CF832066

Overview
NameCF832066
Unique NameCF832066
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length781
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF832066 vs. ExPASy Swiss-Prot
Match: RK2_AETCO (50S ribosomal protein L2, chloroplastic OS=Aethionema cordifolium GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.722e-18
Identity = 51/128 (39.84%), Postives = 72/128 (56.25%), Query Frame = 1
Query:   19 GKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCW----PKVRGVAMNPVEHPHGGG 390
            G +  + +GN LP+  +P G  + N+E  +G  G LARA+G  A +I+   +  +  +KLPSG  ++I   C A +GQV   G  +K L +AG+          CW    P VRGV MNPV+HPHGGG
Sbjct:  117 GTEVPIKMGNALPLTDMPLGTAIHNIEITLGKGGQLARAAGAVAKLIA--KEGKSATIKLPSGEVRLISKNCSATVGQVGNVGVNQKSLGRAGS---------KCWLGKRPVVRGVVMNPVDHPHGGG 233          
BLAST of CF832066 vs. ExPASy Swiss-Prot
Match: RK2B_POPAL (50S ribosomal protein L2-B, chloroplastic OS=Populus alba GN=rpl2-B PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.722e-18
Identity = 51/128 (39.84%), Postives = 72/128 (56.25%), Query Frame = 1
Query:   19 GKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCW----PKVRGVAMNPVEHPHGGG 390
            G +  + +GN LP+  +P G  + N+E  +G  G LARA+G  A +I+   +  +  +KLPSG  ++I   C A +GQV   G  +K L +AG+          CW    P VRGV MNPV+HPHGGG
Sbjct:  117 GTEVPIKMGNALPLTDMPLGTAIHNIEITLGRGGQLARAAGAVAKLIA--KEGKSATLKLPSGEVRLISKNCSATVGQVGNAGVNQKSLGRAGS---------KCWLGKRPVVRGVVMNPVDHPHGGG 233          
BLAST of CF832066 vs. ExPASy Swiss-Prot
Match: RL2_BORGA (50S ribosomal protein L2 OS=Borrelia garinii GN=rplB PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 2.249e-18
Identity = 53/130 (40.77%), Postives = 77/130 (59.23%), Query Frame = 1
Query:   19 GKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIG 408
            G  A + +GN LP+ +IP G  + N+E +VG  G L R++G YA+I++   D +   VKL SG  ++I   C A IG++         + KAG +  ++  +R   PKVRGVAMNPV+HPHGGG  +  G
Sbjct:  121 GPNAPIKIGNALPLENIPIGRTIHNIELNVGKGGQLVRSAGGYAMILA--SDGNYVTVKLSSGEMRLIFKKCIATIGEIGNEDYANVSIGKAGKS--RWLGRR---PKVRGVAMNPVDHPHGGGEGKTSG 243          
BLAST of CF832066 vs. ExPASy Swiss-Prot
Match: RL2_BORAP (50S ribosomal protein L2 OS=Borrelia afzelii (strain PKo) GN=rplB PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 2.249e-18
Identity = 54/130 (41.54%), Postives = 77/130 (59.23%), Query Frame = 1
Query:   19 GKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIG 408
            G  A + +GN LP+ +IP G  V N+E +VG  G L R++G YA+I++   D +   VKL SG  ++I   C A IG++         + KAG +  ++  +R   PKVRGVAMNPV+HPHGGG  +  G
Sbjct:  121 GPNAPIKIGNALPLENIPIGRTVHNIELNVGKGGQLVRSAGGYAMILA--SDGNYVTVKLSSGEVRLIFKKCIATIGEIGNEDYVNVSIGKAGKS--RWLGRR---PKVRGVAMNPVDHPHGGGEGKTSG 243          
BLAST of CF832066 vs. ExPASy Swiss-Prot
Match: RK2_MANES (50S ribosomal protein L2, chloroplastic OS=Manihot esculenta GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 2.249e-18
