CF832066
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF832066 vs. ExPASy Swiss-Prot
Match: RK2_AETCO (50S ribosomal protein L2, chloroplastic OS=Aethionema cordifolium GN=rpl2-A PE=3 SV=1) HSP 1 Score: 93.2041 bits (230), Expect = 1.722e-18 Identity = 51/128 (39.84%), Postives = 72/128 (56.25%), Query Frame = 1 Query: 19 GKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCW----PKVRGVAMNPVEHPHGGG 390 G + + +GN LP+ +P G + N+E +G G LARA+G A +I+ + + +KLPSG ++I C A +GQV G +K L +AG+ CW P VRGV MNPV+HPHGGG Sbjct: 117 GTEVPIKMGNALPLTDMPLGTAIHNIEITLGKGGQLARAAGAVAKLIA--KEGKSATIKLPSGEVRLISKNCSATVGQVGNVGVNQKSLGRAGS---------KCWLGKRPVVRGVVMNPVDHPHGGG 233
BLAST of CF832066 vs. ExPASy Swiss-Prot
Match: RK2B_POPAL (50S ribosomal protein L2-B, chloroplastic OS=Populus alba GN=rpl2-B PE=3 SV=1) HSP 1 Score: 93.2041 bits (230), Expect = 1.722e-18 Identity = 51/128 (39.84%), Postives = 72/128 (56.25%), Query Frame = 1 Query: 19 GKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCW----PKVRGVAMNPVEHPHGGG 390 G + + +GN LP+ +P G + N+E +G G LARA+G A +I+ + + +KLPSG ++I C A +GQV G +K L +AG+ CW P VRGV MNPV+HPHGGG Sbjct: 117 GTEVPIKMGNALPLTDMPLGTAIHNIEITLGRGGQLARAAGAVAKLIA--KEGKSATLKLPSGEVRLISKNCSATVGQVGNAGVNQKSLGRAGS---------KCWLGKRPVVRGVVMNPVDHPHGGG 233
BLAST of CF832066 vs. ExPASy Swiss-Prot
Match: RL2_BORGA (50S ribosomal protein L2 OS=Borrelia garinii GN=rplB PE=3 SV=1) HSP 1 Score: 92.8189 bits (229), Expect = 2.249e-18 Identity = 53/130 (40.77%), Postives = 77/130 (59.23%), Query Frame = 1 Query: 19 GKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIG 408 G A + +GN LP+ +IP G + N+E +VG G L R++G YA+I++ D + VKL SG ++I C A IG++ + KAG + ++ +R PKVRGVAMNPV+HPHGGG + G Sbjct: 121 GPNAPIKIGNALPLENIPIGRTIHNIELNVGKGGQLVRSAGGYAMILA--SDGNYVTVKLSSGEMRLIFKKCIATIGEIGNEDYANVSIGKAGKS--RWLGRR---PKVRGVAMNPVDHPHGGGEGKTSG 243
BLAST of CF832066 vs. ExPASy Swiss-Prot
Match: RL2_BORAP (50S ribosomal protein L2 OS=Borrelia afzelii (strain PKo) GN=rplB PE=3 SV=1) HSP 1 Score: 92.8189 bits (229), Expect = 2.249e-18 Identity = 54/130 (41.54%), Postives = 77/130 (59.23%), Query Frame = 1 Query: 19 GKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIG 408 G A + +GN LP+ +IP G V N+E +VG G L R++G YA+I++ D + VKL SG ++I C A IG++ + KAG + ++ +R PKVRGVAMNPV+HPHGGG + G Sbjct: 121 GPNAPIKIGNALPLENIPIGRTVHNIELNVGKGGQLVRSAGGYAMILA--SDGNYVTVKLSSGEVRLIFKKCIATIGEIGNEDYVNVSIGKAGKS--RWLGRR---PKVRGVAMNPVDHPHGGGEGKTSG 243
BLAST of CF832066 vs. ExPASy Swiss-Prot
Match: RK2_MANES (50S ribosomal protein L2, chloroplastic OS=Manihot esculenta GN=rpl2-A PE=3 SV=1) HSP 1 Score: 92.8189 bits (229), Expect = 2.249e-18 Identity = 51/128 (39.84%), Postives = 72/128 (56.25%), Query Frame = 1 Query: 19 GKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCW----PKVRGVAMNPVEHPHGGG 390 G + + +GN LP+ +P G + N+E +G G LARA+G A +I+ + + +KLPSG ++I C A +GQV G +K L +AG+ CW P VRGV MNPV+HPHGGG Sbjct: 120 GTEVPIKMGNALPLTDMPLGTAIHNIEITLGKGGQLARAAGAVAKLIA--KEGKSATLKLPSGEVRLISKNCSATVGQVGNTGVNQKSLGRAGS---------KCWLGKRPVVRGVVMNPVDHPHGGG 236
BLAST of CF832066 vs. ExPASy Swiss-Prot
