CF832066

Overview
NameCF832066
Unique NameCF832066
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length781
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF832066 vs. ExPASy Swiss-Prot
Match: RK2_BARVE (50S ribosomal protein L2, chloroplastic OS=Barbarea verna GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.938e-18
Identity = 51/128 (39.84%), Postives = 72/128 (56.25%), Query Frame = 1
Query:   19 GKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCW----PKVRGVAMNPVEHPHGGG 390
            G +  + +GN LP+  +P G  + N+E  +G  G LARA+G  A +I+   +  +  +KLPSG  ++I   C A +GQV   G  +K L +AG+          CW    P VRGV MNPV+HPHGGG
Sbjct:  117 GTEVPIKMGNALPLTDMPLGTAIHNIEITLGKGGQLARAAGAVAKLIA--KEGKSATLKLPSGEVRLISKNCSATVGQVGNVGVNQKSLGRAGS---------KCWLGKRPVVRGVVMNPVDHPHGGG 233          
BLAST of CF832066 vs. ExPASy Swiss-Prot
Match: RK2_ARAHI (50S ribosomal protein L2, chloroplastic OS=Arabis hirsuta GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.938e-18
Identity = 51/128 (39.84%), Postives = 72/128 (56.25%), Query Frame = 1
Query:   19 GKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCW----PKVRGVAMNPVEHPHGGG 390
            G +  + +GN LP+  +P G  + N+E  +G  G LARA+G  A +I+   +  +  +KLPSG  ++I   C A +GQV   G  +K L +AG+          CW    P VRGV MNPV+HPHGGG
Sbjct:  117 GTEVPIKMGNALPLTDMPLGTAIHNIEITLGKGGQLARAAGAVAKLIA--KEGKSATLKLPSGEVRLISKNCSATVGQVGNVGVNQKSLGRAGS---------KCWLGKRPVVRGVVMNPVDHPHGGG 233          
BLAST of CF832066 vs. ExPASy Swiss-Prot
Match: RL2_THEPX (50S ribosomal protein L2 OS=Thermoanaerobacter sp. (strain X514) GN=rplB PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 3.837e-18
Identity = 55/136 (40.44%), Postives = 78/136 (57.35%), Query Frame = 1
Query:   19 GKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCW----PKVRGVAMNPVEHPHGGGNHQ-HIGH 411
            G+   + VGN LP+R+IP G ++ N+E   G  G L RA+G  A +++   + D  +V++PSG  ++I + CRA IGQV+        + KAG         R+ W    P VRG AMNPV+HPHGGG  +  IGH
Sbjct:  119 GENVDIKVGNALPLRNIPVGTIIHNIELIPGKGGQLVRAAGTAAQLMA--KEGDYVQVRMPSGEIRLIKADCRATIGQVSNLDHENVKIGKAG---------RSRWLGIRPTVRGSAMNPVDHPHGGGEGKAPIGH 243          
BLAST of CF832066 vs. ExPASy Swiss-Prot
Match: RL2_THEP3 (50S ribosomal protein L2 OS=Thermoanaerobacter pseudethanolicus (strain ATCC 33223 / 39E) GN=rplB PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 3.837e-18
Identity = 55/136 (40.44%), Postives = 78/136 (57.35%), Query Frame = 1
Query:   19 GKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCW----PKVRGVAMNPVEHPHGGGNHQ-HIGH 411
            G+   + VGN LP+R+IP G ++ N+E   G  G L RA+G  A +++   + D  +V++PSG  ++I + CRA IGQV+        + KAG         R+ W    P VRG AMNPV+HPHGGG  +  IGH
Sbjct:  119 GENVDIKVGNALPLRNIPVGTIIHNIELIPGKGGQLVRAAGTAAQLMA--KEGDYVQVRMPSGEIRLIKADCRATIGQVSNLDHENVKIGKAG---------RSRWLGIRPTVRGSAMNPVDHPHGGGEGKAPIGH 243          
BLAST of CF832066 vs. ExPASy Swiss-Prot