Identity = 51/128 (39.84%), Postives = 72/128 (56.25%), Query Frame = 1
Query:   19 GKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCW----PKVRGVAMNPVEHPHGGG 390
            G +  + +GN LP+  +P G  + N+E  +G  G LARA+G  A +I+   +  +  +KLPSG  ++I   C A +GQV   G  +K L +AG+          CW    P VRGV MNPV+HPHGGG
Sbjct:  120 GTEVPIKMGNALPLTDMPLGTAIHNIEITLGKGGQLARAAGAVAKLIA--KEGKSATLKLPSGEVRLISKNCSATVGQVGNTGVNQKSLGRAGS---------KCWLGKRPVVRGVVMNPVDHPHGGG 236          
BLAST of CF832066 vs. ExPASy Swiss-Prot
Match: RL2_RHOCS (50S ribosomal protein L2 OS=Rhodospirillum centenum (strain ATCC 51521 / SW) GN=rplB PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.938e-18
Identity = 53/134 (39.55%), Postives = 73/134 (54.48%), Query Frame = 1
Query:   19 GKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCW----PKVRGVAMNPVEHPHGGGNHQHIG 408
            G+K  +  GN +P+R+IP G +V NVE   G  G LARA+G Y  ++    D    ++KLPSG  +++   C A IG V+   +    + KAG         RN W    P VRGV MNP++HPHGGG  +  G
Sbjct:  120 GEKVDVKPGNAMPLRNIPVGTIVHNVELKPGKGGQLARAAGTYLQLVGR--DQGYAQLKLPSGELRVVRGECFATIGAVSNPDQANVVIGKAG---------RNRWLGRRPSVRGVVMNPIDHPHGGGEGRTSG 242          
BLAST of CF832066 vs. ExPASy Swiss-Prot
Match: RL2_MYCAP (50S ribosomal protein L2 OS=Mycoplasma agalactiae (strain PG2) GN=rplB PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.938e-18
Identity = 57/145 (39.31%), Postives = 79/145 (54.48%), Query Frame = 1
Query:   19 GKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGG-NHQHIGHASTVRRDAPPGQK 450
            G    ++VGN LP+ +IPEG  V NVE   G  G++AR++G  A I+  + D     ++L SG  + I + CRA IG V  G  +   L KAG + H         P VRG  MNP++HPHGGG + Q IG  + +    P G+K
Sbjct:  120 GNNVDILVGNSLPLSNIPEGTFVHNVEMQPGGGGIIARSAGTSAQILGKDDDGKYVVLRLKSGEMRRILARCRATIGTVGNGEHSLVLLGKAGRSRH-----LGVRPTVRGSVMNPIDHPHGGGVSKQPIGRKAPL---TPWGKK 256          
BLAST of CF832066 vs. ExPASy Swiss-Prot
Match: RL2_GEOSL (50S ribosomal protein L2 OS=Geobacter sulfurreducens GN=rplB PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.938e-18
Identity = 53/134 (39.55%), Postives = 78/134 (58.21%), Query Frame = 1
Query:    7 SCTVGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIG 408
            S      A +  GN LP+R+IP G ++ N+E  +G  G LAR++G +A +++   +    +VKLPSG  +++   C A IGQV         + KAG +  ++  +R   PKVRGVAMNPV+HPHGGG  +  G
Sbjct:  115 SIVASSNADIKPGNALPLRAIPLGTIIHNIELKIGKGGQLARSAGTFAQLMA--KEGKYAQVKLPSGEVRMVLLDCMATIGQVGNIDHENVSIGKAGRS--RWLGRR---PKVRGVAMNPVDHPHGGGEGRTSG 241          
BLAST of CF832066 vs. ExPASy Swiss-Prot
Match: RL2_GEOSF (50S ribosomal protein L2 OS=Geobacter sp. (strain FRC-32) GN=rplB PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.938e-18
Identity = 53/127 (41.73%), Postives = 76/127 (59.84%), Query Frame = 1
Query:   28 ATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIG 408
            A +  GN LP+RSIP G ++ N+E  +G    LAR++G +A +++   +    +VKLPSG  +++   C A IGQV         + KAG +  ++  KR   PKVRGVAMNPV+HPHGGG  +  G