Match: RL2_RHOCS (50S ribosomal protein L2 OS=Rhodospirillum centenum (strain ATCC 51521 / SW) GN=rplB PE=3 SV=1) HSP 1 Score: 92.4337 bits (228), Expect = 2.938e-18 Identity = 53/134 (39.55%), Postives = 73/134 (54.48%), Query Frame = 1 Query: 19 GKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCW----PKVRGVAMNPVEHPHGGGNHQHIG 408 G+K + GN +P+R+IP G +V NVE G G LARA+G Y ++ D ++KLPSG +++ C A IG V+ + + KAG RN W P VRGV MNP++HPHGGG + G Sbjct: 120 GEKVDVKPGNAMPLRNIPVGTIVHNVELKPGKGGQLARAAGTYLQLVGR--DQGYAQLKLPSGELRVVRGECFATIGAVSNPDQANVVIGKAG---------RNRWLGRRPSVRGVVMNPIDHPHGGGEGRTSG 242
BLAST of CF832066 vs. ExPASy Swiss-Prot
Match: RL2_MYCAP (50S ribosomal protein L2 OS=Mycoplasma agalactiae (strain PG2) GN=rplB PE=3 SV=1) HSP 1 Score: 92.4337 bits (228), Expect = 2.938e-18 Identity = 57/145 (39.31%), Postives = 79/145 (54.48%), Query Frame = 1 Query: 19 GKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGG-NHQHIGHASTVRRDAPPGQK 450 G ++VGN LP+ +IPEG V NVE G G++AR++G A I+ + D ++L SG + I + CRA IG V G + L KAG + H P VRG MNP++HPHGGG + Q IG + + P G+K Sbjct: 120 GNNVDILVGNSLPLSNIPEGTFVHNVEMQPGGGGIIARSAGTSAQILGKDDDGKYVVLRLKSGEMRRILARCRATIGTVGNGEHSLVLLGKAGRSRH-----LGVRPTVRGSVMNPIDHPHGGGVSKQPIGRKAPL---TPWGKK 256
BLAST of CF832066 vs. ExPASy Swiss-Prot
Match: RL2_GEOSL (50S ribosomal protein L2 OS=Geobacter sulfurreducens GN=rplB PE=3 SV=1) HSP 1 Score: 92.4337 bits (228), Expect = 2.938e-18 Identity = 53/134 (39.55%), Postives = 78/134 (58.21%), Query Frame = 1 Query: 7 SCTVGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIG 408 S A + GN LP+R+IP G ++ N+E +G G LAR++G +A +++ + +VKLPSG +++ C A IGQV + KAG + ++ +R PKVRGVAMNPV+HPHGGG + G Sbjct: 115 SIVASSNADIKPGNALPLRAIPLGTIIHNIELKIGKGGQLARSAGTFAQLMA--KEGKYAQVKLPSGEVRMVLLDCMATIGQVGNIDHENVSIGKAGRS--RWLGRR---PKVRGVAMNPVDHPHGGGEGRTSG 241
BLAST of CF832066 vs. ExPASy Swiss-Prot
Match: RL2_GEOSF (50S ribosomal protein L2 OS=Geobacter sp. (strain FRC-32) GN=rplB PE=3 SV=1) HSP 1 Score: 92.4337 bits (228), Expect = 2.938e-18 Identity = 53/127 (41.73%), Postives = 76/127 (59.84%), Query Frame = 1 Query: 28 ATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIG 408 A + GN LP+RSIP G ++ N+E +G LAR++G +A +++ + +VKLPSG +++ C A IGQV + KAG + ++ KR PKVRGVAMNPV+HPHGGG + G Sbjct: 122 ADIKPGNALPIRSIPLGTIIHNIELKIGKGAQLARSAGTFAQLMAK--EEKYAQVKLPSGEVRMVLMDCMATIGQVGNLDHENVSIGKAGRS--RWLGKR---PKVRGVAMNPVDHPHGGGEGRTSG 241
BLAST of CF832066 vs. ExPASy Swiss-Prot
Match: RL2_BORBZ (50S ribosomal protein L2 OS=Borrelia burgdorferi (strain ZS7) GN=rplB PE=3 SV=1) HSP 1 Score: 92.4337 bits (228), Expect = 2.938e-18 Identity = 54/130 (41.54%), Postives = 77/130 (59.23%), Query Frame = 1 Query: 19 GKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIG 408 G A + +GN LP+ +IP G V N+E +VG G L R++G YA+I++ D + VKL SG ++I C A IG++ + KAG + ++ +R PKVRGVAMNPV+HPHGGG + G Sbjct: 121 GPNAPIKIGNALPLENIPIGRTVHNIELNVGKGGQLIRSAGGYAMILA--SDGNYVTVKLSSGEMRLIFKKCIATIGEIGNEDYANISIGKAGKS--RWLGRR---PKVRGVAMNPVDHPHGGGEGKTSG 243 The following BLAST results are available for this feature:
BLAST of CF832066 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >CF832066 ID=CF832066; Name=CF832066; organism=Citrus sinensis; type=EST; length=781bpback to top |