Match: RL2_NATTJ (50S ribosomal protein L2 OS=Natranaerobius thermophilus (strain ATCC BAA-1301 / DSM 18059 / JW/NM-WN-LF) GN=rplB PE=3 SV=2)

HSP 1 Score: 92.0485 bits (227), Expect = 3.837e-18
Identity = 63/146 (43.15%), Postives = 80/146 (54.79%), Query Frame = 1
Query:   19 GKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRD--APPGQK 450
            G KA +  GN LP+R+IP G +V NVE      G LAR++G Y  I++   +     VKLPS   ++I   CRA +GQV         L KAG A  +++ KR   P VRGVAMN V+HPHGGG     G A   R+    P GQK
Sbjct:  119 GSKAEIRPGNALPIRNIPVGTIVHNVELKPEKGGQLARSAGTYCQIVA--KEGKYAHVKLPSEEVRMIHLDCRATVGQVGNVEHENIDLGKAGRA--RWQGKR---PSVRGVAMNAVDHPHGGGE----GKAFVGRKTQYTPWGQK 253          
BLAST of CF832066 vs. ExPASy Swiss-Prot
Match: RK2_IPOPU (50S ribosomal protein L2, chloroplastic OS=Ipomoea purpurea GN=rpl2 PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 3.837e-18
Identity = 52/128 (40.62%), Postives = 75/128 (58.59%), Query Frame = 1
Query:    7 SCTVGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGG 390
            S   G + ++ +GN LP+  +P G  + N+E  +G  G LARA+G  A +I+   +  +  +KLPSG  ++I   C A +GQV   G  +K L +AG    ++  KR   P VRGV MNPV+HPHGGG
Sbjct:  113 SIVSGTEVSIKIGNALPLTEMPLGTAIHNIEITLGKGGQLARAAGAVAKLIA--KEGKSATIKLPSGEVRLISKNCSATVGQVGNVGVNQKSLGRAG--AKRWLGKR---PVVRGVVMNPVDHPHGGG 233          
BLAST of CF832066 vs. ExPASy Swiss-Prot
Match: RK2_HUPLU (50S ribosomal protein L2, chloroplastic OS=Huperzia lucidula GN=rpl2 PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 3.837e-18
Identity = 55/124 (44.35%), Postives = 74/124 (59.68%), Query Frame = 1
Query:   19 GKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGG 390
            G  AT+++GN LP+ ++P G  + NVE   G  G LARA+G  A +I+      T+R  LPSG  ++I   C A +GQV       + L KAG+   ++  KR   PKVRGV MNPV+HPHGGG
Sbjct:  120 GPMATILIGNALPLTNMPLGTTIHNVEITPGRGGQLARAAGTAAKLIAKEGRLATSR--LPSGEVRLISQNCLATVGQVGNVDDNNRTLGKAGS--KRWLGKR---PKVRGVVMNPVDHPHGGG 236          
BLAST of CF832066 vs. ExPASy Swiss-Prot
Match: RK2_GOSHI (50S ribosomal protein L2, chloroplastic OS=Gossypium hirsutum GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 3.837e-18
Identity = 51/128 (39.84%), Postives = 72/128 (56.25%), Query Frame = 1
Query:   19 GKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCW----PKVRGVAMNPVEHPHGGG 390
            G +  + +GN LP+  +P G  + N+E  +G  G LARA+G  A +I+   +  +  +KLPSG  ++I   C A +GQV   G  +K L +AG+          CW    P VRGV MNPV+HPHGGG
Sbjct:  117 GTEVPIKMGNALPLTDMPLGTAIHNIEITLGRGGQLARAAGAVAKLIA--KEGKSATLKLPSGEVRLISKNCSATVGQVGNVGVNQKSLGRAGS---------KCWLGKRPVVRGVVMNPVDHPHGGG 233          
BLAST of CF832066 vs. ExPASy Swiss-Prot
Match: RK2_GOSBA (50S ribosomal protein L2, chloroplastic OS=Gossypium barbadense GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 3.837e-18
Identity = 51/128 (39.84%), Postives = 72/128 (56.25%), Query Frame = 1
Query:   19 GKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCW----PKVRGVAMNPVEHPHGGG 390