Sbjct:  122 ADIKPGNALPIRSIPLGTIIHNIELKIGKGAQLARSAGTFAQLMAK--EEKYAQVKLPSGEVRMVLMDCMATIGQVGNLDHENVSIGKAGRS--RWLGKR---PKVRGVAMNPVDHPHGGGEGRTSG 241          
BLAST of CF832066 vs. ExPASy Swiss-Prot
Match: RL2_BORBZ (50S ribosomal protein L2 OS=Borrelia burgdorferi (strain ZS7) GN=rplB PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.938e-18
Identity = 54/130 (41.54%), Postives = 77/130 (59.23%), Query Frame = 1
Query:   19 GKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIG 408
            G  A + +GN LP+ +IP G  V N+E +VG  G L R++G YA+I++   D +   VKL SG  ++I   C A IG++         + KAG +  ++  +R   PKVRGVAMNPV+HPHGGG  +  G
Sbjct:  121 GPNAPIKIGNALPLENIPIGRTVHNIELNVGKGGQLIRSAGGYAMILA--SDGNYVTVKLSSGEMRLIFKKCIATIGEIGNEDYANISIGKAGKS--RWLGRR---PKVRGVAMNPVDHPHGGGEGKTSG 243          
The following BLAST results are available for this feature:
BLAST of CF832066 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RK2_AETCO1.722e-1839.8450S ribosomal protein L2, chloroplastic OS=Aethion... [more]
RK2B_POPAL1.722e-1839.8450S ribosomal protein L2-B, chloroplastic OS=Popul... [more]
RL2_BORGA2.249e-1840.7750S ribosomal protein L2 OS=Borrelia garinii GN=rp... [more]
RL2_BORAP2.249e-1841.5450S ribosomal protein L2 OS=Borrelia afzelii (stra... [more]
RK2_MANES2.249e-1839.8450S ribosomal protein L2, chloroplastic OS=Manihot... [more]
RL2_RHOCS2.938e-1839.5550S ribosomal protein L2 OS=Rhodospirillum centenu... [more]
RL2_MYCAP2.938e-1839.3150S ribosomal protein L2 OS=Mycoplasma agalactiae ... [more]
RL2_GEOSL2.938e-1839.5550S ribosomal protein L2 OS=Geobacter sulfurreduce... [more]
RL2_GEOSF2.938e-1841.7350S ribosomal protein L2 OS=Geobacter sp. (strain ... [more]
RL2_BORBZ2.938e-1841.5450S ribosomal protein L2 OS=Borrelia burgdorferi (... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_01E04_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01E04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832066 ID=CF832066; Name=CF832066; organism=Citrus sinensis; type=EST; length=781bp
GTCAGTTCGTGCACTGTCGGCAAGAAAGCCACTCTGATGGTTGGTAATGT
GTTGCCCGTTAGATCTATCCCTGAAGGAGCTGTCGTTTGCAACGTTGAGC
ATCATGTTGGTGATCGCGGTGTTCTCGCTAGAGCTTCTGGTGATTATGCC
GTTATCATCAGTCATAACCCCGATAATGACACCACCAGGGTCAAGCTTCC
ATCTGGTGCCAAAAAGATTATTCCAAGTGGCTGCAGAGCTATGATTGGGC
AGGTTGCCGGCGGAGGGAGGACTGAGAAGCCCCTTCTCAAAGCTGGTAAT
GCATACCACAAATTCAGAGTGAAGCGAAACTGCTGGCCTAAGGTGCGTGG
TGTGGCCATGAACCCAGTGGAGCATCCTCATGGAGGAGGTAACCACCAGC
ACATTGGTCATGCTAGCACTGTTAGGCGTGATGCTCCCCCTGGCCAGAAG
GTTGGTCTTATTGCAGCCAGGAGGACTGGTCGGCTCAGAGGACAAGCTGC
TGCCACTGCAGCCAAGGCCGACAAGGCTTAAATCCTTTGTGTTACCACAA
ATCGTCTCTCTATCGCGATCTGTCATTTTACTTTTCCTGCTGCATCATTA
CCTTGGAAAAATTTGTTCAGATTTGGATCTCTGGGATGATCCTGATGTTA
AATTATGTTGGCTTAAAGTTTAGCTTAATTTGCTCTTATCCAAAACTTTA
GTTGATTTTGATATTTTTGGATATATTAATGGATGCCTTCATCAAATTAA
GTAAATGGAAATGTTGTTTTTATCTGAAAAA
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