCAGAGTGAAGCGAAACTGCTGGCCTAAGGTGCGTGG
TGTGGCCATGAACCCAGTGGAGCATCCTCATGGAGGAGGTAACCACCAGC
ACATTGGTCATGCTAGCACTGTTAGGCGTGATGCTCCCCCTGGCCAGAAG
GTTGGTCTTATTGCAGCCAGGAGGACTGGTCGGCTCAGAGGACAAGCTGC
TGCCACTGCAGCCAAGGCCGACAAGGCTTAAATCCTTTGTGTTACCACAA
ATCGTCTCTCTATCGCGATCTGTCATTTTACTTTTCCTGCTGCATCATTA
CCTTGGAAAAATTTGTTCAGATTTGGATCTCTGGGATGATCCTGATGTTA
AATTATGTTGGCTTAAAGTTTAGCTTAATTTGCTCTTATCCAAAACTTTA
GTTGATTTTGATATTTTTGGATATATTAATGGATGCCTTCATCAAATTAA
GTAAATGGAAATGTTGTTTTTATCTGAAAAA
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