            G +  + +GN LP+  +P G  + N+E  +G  G LARA+G  A +I+   +  +  +KLPSG  ++I   C A +GQV   G  +K L +AG+          CW    P VRGV MNPV+HPHGGG
Sbjct:  117 GTEVPIKMGNALPLTDMPLGTAIHNIEITLGRGGQLARAAGAVAKLIA--KEGKSATLKLPSGEVRLISKNCSATVGQVGNVGVNQKSLGRAGS---------KCWLGKRPVVRGVVMNPVDHPHGGG 233          
BLAST of CF832066 vs. ExPASy Swiss-Prot
Match: RK2_ARATH (50S ribosomal protein L2, chloroplastic OS=Arabidopsis thaliana GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 3.837e-18
Identity = 51/128 (39.84%), Postives = 72/128 (56.25%), Query Frame = 1
Query:   19 GKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCW----PKVRGVAMNPVEHPHGGG 390
            G +  + +GN LP+  +P G  + N+E  +G  G LARA+G  A +I+   +  +  +KLPSG  ++I   C A +GQV   G  +K L +AG+          CW    P VRGV MNPV+HPHGGG
Sbjct:  117 GTEVPIKMGNALPLTDMPLGTAIHNIEITLGRGGQLARAAGAVAKLIA--KEGKSATLKLPSGEVRLISKNCSATVGQVGNVGVNQKSLGRAGS---------KCWLGKRPVVRGVVMNPVDHPHGGG 233          
The following BLAST results are available for this feature:
BLAST of CF832066 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RK2_BARVE2.938e-1839.8450S ribosomal protein L2, chloroplastic OS=Barbare... [more]
RK2_ARAHI2.938e-1839.8450S ribosomal protein L2, chloroplastic OS=Arabis ... [more]
RL2_THEPX3.837e-1840.4450S ribosomal protein L2 OS=Thermoanaerobacter sp.... [more]
RL2_THEP33.837e-1840.4450S ribosomal protein L2 OS=Thermoanaerobacter pse... [more]
RL2_NATTJ3.837e-1843.1550S ribosomal protein L2 OS=Natranaerobius thermop... [more]
RK2_IPOPU3.837e-1840.6350S ribosomal protein L2, chloroplastic OS=Ipomoea... [more]
RK2_HUPLU3.837e-1844.3550S ribosomal protein L2, chloroplastic OS=Huperzi... [more]
RK2_GOSHI3.837e-1839.8450S ribosomal protein L2, chloroplastic OS=Gossypi... [more]
RK2_GOSBA3.837e-1839.8450S ribosomal protein L2, chloroplastic OS=Gossypi... [more]
RK2_ARATH3.837e-1839.8450S ribosomal protein L2, chloroplastic OS=Arabido... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_01E04_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01E04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832066 ID=CF832066; Name=CF832066; organism=Citrus sinensis; type=EST; length=781bp
GTCAGTTCGTGCACTGTCGGCAAGAAAGCCACTCTGATGGTTGGTAATGT
GTTGCCCGTTAGATCTATCCCTGAAGGAGCTGTCGTTTGCAACGTTGAGC
ATCATGTTGGTGATCGCGGTGTTCTCGCTAGAGCTTCTGGTGATTATGCC
GTTATCATCAGTCATAACCCCGATAATGACACCACCAGGGTCAAGCTTCC
ATCTGGTGCCAAAAAGATTATTCCAAGTGGCTGCAGAGCTATGATTGGGC
AGGTTGCCGGCGGAGGGAGGACTGAGAAGCCCCTTCTCAAAGCTGGTAAT
GCATACCACAAATTCAGAGTGAAGCGAAACTGCTGGCCTAAGGTGCGTGG
TGTGGCCATGAACCCAGTGGAGCATCCTCATGGAGGAGGTAACCACCAGC
ACATTGGTCATGCTAGCACTGTTAGGCGTGATGCTCCCCCTGGCCAGAAG
GTTGGTCTTATTGCAGCCAGGAGGACTGGTCGGCTCAGAGGACAAGCTGC
TGCCACTGCAGCCAAGGCCGACAAGGCTTAAATCCTTTGTGTTACCACAA
ATCGTCTCTCTATCGCGATCTGTCATTTTACTTTTCCTGCTGCATCATTA
CCTTGGAAAAATTTGTTCAGATTTGGATCTCTGGGATGATCCTGATGTTA
AATTATGTTGGCTTAAAGTTTAGCTTAATTTGCTCTTATCCAAAACTTTA
GTTGATTTTGATATTTTTGGATATATTAATGGATGCCTTCATCAAATTAA
GTAAATGGAAATGTTGTTTTTATCTGAAAAA
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